prot_Ecto-sp13_S_contig18162.5610.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18162.5610.1
Unique Nameprot_Ecto-sp13_S_contig18162.5610.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length90
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18162.5610.1 vs. uniprot
Match: D8LLD6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD6_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 6.940e-47
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = 0 
Query:    1 HNPPDGEGHQRQQNNNAFSMLLVRANVVVPVRRLHLGSGSWREAIGELVGCPTGQELRALNVNGPLVFALASSCPAPFNVKAEKLFGIR 89
            +NPPDGEGHQR ++NNAFSMLLVRANVVVPVRRLHLGSGSWRE IG+LVGCP GQELRALNVNGPLV+AL SSCPAPFNVKAEKLFGIR
Sbjct: 2797 YNPPDGEGHQRHKHNNAFSMLLVRANVVVPVRRLHLGSGSWRETIGKLVGCPAGQELRALNVNGPLVYALDSSCPAPFNVKAEKLFGIR 2885
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BLAST of mRNA_Ecto-sp13_S_contig18162.5610.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.000e-27
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:    1 HNPPDGEGHQRQQNNNAFSMLLVRANVVVPVRRLHLGSGSWREAIGELVGCPTGQELRA 59
            HNPPDGEGHQRQQ+NNAFSMLLVRAN+ VP+RRLHL SGSWREAIGELVGCP GQELRA
Sbjct: 2315 HNPPDGEGHQRQQHNNAFSMLLVRANMAVPLRRLHLRSGSWREAIGELVGCPPGQELRA 2373
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18162.5610.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLD6_ECTSI6.940e-4789.89AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JP29_9PHAE1.000e-2789.83AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18162contigEcto-sp13_S_contig18162:1666..2273 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18162.5610.1mRNA_Ecto-sp13_S_contig18162.5610.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18162 1666..2273 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18162.5610.1 ID=prot_Ecto-sp13_S_contig18162.5610.1|Name=mRNA_Ecto-sp13_S_contig18162.5610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
HNPPDGEGHQRQQNNNAFSMLLVRANVVVPVRRLHLGSGSWREAIGELVG
CPTGQELRALNVNGPLVFALASSCPAPFNVKAEKLFGIR*
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