mRNA_Ecto-sp13_S_contig18161.5609.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18161.5609.1
Unique NamemRNA_Ecto-sp13_S_contig18161.5609.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: A0A6H5K8M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M2_9PHAE)

HSP 1 Score: 603 bits (1556), Expect = 5.720e-209
Identity = 358/420 (85.24%), Postives = 374/420 (89.05%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQASTATVVHRIDAWSPMMPPPRWNSSHGPVQWGLHTDKDIVKAPWEEPPSSPEHKGERSRSDDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDV-GDEGDPASGMLTRQASTDSFSTDYQVGDDVVLPRGCEDGGGAFAAWLYWETS 1257
            S GRWNIRRLKTQADV+KLIGLDPFHSFLNQSTLKIILRIIGLYL+LV LFAIVYTTISHTLGCNL+LTSIREGFLFSLETMTTVGYGTHDYLFGSCW+MLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQ+GELRKHQLLETRVRCYALRHERLTYNPCGNN NN+GSSE+SG GARS SVSSNI         XXXXX     SAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQA   TVVHRIDAWSPMMPPPRWNSSHGPVQWGLHTDKDIVKAPWEEPPSSPEHKGERSRSD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GDEGDPASGML +QAS++S+STDYQ  +   L     + GG   + +YWE +
Sbjct:   90 SVGRWNIRRLKTQADVQKLIGLDPFHSFLNQSTLKIILRIIGLYLSLVFLFAIVYTTISHTLGCNLQLTSIREGFLFSLETMTTVGYGTHDYLFGSCWVMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQIGELRKHQLLETRVRCYALRHERLTYNPCGNN-NNVGSSESSGLGARSASVSSNIXXXXXXXXXXXXXXSTTVTSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQAR-GTVVHRIDAWSPMMPPPRWNSSHGPVQWGLHTDKDIVKAPWEEPPSSPEHKGERSRSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEGDPASGMLRKQASSNSYSTDYQNLEQEELGSRLGNQGGRRQSAVYWEDA 507          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: D8LEB7_ECTSI (IRK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB7_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 2.550e-90
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFM 462
            S GRWNIRRLKTQADV+KLIGLDPFHSFLNQSTLKIIL II LYL+LVLLFAIVYTTIS TLGCNL+LTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFM
Sbjct:  127 SIGRWNIRRLKTQADVQKLIGLDPFHSFLNQSTLKIILLIIALYLSLVLLFAIVYTTISLTLGCNLQLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFM 280          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: A0A836CL18_9STRA (Inward rectifier potassium channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL18_9STRA)

HSP 1 Score: 238 bits (606), Expect = 9.210e-73
Identity = 133/284 (46.83%), Postives = 168/284 (59.15%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQA-STATVVHRIDAWS 849
            S GRWNI R      ++ L   D FH+ L+ +T K++  +   YL +V  FA++Y  ISH  GCN+ +   RE + FSLETMTTVGYGT D  FG CW ++ +++ QAC GLLIDA LIG+LFARL+RPQTRA+TVVF+  AV+RR+RGE YFMFQVGELRKHQLLET+VRCYA+RH R                               + +   G                   A  P+ V +Q+H+MRLQHPDDELGG LLLVLPQ  +   V  +   WS
Sbjct:   14 SYGRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFMFQVGELRKHQLLETKVRCYAVRHHRT------------------------------LPIDAAGCLDD---------------ANPPETVHYQTHNMRLQHPDDELGGALLLVLPQVRARVAVFQKYAIWS 252          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: A0A835YU47_9STRA (Inward rectifier potassium channel-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU47_9STRA)

HSP 1 Score: 223 bits (568), Expect = 4.680e-67
Identity = 124/266 (46.62%), Postives = 161/266 (60.53%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLV 798
            S GRWNI R      ++KL   D FH+ L+ +T K++  +   YL +V +FA +Y  I+   GCNL +   RE + FSLETMTTVG+GT D  FG CW ++ +++ QAC GLLIDA LIG+LFARL RPQTRA+TVVF+  AV+RR+RGE YFMFQV ELRKHQLLET VRCYA+RH                         R+  + +N  L                       ++ P+ V +Q+H+MRLQHPDDELGG++LLV
Sbjct:   39 SFGRWNIGRNTKDEGMRKLFSNDWFHTVLHMTTWKVLGALFLTYLAVVTVFAALYLAIARFDGCNLGIVDYREAYYFSLETMTTVGFGTQDVFFGRCWSVMVIITAQACSGLLIDALLIGLLFARLGRPQTRASTVVFSDKAVLRRIRGEYYFMFQVAELRKHQLLETHVRCYAVRHH------------------------RTLPIDANGALD---------------------ESQPPETVHYQTHNMRLQHPDDELGGSMLLV 259          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: A0A8K1C704_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C704_PYTOL)

HSP 1 Score: 187 bits (475), Expect = 4.620e-51
Identity = 116/303 (38.28%), Postives = 164/303 (54.13%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTH--DYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQASTATVVHRIDAWSPMMPPPRWNSS---HGPV 894
            S GRWNIRR K   +  KL   DPFH+F+N    K++  +IG+YL ++++F  +YTT+   + C   + +  +GF FS+  M T+G+GT+  D  FG C  M  ++++Q+ I +++DA  IG+LF R +R Q RANT+V +  AV+RR+RGE YFMFQ  E+RKHQL+E  VR YA+RH+   Y                 FG                                          +FQS+ MR+QHP+DEL G +LL LP    + VVHR+DAWSP+M P   +S    H PV
Sbjct:   70 SRGRWNIRREKVD-NYWKLYLQDPFHTFINMRLSKVMSGLIGVYLIVLIIFGALYTTVPREM-CKTAIFTYFDGFSFSVSVMFTIGFGTNGGDVFFGDCVWMQVIITVQSLIAIILDALSIGVLFGRFARAQARANTIVLSSTAVVRRIRGELYFMFQACEMRKHQLVEAHVRMYAIRHD---YE----------------FG---------------------------------------QHYYFQSYPMRIQHPNDELNGMMLLALP----SVVVHRLDAWSPLMRPKSASSCGYHHDPV 308          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: A0A5D6YC93_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC93_9STRA)

HSP 1 Score: 186 bits (473), Expect = 7.910e-51
Identity = 111/290 (38.28%), Postives = 154/290 (53.10%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTH--DYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQASTATVVHRIDAWSPMMPP 864
            S GRWNIRR K ++   KL   DPFHS +N    K++  ++ LYL+ +L F  +YTT+     C   + S+ +GF FS+  + T+G+GT+  D  F  C  M  +++ ++ +G+L++A  IGI+F R SR Q RANT+V + NAV+RR+RGE YFMFQ  E+RKHQL+E  VR YA+RH+                                                                 +FQSH MR+QHPDD+LGG LLL LP    + VVHR+DAWSP+  P
Sbjct:   66 SKGRWNIRRHKVES-YWKLYLQDPFHSVVNMRLSKVLGTLVFLYLSTLLFFGFLYTTVPD--HCKTAIFSLYDGFSFSVSVLFTIGFGTNGGDVFFNRCGWMQTVITSESLVGMLLEAISIGIIFQRFSRAQARANTIVLSTNAVVRRIRGELYFMFQACEMRKHQLVEAHVRMYAIRHD----------------------------------------------------------VEFGTHYYFQSHPMRIQHPDDDLGGMLLLALP----SVVVHRMDAWSPLCRP 290          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: F2TZV9_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZV9_SALR5)

HSP 1 Score: 181 bits (458), Expect = 2.200e-48
Identity = 116/297 (39.06%), Postives = 165/297 (55.56%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQASTATVVHRIDAWSPMMPPPRWNSSHGP 891
            S G +N+RR+  +A V  L   D FH+ L  S+LKI L ++ +Y++ VLL+A +Y  IS    C+L+L +  + F+ S+ET+TT+GYG     F  C     ++  Q+  GL IDA  IG++FAR+SR   R+ T+VF+ NA+IR++    YF+FQV +L+K+ L+E  VR YA+RH  ++                   G R+   SS                     S++      P  V+FQSH+MRL HP+DELGG LLL LP      V+HRIDAWSP+MP P   S H P
Sbjct:   96 SRGSFNMRRIIPRAAVASLHMRDWFHTLLTMSSLKIGLVLLVIYVSAVLLWAGLYHLISEP--CDLQLHTFEDAFMLSIETLTTIGYGVPSPYFNGCLAGPFVVLSQSAAGLFIDALCIGLIFARISRGNRRSFTIVFSNNAIIRQIGNNWYFLFQVCDLKKYALVEAHVRMYAIRHRTVS------------------SGGRAVPRSSG---------------PARTISSSSSPPLDPTHVWFQSHAMRLTHPNDELGGMLLLSLPDQ----VLHRIDAWSPLMPTPHDGSEHDP 353          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: K3WWT5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWT5_GLOUD)

HSP 1 Score: 179 bits (454), Expect = 5.630e-48
Identity = 104/290 (35.86%), Postives = 151/290 (52.07%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTH--DYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQASTATVVHRIDAWSPMMPP 864
            S GRWNIRR K      KL   DPFH+ +N    K++  ++ +Y+  ++ F ++Y T+  +  CN  + S  +GF FS+  + T+G+GT+  D  F  C  +  ++++++ + +L+DA  IGI+F R SR Q RANT+V + NA +RR+RGE YFMFQ  E+RKHQL+E  VR YA+RH+                                                                 +FQSH MR+QHPDD+LGG +LL LP    + VVHR+DAWSP+  P
Sbjct:   75 SKGRWNIRRQK-MPQYWKLYLQDPFHTLVNLRLSKVLASLVVMYIAALMFFGLLYRTVPSS--CNTAIHSYFDGFSFSVSVLFTIGFGTNGGDVFFNECVWVQTIITMESLVAVLLDAIAIGIIFQRFSRAQARANTIVLSTNACVRRIRGELYFMFQACEMRKHQLVEAHVRMYAIRHD----------------------------------------------------------VEFGQHYYFQSHPMRIQHPDDDLGGMMLLALP----SVVVHRMDAWSPLCRP 299          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: A0A421GNN7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GNN7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 6.390e-48
Identity = 111/292 (38.01%), Postives = 155/292 (53.08%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLLFAIVYTTIS--HTLGCNLKLTSIREGFLFSLETMTTVGYG--THDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQASTATVVHRIDAWSPMMPP 864
            S G++NI R     D +K+   DPFH+ +N  T +II  +   Y  ++L FA+ Y  +S  H   C++ L+SI E ++FSLET+ T+GYG  T+D  +G C  +  +L+L++  G+++D+  IGI +AR SR   RANT++F+ +AVIR++RG  YFMFQ  E RKHQL+E  VR YA+RHE                                                       E  A  P+   FQ H MR+Q PDD+ G  LL+VLPQ     VVHRID WSP+ PP
Sbjct:   38 SLGQFNIYR--KGGDWRKIYWDDPFHTVINTRTSRIIWGVFIAYFFIILFFALAYLDVSVRHP-TCHVGLSSIIEAYIFSLETIMTIGYGAPTNDIFYGGCTTIATLLTLESFAGIILDSVCIGIFYARFSRANQRANTIMFSNSAVIRKIRGHYYFMFQTCERRKHQLVEAHVRLYAVRHEE------------------------------------------------------EDDAYEPNDFLFQCHQMRVQQPDDDCGAMLLMVLPQV----VVHRIDQWSPLFPP 268          
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Match: A0A484DZB3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZB3_BRELC)

HSP 1 Score: 177 bits (450), Expect = 1.010e-47
Identity = 112/310 (36.13%), Postives = 162/310 (52.26%), Query Frame = 1
Query:    1 SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKI------------------ILRIIGLYLTLVLLFAIVYTTIS--HTLGCNLKLTSIREGFLFSLETMTTVGYG--THDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGFGARSTSVSSNIGLSGLGVSSXXXXXXXXXXSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQASTATVVHRIDAWSPMMPP 864
            S GR+N+ R     + +K+   DPFH+ +N  T +I                  I+ ++ +Y  ++LLFA+ Y  +S  H   C++ L+SI + ++FSLET+ T+GYG  T+D  +G C  M  +L+L++  G+++D+  IGI +AR +R   RANT++F+ +AVIR++RG+ YFMFQ  E RKHQL+E  VR YA+RHE                                                      AE  A  P +V FQ H MR+Q PDD+ G  LL+VLPQ     VVHRID WSP+ PP
Sbjct:   40 SLGRFNVYR--KGGEWRKIYWDDPFHTLINTRTSRIVWGVSIAVSWTLLTMTLSIILLVSIYFFVILLFALAYLNVSMRHP-TCHVGLSSIIDAYIFSLETIMTIGYGAPTNDIFYGGCTSMATLLTLESFAGIILDSVCIGIFYARFARANQRANTIIFSNSAVIRKIRGQYYFMFQTCERRKHQLVEAHVRLYAVRHE------------------------------------------------------AEDDAAGPSEVMFQCHQMRVQQPDDDCGAMLLMVLPQV----VVHRIDQWSPLFPP 288          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18161.5609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8M2_9PHAE5.720e-20985.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEB7_ECTSI2.550e-9095.45IRK domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CL18_9STRA9.210e-7346.83Inward rectifier potassium channel-domain-containi... [more]
A0A835YU47_9STRA4.680e-6746.62Inward rectifier potassium channel-domain-containi... [more]
A0A8K1C704_PYTOL4.620e-5138.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YC93_9STRA7.910e-5138.28Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F2TZV9_SALR52.200e-4839.06Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
K3WWT5_GLOUD5.630e-4835.86Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A421GNN7_9STRA6.390e-4838.01Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A484DZB3_BRELC1.010e-4736.13Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18161contigEcto-sp13_S_contig18161:562..3365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score287.0
Seed ortholog evalue1.5e-74
Seed eggNOG ortholog2880.D8LEB7
Model size1260
KEGG koko:K05005,ko:K05330
KEGG TC1.A.2.1.14,1.A.2.1.15,1.A.2.1.9
KEGG Pathwayko04725,ko04921,map04725,map04921
Hectar predicted targeting categorysignal anchor
Exons5
EggNOG free text desc.inward rectifier potassium channel activity
EggNOG OGsKOG3827@1,KOG3827@2759
Ec32 ortholog descriptionPotassium channel, inwardly rectifying, Kir
Ec32 orthologEc-00_001630.1
Cds size1260
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.4321368-CDS-Ecto-sp13_S_contig18161:561..6901681462937.4321368-CDS-Ecto-sp13_S_contig18161:561..690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18161 562..690 +
1681462937.4452524-CDS-Ecto-sp13_S_contig18161:948..12801681462937.4452524-CDS-Ecto-sp13_S_contig18161:948..1280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18161 949..1280 +
1681462937.455953-CDS-Ecto-sp13_S_contig18161:1618..19761681462937.455953-CDS-Ecto-sp13_S_contig18161:1618..1976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18161 1619..1976 +
1681462937.464634-CDS-Ecto-sp13_S_contig18161:2499..25991681462937.464634-CDS-Ecto-sp13_S_contig18161:2499..2599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18161 2500..2599 +
1681462937.4735959-CDS-Ecto-sp13_S_contig18161:3024..33651681462937.4735959-CDS-Ecto-sp13_S_contig18161:3024..3365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18161 3025..3365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18161.5609.1prot_Ecto-sp13_S_contig18161.5609.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18161 562..3365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18161.5609.1

>prot_Ecto-sp13_S_contig18161.5609.1 ID=prot_Ecto-sp13_S_contig18161.5609.1|Name=mRNA_Ecto-sp13_S_contig18161.5609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=420bp
SAGRWNIRRLKTQADVKKLIGLDPFHSFLNQSTLKIILRIIGLYLTLVLL
FAIVYTTISHTLGCNLKLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIM
LPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGE
AYFMFQVGELRKHQLLETRVRCYALRHERLTYNPCGNNTNNLGSSEASGF
GARSTSVSSNIGLSGLGVSSSASGSTTTTTSAAELAARMPDQVFFQSHSM
RLQHPDDELGGNLLLVLPQASTATVVHRIDAWSPMMPPPRWNSSHGPVQW
GLHTDKDIVKAPWEEPPSSPEHKGERSRSDDAAATAASTAAAAAATAAAA
AAAAAKAAAAAAAADDVGDEGDPASGMLTRQASTDSFSTDYQVGDDVVLP
RGCEDGGGAFAAWLYWETS*
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mRNA from alignment at Ecto-sp13_S_contig18161:562..3365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18161.5609.1 ID=mRNA_Ecto-sp13_S_contig18161.5609.1|Name=mRNA_Ecto-sp13_S_contig18161.5609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18161:562..3365+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCAGGAAGGTGGAATATTCGACGGCTCAAGACCCAGGCGGACGTGAA GAAGCTCATTGGCCTCGATCCCTTCCATAGCTTCCTCAACCAGTCCACCC TTAAGATCATCCTTCGCATCATTGGGCTGGTGAGGATGCAATCATCAACA GGCTTCACGTGAAGGGGGCACCGTGTCACCCTCCAGTGTTACGAGTGCGA ACTATGATTGGACAAAGCAGTCAACAGTATGTTTGGTGGGTAGCATATCG TTGACCTTTGCTTGGAATGCCCTGAGGCGAATAAGGTTCCAGCATGTTTT CGACGTGGACTGTACTCATTCTCCAAACCGCCCTTTCCCTAAGAACAACC CGGCATCCCCCACTCCTCTTTGTCCCCCTTCGTCCAGTACCTGACCCTGG TCCTCCTCTTCGCCATCGTGTACACGACGATATCCCATACCCTGGGGTGC AACCTGAAACTGACGAGCATCCGAGAGGGCTTTCTGTTTTCCTTGGAGAC GATGACCACGGTAGGGTACGGGACCCACGACTACCTCTTCGGCTCCTGCT GGATCATGTTGCCGATGCTGAGCCTGCAGGCGTGCATTGGCCTGCTCATC GACGCCTTCCTGATCGGGATCCTGTTCGCGAGGCTCAGCCGGCCGCAGAC ACGCGCGAACACCGTCGTCTTCACGAAAAACGCGGTCATTAGACGAGTGC GCGGGGAGGCCTACTTCATGTAAGCCGTAACGGCAGCATTAGAAGGGTGC GGGCTGAGGTTGAAAGGGAAGAGACACGGGGGCCTATGTGCGGGTATAGG CAGGCATTTCTTTGACGGTGGGCTTCGGTTTGTCTGCGGCATTTGTCCTA TCTGTTGATGAAACCAAGGCTACGCTTCTCTTGTAAACAACAGAGAGCAA GGTGGAAATTGTTCCACCGTCCATGACCTGGGTTGGTTGCAAAACACTGT CGCGATTCTTACATCTCCCGCATCGTGGCTTATGGGCAAACAAAAGTAAT GCCCTTCCTCCCCCTTCTCCACCGCCTTCCTTCGTAAAACGCCTCGCTTA CATTTAGGTTCCAGGTTGGCGAGCTCCGCAAGCACCAGCTGCTGGAAACC CGTGTGCGCTGCTATGCCCTCCGCCACGAGCGGCTCACGTACAACCCTTG TGGTAACAACACCAACAACCTCGGCAGTAGCGAAGCAAGCGGGTTCGGCG CCAGGAGCACCAGTGTCAGCAGCAACATTGGCCTGAGTGGGCTCGGCGTT AGCAGCAGCGCCAGCGGCAGCACCACCACCACCACCTCCGCCGCCGAGTT GGCCGCGAGGATGCCCGACCAGGTGTTCTTCCAGTCCCACAGCATGCGCC TGCAGCACCCGGATGACGAGCTCGGAGGGAACCTGTTGCTCGTGCTACCG CAGGCGAGTACAGCGGTCGTCCCTGCTTTCAAGGGCACTCCTCACGTTTA AGGACACTCGCCGCTTTTAAGGACACAACCCGACAAGGGCCGCCACAATT TATGGCATTTCCCCACTTTTTAAATTCATGTTTTCGGTAGCATGGTGCAC TGAAGAAAGATAAAAAAAACTGCTGGGAGGTAAATCTTAGGGACACTCCT CGCTTAATGGACACGAAGATTTCAACAGATTGGTGTCCCGAGAAAATCAG GGCAACAGGGGGGGTACTACCCTAGGGACACCTCGTTCTGAGACAAACCA CGAAAGTACCCTTACCGCGGGGACGACTGCCGTAGTTCCAATGGCCGTGA GTGGGGGAGAAGGTTCGCTTTTACGTTTCAACCTAGTGGTTCGGATCGTC TGGTGTCCTTGAGTGCGCGACATGTGCCCTTGTTTCGGGGCACCGGTCTG TTGCTACGAAAACTCCCGACTGTTGACACACTGACCTCTTCCCCCCTACG CGTATTTTGGATTGTCGGGGCGCCTTCCACGGTTTCAGACGGTTGTTCAC CGCATCGATGCCTGGTCGCCGATGATGCCTCCACCCCGCTGGAACTCCTC GCACGGCCCGGTGCAGTGGGGTCTGCACACGGACAAAGGTGATTGGTTGA TCCCGAACAAGTCTTTCGTGCAAGGCTAGTTTTTTTGGTTAGAGGGAGGT TGAGATTGCGCTGTTTTCTGAGCAACGCTGATGACTTGGTCCGTAGACTG ATACGACTGGTACTTGTTCCTTCCTTCCCTTGAGATGTTTGTCCAACGCT CGTTGGCGCTCTCCCTTGCGTTGTTGAAAAGTCAAAATTTTGTACTTGAA ACGCAGCAAAGGCACATGTAATGTTGCATTTCTCGCGTTAAGCGGCCGAA GTAGCGACCTCGAGTGTGATTCTTGACCTCGCCAACCGTGGCGCCTGCCC CCGATTTGGCCATGTCGTTCCACGTAAATCTGTGGTACCACATAGCCTCT GTTGTACCAACAGCAATTAGACACGGCTTTTTACGACAACGCCCACTCTG CGACTTAACGCAGACATCGTCAAGGCCCCATGGGAAGAGCCCCCCTCCTC CCCAGAACACAAGGGCGAACGCTCCCGATCAGATGACGCGGCAGCAACTG CGGCTTCGACTGCAGCGGCTGCTGCGGCCACGGCTGCTGCGGCGGCGGCG GCCGCAGCAAAAGCCGCCGCGGCAGCGGCAGCCGCTGACGATGTTGGGGA CGAGGGTGATCCGGCTTCCGGCATGTTGACAAGGCAAGCTTCTACTGACT CCTTCAGCACGGACTATCAGGTAGGAGACGACGTCGTGCTTCCTCGCGGT TGTGAAGATGGTGGTGGTGCTTTCGCCGCGTGGTTGTATTGGGAGACGAG TTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18161:562..3365+

>mRNA_Ecto-sp13_S_contig18161.5609.1 ID=mRNA_Ecto-sp13_S_contig18161.5609.1|Name=mRNA_Ecto-sp13_S_contig18161.5609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18161:562..3365+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCAGGAAGGTGGAATATTCGACGGCTCAAGACCCAGGCGGACGTGAA
GAAGCTCATTGGCCTCGATCCCTTCCATAGCTTCCTCAACCAGTCCACCC
TTAAGATCATCCTTCGCATCATTGGGCTGTACCTGACCCTGGTCCTCCTC
TTCGCCATCGTGTACACGACGATATCCCATACCCTGGGGTGCAACCTGAA
ACTGACGAGCATCCGAGAGGGCTTTCTGTTTTCCTTGGAGACGATGACCA
CGGTAGGGTACGGGACCCACGACTACCTCTTCGGCTCCTGCTGGATCATG
TTGCCGATGCTGAGCCTGCAGGCGTGCATTGGCCTGCTCATCGACGCCTT
CCTGATCGGGATCCTGTTCGCGAGGCTCAGCCGGCCGCAGACACGCGCGA
ACACCGTCGTCTTCACGAAAAACGCGGTCATTAGACGAGTGCGCGGGGAG
GCCTACTTCATGTTCCAGGTTGGCGAGCTCCGCAAGCACCAGCTGCTGGA
AACCCGTGTGCGCTGCTATGCCCTCCGCCACGAGCGGCTCACGTACAACC
CTTGTGGTAACAACACCAACAACCTCGGCAGTAGCGAAGCAAGCGGGTTC
GGCGCCAGGAGCACCAGTGTCAGCAGCAACATTGGCCTGAGTGGGCTCGG
CGTTAGCAGCAGCGCCAGCGGCAGCACCACCACCACCACCTCCGCCGCCG
AGTTGGCCGCGAGGATGCCCGACCAGGTGTTCTTCCAGTCCCACAGCATG
CGCCTGCAGCACCCGGATGACGAGCTCGGAGGGAACCTGTTGCTCGTGCT
ACCGCAGGCGAGTACAGCGACGGTTGTTCACCGCATCGATGCCTGGTCGC
CGATGATGCCTCCACCCCGCTGGAACTCCTCGCACGGCCCGGTGCAGTGG
GGTCTGCACACGGACAAAGACATCGTCAAGGCCCCATGGGAAGAGCCCCC
CTCCTCCCCAGAACACAAGGGCGAACGCTCCCGATCAGATGACGCGGCAG
CAACTGCGGCTTCGACTGCAGCGGCTGCTGCGGCCACGGCTGCTGCGGCG
GCGGCGGCCGCAGCAAAAGCCGCCGCGGCAGCGGCAGCCGCTGACGATGT
TGGGGACGAGGGTGATCCGGCTTCCGGCATGTTGACAAGGCAAGCTTCTA
CTGACTCCTTCAGCACGGACTATCAGGTAGGAGACGACGTCGTGCTTCCT
CGCGGTTGTGAAGATGGTGGTGGTGCTTTCGCCGCGTGGTTGTATTGGGA
GACGAGTTGA
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