mRNA_Ecto-sp13_S_contig18162.5610.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18162.5610.1
Unique NamemRNA_Ecto-sp13_S_contig18162.5610.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18162.5610.1 vs. uniprot
Match: D8LLD6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD6_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 6.940e-47
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = 1 
Query:    1 HNPPDGEGHQRQQNNNAFSMLLVRANVVVPVRRLHLGSGSWREAIGELVGCPTGQELRALNVNGPLVFALASSCPAPFNVKAEKLFGIR 267
            +NPPDGEGHQR ++NNAFSMLLVRANVVVPVRRLHLGSGSWRE IG+LVGCP GQELRALNVNGPLV+AL SSCPAPFNVKAEKLFGIR
Sbjct: 2797 YNPPDGEGHQRHKHNNAFSMLLVRANVVVPVRRLHLGSGSWRETIGKLVGCPAGQELRALNVNGPLVYALDSSCPAPFNVKAEKLFGIR 2885
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BLAST of mRNA_Ecto-sp13_S_contig18162.5610.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.000e-27
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 HNPPDGEGHQRQQNNNAFSMLLVRANVVVPVRRLHLGSGSWREAIGELVGCPTGQELRA 177
            HNPPDGEGHQRQQ+NNAFSMLLVRAN+ VP+RRLHL SGSWREAIGELVGCP GQELRA
Sbjct: 2315 HNPPDGEGHQRQQHNNAFSMLLVRANMAVPLRRLHLRSGSWREAIGELVGCPPGQELRA 2373
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18162.5610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLD6_ECTSI6.940e-4789.89AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JP29_9PHAE1.000e-2789.83AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18162contigEcto-sp13_S_contig18162:1666..2273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score172.9
Seed ortholog evalue6.6e-41
Seed eggNOG ortholog2880.D8LLD6
Model size272
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2BWSQ@1,2QVEV@2759
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-27_002240.1
Cds size270
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.500567-CDS-Ecto-sp13_S_contig18162:1665..18421681462937.500567-CDS-Ecto-sp13_S_contig18162:1665..1842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18162 1666..1842 +
1681462937.510188-CDS-Ecto-sp13_S_contig18162:2180..22731681462937.510188-CDS-Ecto-sp13_S_contig18162:2180..2273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18162 2181..2273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18162.5610.1prot_Ecto-sp13_S_contig18162.5610.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18162 1666..2273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18162.5610.1

>prot_Ecto-sp13_S_contig18162.5610.1 ID=prot_Ecto-sp13_S_contig18162.5610.1|Name=mRNA_Ecto-sp13_S_contig18162.5610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
HNPPDGEGHQRQQNNNAFSMLLVRANVVVPVRRLHLGSGSWREAIGELVG
CPTGQELRALNVNGPLVFALASSCPAPFNVKAEKLFGIR*
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mRNA from alignment at Ecto-sp13_S_contig18162:1666..2273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18162.5610.1 ID=mRNA_Ecto-sp13_S_contig18162.5610.1|Name=mRNA_Ecto-sp13_S_contig18162.5610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18162:1666..2273+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAACCCGCCGGACGGCGAGGGACACCAACGACAACAGAACAACAATGC
TTTCAGCATGCTGCTCGTTCGGGCGAACGTGGTCGTGCCGGTGAGACGCC
TCCATCTCGGATCAGGGTCATGGAGGGAGGCTATCGGGGAACTGGTGGGC
TGCCCTACCGGCCAGGAACTGCGTGCGGTAAGTGTGTTGAAGCATCATGG
TTCTGCATACATACACATGCCATGGTATTCGGCAAAGTACGACCTCCAAG
AACTACGACGACCATTGGTCTAGGGACGAGTCGCTTACATAGAACTTTAT
TGATGTTTCCTGTGGAAGGATGAATCGTTTGATCGACAACTCCGTATGTA
CTGGTCTTTGCCTACAAACTGTGAATATAGCCAGGAAACAATACACTTTC
CTAGAGTGTTGACTTGCAGCCGAGAAGTAGGGGAGGGGGCTCGGGCTACA
GGATTTGCCTGACTGTATCTTTCTTCCCTTACCCCTCGTGTCTCGTCGTG
CCGCCGATCCACCAGCTCAACGTCAACGGTCCGCTAGTGTTTGCCCTAGC
CTCGTCGTGTCCGGCGCCTTTCAACGTCAAGGCTGAAAAGCTTTTCGGCA
TCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18162:1666..2273+

>mRNA_Ecto-sp13_S_contig18162.5610.1 ID=mRNA_Ecto-sp13_S_contig18162.5610.1|Name=mRNA_Ecto-sp13_S_contig18162.5610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18162:1666..2273+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAACCCGCCGGACGGCGAGGGACACCAACGACAACAGAACAACAATGC
TTTCAGCATGCTGCTCGTTCGGGCGAACGTGGTCGTGCCGGTGAGACGCC
TCCATCTCGGATCAGGGTCATGGAGGGAGGCTATCGGGGAACTGGTGGGC
TGCCCTACCGGCCAGGAACTGCGTGCGCTCAACGTCAACGGTCCGCTAGT
GTTTGCCCTAGCCTCGTCGTGTCCGGCGCCTTTCAACGTCAAGGCTGAAA
AGCTTTTCGGCATCAGGTGA
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