mRNA_Ecto-sp13_S_contig1816.5608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: D8LFP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP5_ECTSI) HSP 1 Score: 168 bits (426), Expect = 3.090e-43 Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 1
Query: 1 QTVLEELILENFEANKPASWTRANQHLQVYRCNLKEFMDVLLKRGRFKDSDHTKDKDGVAEWAPRQFLCPITQGLMMDPVVAQDGH 258
+TVLEEL+LENFEA+KPASWTRANQ LQVYR NLKEFMDVLLKRGRFKDSD TKDKDGV+EWAPRQFLCPITQGLMMDPVVAQDGH
Sbjct: 1328 ETVLEELVLENFEADKPASWTRANQLLQVYRRNLKEFMDVLLKRGRFKDSDDTKDKDGVSEWAPRQFLCPITQGLMMDPVVAQDGH 1413
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: D7FGP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP8_ECTSI) HSP 1 Score: 155 bits (393), Expect = 6.240e-39 Identity = 92/106 (86.79%), Postives = 94/106 (88.68%), Query Frame = 1
Query: 331 MTSAAVHSESVTSNHALKGRIQDWVLEANSAEDQGTGVXXXXXXXXXXXRDGSGTAGLEPLVNKIKIEVRYGSKRYNVTVDRNDVFHGIERLKTFVSRKKALESIT 648
MTSAAV SESVTSNHALKGRIQDWVLEANSAEDQG+ V XXXXXXX SGTAG EP VNKIKIEVRYGSKRY+VTVDRNDVFHGIERLKTFVSRKKAL SIT
Sbjct: 1 MTSAAVGSESVTSNHALKGRIQDWVLEANSAEDQGSDVSVGKXXXXXXXXXXSGTAGWEPPVNKIKIEVRYGSKRYDVTVDRNDVFHGIERLKTFVSRKKALASIT 106
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: A0A835YDY4_9CHLO (U-box domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YDY4_9CHLO) HSP 1 Score: 84.3 bits (207), Expect = 1.980e-14 Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 196 QFLCPITQGLMMDPVVAQDGHSYERHAILEWF----AVCRTNSRPPTSPMTSAAVHSESVTSNHALKGRIQDW 402
+FLCPITQ LM DPVVA DGHSYER AI +W A R+ R PTSP+T A + S ++T N+AL+ I+DW
Sbjct: 734 EFLCPITQDLMSDPVVAADGHSYERAAIAQWLGAGAAAARSGRRGPTSPLTGAPLPSTALTPNYALRSMIRDW 806
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: A0A7S1HBI4_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HBI4_HEMAN) HSP 1 Score: 77.8 bits (190), Expect = 2.220e-14 Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 190 PRQFLCPITQGLMMDPVVAQDGHSYERHAILEWFAVCRTNSRPPTSPMTSAAVHSESVTSNHALKGRIQD 399
P +FLCPI+Q +M+DPV+A DGH+YER I +WF VC+ +P SP++ + SE +T NH L+ I D
Sbjct: 14 PDEFLCPISQCVMLDPVMAADGHTYERSQIQDWFNVCKIEGQPVRSPLSGENMPSEQLTPNHTLRKLITD 83
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: D8TP11_VOLCA (U-box domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TP11_VOLCA) HSP 1 Score: 75.9 bits (185), Expect = 4.910e-14 Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 190 PRQFLCPITQGLMMDPVVAQDGHSYERHAILEWFAVCRTNSRP--PTSPMTSAAVHSESVTSNHALKGRIQDW 402
P + LCPIT LM DPVVA DGHSYER AI WFA RP PTSP+T A + +T N+AL+ I DW
Sbjct: 4 PEELLCPITTDLMEDPVVAADGHSYERDAIARWFA-----GRPGRPTSPLTGAVLPHTGLTPNYALRKIIADW 71
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: A0A7S0VW02_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VW02_9CRYP) HSP 1 Score: 77.8 bits (190), Expect = 6.940e-13 Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 190 PRQFLCPITQGLMMDPVVAQDGHSYERHAILEWFAVCRTNSRPPTSPMTSAAVHSESVTSNHALKGRIQD 399
P +FLCPI+ +M+DPV+A DGH+YER I +WF VC+ +P SP++ + SE +T NHAL+ I D
Sbjct: 100 PDEFLCPISHSVMLDPVMAADGHTYERAQIEDWFNVCKVEGQPVRSPLSGEDMPSELLTRNHALRKLISD 169
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: R1FFI5_EMIHU (U-box domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FFI5_EMIHU) HSP 1 Score: 72.8 bits (177), Expect = 1.180e-12 Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 133 GRFKDSDHTKDKDGVAEWAPRQFLCPITQGLMMDPVVAQDGHSYERHAILEWFAVCRTNSRPPTSPMTSAAVHSESVTSNHALKGRIQDW 402
G+ +++ ++ + E P F+CPITQ LM DPV+A DGH+YERHA+ WFA T SP T AA+ + NHA++ +I +W
Sbjct: 8 GQVREAGEAQEASPLPE-PPEIFVCPITQELMQDPVMATDGHTYERHAVERWFATRLT------SPKTGAALDLALLLPNHAMRHQIIEW 90
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: A0A7R9TLY4_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TLY4_MICPS) HSP 1 Score: 74.3 bits (181), Expect = 2.170e-12 Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 175 VAEWAPRQFLCPITQGLMMDPVVAQDGHSYERHAILEWFAVCRTNSRPPTSPMTSAAVHSESVTSNHALKGRI 393
AE A + F CPITQ +M DPV+A DGH+YER AI EWF+ R+ TSP+T+ V S ++ +NHAL+G I
Sbjct: 98 AAETAAKAFHCPITQSVMRDPVIAVDGHTYERRAIEEWFSRGRS-----TSPVTNLRVSSTTLIANHALRGVI 165
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: R1E9I7_EMIHU (U-box domain-containing protein n=4 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E9I7_EMIHU) HSP 1 Score: 74.7 bits (182), Expect = 2.350e-12 Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 190 PRQFLCPITQGLMMDPVVAQDGHSYERHAILEWFAVCRTNSRPPTSPMTSAAVHSESVTSNHALKGRIQDW 402
P F+CPIT +M DPV+A DGHSYER I W A TSPMT A+ +T NHAL+GRI++W
Sbjct: 127 PADFICPITTEVMSDPVMATDGHSYERKQIERWLAT------KSTSPMTGEALEHSILTPNHALRGRIREW 191
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Match: R1D671_EMIHU (U-box domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D671_EMIHU) HSP 1 Score: 71.2 bits (173), Expect = 2.370e-12 Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 190 PRQFLCPITQGLMMDPVVAQDGHSYERHAILEWFAVCRTNSRPPTSPMTSAAVHSESVTSNHALKGRIQDW 402
P F+CPIT +M DPV+A DGHSYER I W A TSPMT A+ + NHAL+GRI++W
Sbjct: 3 PTDFICPITTEMMSDPVMAADGHSYERKQIERWLAT------KSTSPMTGEALEHIFLFPNHALRGRIREW 67 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1816.5608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1816.5608.1 >prot_Ecto-sp13_S_contig1816.5608.1 ID=prot_Ecto-sp13_S_contig1816.5608.1|Name=mRNA_Ecto-sp13_S_contig1816.5608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp MDVLLKRGRFKDSDHTKDKDGVAEWAPRQFLCPITQGLMMDPVVAQDGHSback to top mRNA from alignment at Ecto-sp13_S_contig1816:9787..15115- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1816.5608.1 ID=mRNA_Ecto-sp13_S_contig1816.5608.1|Name=mRNA_Ecto-sp13_S_contig1816.5608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5329bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1816:9787..15115- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1816:9787..15115- >mRNA_Ecto-sp13_S_contig1816.5608.1 ID=mRNA_Ecto-sp13_S_contig1816.5608.1|Name=mRNA_Ecto-sp13_S_contig1816.5608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1816:9787..15115- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |