mRNA_Ecto-sp13_S_contig1816.5607.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1816.5607.1
Unique NamemRNA_Ecto-sp13_S_contig1816.5607.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: D7FGP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP8_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 2.960e-133
Identity = 210/229 (91.70%), Postives = 212/229 (92.58%), Query Frame = 2 
Query:  605 KRPVLRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGTEKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAACLGAPHDTEETATLKEDPMVRSTCNXXXXXXXXDGAVHPERQTRVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVTGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            KRPVLRVVVLSDGKDTKSTIS HAVCGRLQKVGVIVDSITVGTEKN+QLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAA LGAPHDTEETATLKEDPM RS CN         GAVHPERQ RVQREMMDWMKN +QAFEVFPSDENMHFWKVLV GPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIR CNINSHGRV
Sbjct:  405 KRPVLRVVVLSDGKDTKSTISAHAVCGRLQKVGVIVDSITVGTEKNNQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAARLGAPHDTEETATLKEDPMARSKCNSGGG-----GAVHPERQRRVQREMMDWMKNPHQAFEVFPSDENMHFWKVLVHGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 628
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BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: A0A812XS93_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XS93_SYMPI)

HSP 1 Score: 158 bits (399), Expect = 3.460e-38
Identity = 96/240 (40.00%), Postives = 127/240 (52.92%), Query Frame = 2 
Query:  611 PVLRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGTEKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAACL---GAPHDTEETATLKEDPMVRSTCNXXXXXXXXDGAVHPERQT----------RVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVTGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            P LR+VVLSDG DTKS  S   V   LQK+GVIVD++ +G E    L  +  ATGGY F P +L+ A+RLNELET L +      RP AN     S     T  CL   G  H + +  +  + P  R              A+H  ++T          R+  EM       + AF++FPS +++  WK  V+GP  TPY +G W+L + FP  +P   P+VRFITPI+ CNIN HGRV
Sbjct:  746 PKLRLVVLSDGCDTKSQHSAPKVASSLQKMGVIVDAVMIGNETEPDLHAICKATGGYVFRPASLKDAVRLNELETFLFS----LDRPPANV----SPMAWATKECLEAYGPAHYSVDPCSEDQVPPRRQPTQLGNHVHGLQDALHQTQETNAGAAEARTRRIMAEMRILHTEPHPAFDIFPSCDDISCWKATVSGPEGTPYADGVWLLYIIFPQQFPVEPPEVRFITPIKHCNINQHGRV 977
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BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: A0A812WFX1_9DINO (Anaphase-promoting complex subunit 11 n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WFX1_9DINO)

HSP 1 Score: 155 bits (391), Expect = 3.730e-37
Identity = 95/239 (39.75%), Postives = 130/239 (54.39%), Query Frame = 2 
Query:  605 KRPVLRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGTEKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAACLGAPHD--TEETATLKEDPMVRSTCNXXXXXXXXDGAVHPE--------RQTRVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVTGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            K P LR+VVLSDG DT S      V   LQ  GV+VD++ +G E +  L  +  A+GGY F P +L+ A+RLNELET L +     +RP +N R ++S   L        P D  +E+    ++ P    +C           A  P         R+TR+  EM    +  + AF+VFPS +++ FWKV V+GP  TPY  G W+L + FP  +P   P+VRFITPI+ CNIN HGRV
Sbjct: 1360 KPPKLRLVVLSDGCDTSSVKEAPQVAQFLQSKGVVVDAVMIGNETDPDLHAVCKASGGYVFRPASLQDAVRLNELETFLFS----LERPPSNQRSMNSTDSLEAYGPAFFPLDPCSEDQVPPRKHPAQLESCVHGLQDALHQTAEGPALAGREAWARRTRILAEMRYLHREPHPAFDVFPSCDDIGFWKVTVSGPDGTPYAGGVWLLYVVFPTEFPVEPPEVRFITPIKHCNINQHGRV 1594
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BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: A0A7S0AFI0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AFI0_9DINO)

HSP 1 Score: 152 bits (383), Expect = 3.620e-36
Identity = 91/244 (37.30%), Postives = 131/244 (53.69%), Query Frame = 2 
Query:  617 LRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGTEKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRA---RQRPAANARRVSSKYELVTAAC-------------LGAPHDTEETATLK---EDPMVRSTCNXXXXXXXXDGAVHPERQTRVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVTGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            LR++VLSDGKDT S      V  +LQ+  V +D+I +GTE++  L+ ++ ATGGY F P +L  ALRLNELE +L +G+R    R  P A+A  ++    L    C             L  P      A L    ++   +             G     R+ R   E+  ++ + + + EVFPS E++ FWK+L+ GP  TPY+ G W+L    PP YP+  P+VRF+TPIR CN+N+HGRV
Sbjct:  782 LRMLVLSDGKDTCSGCRAWEVARKLQRESVTLDAIMIGTERDQNLQAIAKATGGYVFQPHSLADALRLNELEVLLSSGERPPHPRLPPVASAASLAQFARLPVDLCDEDNVPQRRDMPLLSLPARALRDAPLALGADEVQAQPAAEAVPAAAGPQGGTSARRRRRAVAELGQFLASPHPSIEVFPS-EDLFFWKLLLEGPEGTPYQGGVWVLYCHLPPEYPACPPQVRFVTPIRHCNVNAHGRV 1024
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BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: A0A812TJ48_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TJ48_9DINO)

HSP 1 Score: 143 bits (361), Expect = 4.900e-35
Identity = 90/251 (35.86%), Postives = 128/251 (51.00%), Query Frame = 2 
Query:  611 PVLRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGTEKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAACLGA---------PHDTEETATLKEDPMVRSTCNXXXXXXXX--DGAVHP-------------ERQTRVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVTGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            P LR+VVLSDG DT S      V   LQK GV+ D++ +G E N  L  +  A+GGY F P +L+ A+RLNELET L +     +RP    R +     L + ACL A         P   ++    +  P + +  +          +GA+               ER  R+  EM    +  + AF++FP+ +++  WKV V+GP  TPY  G W+L + FP  +P   P++RFITPI+ CNIN HGRV
Sbjct:   48 PKLRLVVLSDGCDTSSHKKAPQVAHFLQKKGVLADAVMIGNESNPDLHAICKASGGYVFRPPSLKDAVRLNELETFLFS----LERPCMGPRNMP----LASQACLAAFGPARYPPDPCSEDQVPPRRRPPQLDACVHGLQDALHQTQEGALXXXXXXXXXXXKEGAERSRRILAEMRHLHREPHPAFDIFPNCDDIGCWKVTVSGPEGTPYTGGVWLLYIIFPAEFPVEPPEIRFITPIKHCNINQHGRV 290
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BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: A0A813ANK4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ANK4_9DINO)

HSP 1 Score: 142 bits (357), Expect = 3.100e-33
Identity = 91/267 (34.08%), Postives = 133/267 (49.81%), Query Frame = 2 
Query:  590 AQSPTKRPVLRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGT-EKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAACLGAPHDTEETATL----KEDPMVRSTCNXXXXXXXXDGAVHPE------------------------RQTRVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVT----GPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            A++   +P LR+ VLSDG DTKS+     V  RLQK G+++D++ VG+ E +DQL  L+  TGGY F P +++ ALRL+ELE VL    RA   P      V    +L        P D  +   L    +   + R   +        +G   PE                        RQ R+ REM   M  A+  F+V+P DE++ FW++++         TPY  G W+L + FPP YP   P+VRF+T I+ CN+N++GR+
Sbjct:  215 AEAANSKPALRIYVLSDGADTKSSTPCWRVAKRLQKAGIVLDAVHVGSCEMDDQLHALAKCTGGYVFRPKSIQEALRLHELEVVLHGPDRA---PPTARPMVQGPGDLRKFGPRSYPVDRSDDGALPARRQPQQLTRRAISLETAIRQSEGQNGPEVPNPGPAPNSSGSPEAQLPVRRADRQRRLLREMRALMTQAHPNFDVYPCDEDLGFWRLVLAMDQEADLFTPYATGTWLLYVLFPPDYPERPPEVRFVTSIKHCNVNAYGRI 478
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BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: A0A1Q9D1U5_SYMMI (Putative bifunctional E2/E3 enzyme R795 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D1U5_SYMMI)

HSP 1 Score: 142 bits (357), Expect = 9.500e-33
Identity = 91/267 (34.08%), Postives = 133/267 (49.81%), Query Frame = 2 
Query:  590 AQSPTKRPVLRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGT-EKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAACLGAPHDTEETATL----KEDPMVRSTCNXXXXXXXXDGAVHPE------------------------RQTRVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVT----GPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            A++   +P LR+ VLSDG DTKS+     V  RLQK G+++D++ VG+ E +DQL  L+  TGGY F P +++ ALRL+ELE VL    RA   P      V    +L        P D  +   L    +   + R   +        +G   PE                        RQ R+ REM   M  A+  F+V+P DE++ FW++++         TPY  G W+L + FPP YP   P+VRF+T I+ CN+N++GR+
Sbjct: 1035 AEAANSKPALRIYVLSDGADTKSSTPCWRVAKRLQKAGIVLDAVHVGSCEMDDQLHALAKCTGGYVFRPKSIQEALRLHELEVVLHGPDRA---PPTARPMVQGPGDLRKFGPRSYPVDRSDDGALPARRQPQQLTRRAISLETAIRQSEGQNGPEVPNPGPAPNSSGSPEAQLPVRRADRQRRLLREMRALMTQAHPNFDVYPCDEDLGFWRLVLAMDQEADLFTPYATGTWLLYVLFPPDYPERPPEVRFVTSIKHCNVNAYGRI 1298
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BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: X6MEQ6_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MEQ6_RETFI)

HSP 1 Score: 140 bits (353), Expect = 3.010e-32
Identity = 81/216 (37.50%), Postives = 122/216 (56.48%), Query Frame = 2 
Query:  683 GRLQKVGVIVDSITVGTEKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYEL-------VTAACLGAPHDTEETATLKEDPM----VRSTCNXXXXXXXXDGAVHPE--RQTRVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVTGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            G+LQ+  V+VD+I +G E ++ L  ++ +TGGY FHP TLR AL+LNELET+L   +R  + P    +RV  +++L       V         + +    LKE       V +T          +    PE  R  R+ REM   + N + A +++P +++M FW++++ GP STPY  G W+  M FPP YP  AP++RF+T I+ CNINS+GRV
Sbjct:  892 GKLQENNVVVDAICIGNETDNMLHAIAKSTGGYVFHPRTLRDALKLNELETLLSQTERPVKPPP---KRVRMRHDLYMFESHPVETCSEDRVPERKSVPKLKEPVTTLGAVVATAEKTTDLNNKNTKNSPELNRTRRILREMKSLLNNPHPAVDIYPCEKDMSFWRLVMEGPDSTPYAGGAWLAYMEFPPNYPEQAPEMRFVTSIKHCNINSYGRV 1104
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: A0A1Q9E8K8_SYMMI (Anaphase-promoting complex subunit 11 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E8K8_SYMMI)

HSP 1 Score: 140 bits (353), Expect = 3.880e-32
Identity = 90/248 (36.29%), Postives = 125/248 (50.40%), Query Frame = 2 
Query:  602 TKRPVLRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGTEKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRPAANARRVSSKYELVTAACLGAPHD--TEETATLKEDPMVRSTCNXXXXXXXXDGAVHPERQT----------------RVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVTGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            TK   LR+VVLSDG DT S      V   LQ  GV+VD++ +G E +  L  +S A+GGY F P +L+ A+RLNELET L +     +RP  +   V+S   L        P D  +E+    ++ P    +C              P                    R+  EM    +  + AF++FP  +++ FWKV V+GP  TPY  G W++ + FPP +P   P+VRFITPI+ CNIN HGRV
Sbjct: 3078 TKPLKLRLVVLSDGCDTSSVKEAPQVAHFLQSKGVVVDAVMIGNETDPDLHAISKASGGYVFRPGSLQDAVRLNELETFLFS----LERPPCSRTPVNSMSSLEAYGPAFFPLDPCSEDQVPPRKQPPQLGSCVHGLQDALHQTQGGPXXXXXXXXXXXXXXXXXXLRRILAEMRYLHREPHPAFDIFPGCDDVGFWKVTVSGPDGTPYAGGVWLIYVVFPPEFPVEPPEVRFITPIKHCNINQHGRV 3321
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Match: A0A812JDM1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JDM1_9DINO)

HSP 1 Score: 139 bits (349), Expect = 1.060e-31
Identity = 92/280 (32.86%), Postives = 146/280 (52.14%), Query Frame = 2 
Query:  566 LEVIRPTAAQSPTKRPVLRVVVLSDGKDTKSTISVHAVCGRLQKVGVIVDSITVGT-EKNDQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRA---RQRPAANA----RRVSSKYELVTAACLGA---------------PHDT--------EETATLKEDPMVRSTCNXXXXXXXXDGAVHP---ERQTRVQREMMDWMKNAYQAFEVFPSDENMHFWKVLVT----GPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRQCNINSHGRV 1291
            LE  +   ++ P  +P LRV VLSDG DTKS++    V  RLQK G+++D++ VG+   +DQL  L+ +TGGY F P +++ A+RL+ELE VL    RA   R RP   +    R+   ++  V  +  GA               P +T         ++  + +D  + +  +          A  P   +RQ R+ REM   M+  +  F+V+P DE++ FW++++         TPY  G W+L + FP  YP   P+VRF+T I+ CN+N++GR+
Sbjct: 1041 LEAWQAKQSRGPDAKPALRVYVLSDGSDTKSSLPCWRVARRLQKAGIVLDAVHVGSCGMDDQLHSLAKSTGGYVFQPKSIQEAVRLHELEVVLHGPDRAPETRARPIVESQSDLRKFGPRFYPVDRSDDGALPARRQPQQLTRRAIPLETAIRQTERQHDSGDVSKDSTLEAAPDSNPSNPGNPEASAPRRADRQRRLLREMRALMRQPHPNFDVYPCDEDLSFWRLVLAMDQEADLFTPYASGAWLLYVLFPADYPERPPEVRFVTSIKHCNVNAYGRI 1320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1816.5607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGP8_ECTSI2.960e-13391.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812XS93_SYMPI3.460e-3840.00Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A812WFX1_9DINO3.730e-3739.75Anaphase-promoting complex subunit 11 n=1 Tax=Symb... [more]
A0A7S0AFI0_9DINO3.620e-3637.30Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A812TJ48_9DINO4.900e-3535.86Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A813ANK4_9DINO3.100e-3334.08Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A1Q9D1U5_SYMMI9.500e-3334.08Putative bifunctional E2/E3 enzyme R795 n=2 Tax=Sy... [more]
X6MEQ6_RETFI3.010e-3237.50Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
A0A1Q9E8K8_SYMMI3.880e-3236.29Anaphase-promoting complex subunit 11 n=2 Tax=Symb... [more]
A0A812JDM1_9DINO1.060e-3132.86Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1816contigEcto-sp13_S_contig1816:740..9116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score216.1
Seed ortholog evalue1.4e-53
Seed eggNOG ortholog2880.D7FGP8
Model size1291
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
Cds size555
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1816.5607.1prot_Ecto-sp13_S_contig1816.5607.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1816 3396..7744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.1843169-UTR-Ecto-sp13_S_contig1816:739..9341681462937.1843169-UTR-Ecto-sp13_S_contig1816:739..934Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1816 740..934 -
1681462937.1946251-UTR-Ecto-sp13_S_contig1816:1944..20441681462937.1946251-UTR-Ecto-sp13_S_contig1816:1944..2044Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1816 1945..2044 -
1681462937.2031004-UTR-Ecto-sp13_S_contig1816:2851..29581681462937.2031004-UTR-Ecto-sp13_S_contig1816:2851..2958Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1816 2852..2958 -
1681462937.2113514-UTR-Ecto-sp13_S_contig1816:3337..33951681462937.2113514-UTR-Ecto-sp13_S_contig1816:3337..3395Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1816 3338..3395 -
1681462937.2825491-UTR-Ecto-sp13_S_contig1816:7744..77781681462937.2825491-UTR-Ecto-sp13_S_contig1816:7744..7778Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1816 7745..7778 -
1681462937.2910664-UTR-Ecto-sp13_S_contig1816:8200..83711681462937.2910664-UTR-Ecto-sp13_S_contig1816:8200..8371Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1816 8201..8371 -
1681462937.2996447-UTR-Ecto-sp13_S_contig1816:9045..91161681462937.2996447-UTR-Ecto-sp13_S_contig1816:9045..9116Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1816 9046..9116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.2195916-CDS-Ecto-sp13_S_contig1816:3395..35511681462937.2195916-CDS-Ecto-sp13_S_contig1816:3395..3551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1816 3396..3551 -
1681462937.2278023-CDS-Ecto-sp13_S_contig1816:5221..53251681462937.2278023-CDS-Ecto-sp13_S_contig1816:5221..5325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1816 5222..5325 -
1681462937.23623-CDS-Ecto-sp13_S_contig1816:5885..59811681462937.23623-CDS-Ecto-sp13_S_contig1816:5885..5981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1816 5886..5981 -
1681462937.2445805-CDS-Ecto-sp13_S_contig1816:6354..64061681462937.2445805-CDS-Ecto-sp13_S_contig1816:6354..6406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1816 6355..6406 -
1681462937.2530398-CDS-Ecto-sp13_S_contig1816:6957..70631681462937.2530398-CDS-Ecto-sp13_S_contig1816:6957..7063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1816 6958..7063 -
1681462937.273362-CDS-Ecto-sp13_S_contig1816:7703..77441681462937.273362-CDS-Ecto-sp13_S_contig1816:7703..7744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1816 7704..7744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1816.5607.1

>prot_Ecto-sp13_S_contig1816.5607.1 ID=prot_Ecto-sp13_S_contig1816.5607.1|Name=mRNA_Ecto-sp13_S_contig1816.5607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MDVSKQLFHTFINRQQAYDLPVEVGLVSFGDDVDVPCEPTPLFENFRDEV
DTLTPAGNTKLFDAISEACTLLEKWQTEWVEKADKRKEEANRKRKAAGGD
QANRGPVSDEAACPPCSGAQRREGYQVDHQRSRCLRPAPEGGRDRRLDHG
GDRKERPAQVSVSRHRRLRFPPDDAARCAEAQRA*
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mRNA from alignment at Ecto-sp13_S_contig1816:740..9116-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1816.5607.1 ID=mRNA_Ecto-sp13_S_contig1816.5607.1|Name=mRNA_Ecto-sp13_S_contig1816.5607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8377bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1816:740..9116- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGAGACCAACTTCTCGCTTAAGCTCCGCATCAGGCTCAAGTATCCTTT
CGAGCGCCCCAGCAGAGTCGCGTGAGTGACCGACACGTGTGTATGACAAG
CTGAAGCATTTGTTTACCTTGGGCTTGTGGAACCGCATCTGGCTGAAGCA
TTCTTTCGGCCGCCGCAGCACAGTCGCGTGGGAGTGGCCTGCGCGTACAT
TTACGACAGTATTAGTGTATTGTGCTCTTGGTCTGGCTGAAGCATCAGTT
TGACCTCCCCAGCAAAGTCGAGTGAGTTGCTTTACGCAGGAATGCATGGG
AGTACCAGTCTACTCAGTTTCTAGGGAGGTGGATTGTAGTACATCTGAAC
CGTTCATACAAGTTTCTCTCTCCCGTTGAGCTTTCGACCGTGAGGCAAAA
CCCTGTGCCTATGTCGACCAGCCAAACTGCCCTTCCCACGCCTATTGACT
ACTGCACCTCGTCACATTTTCGGAGCCAACACGAAGGGAAATCTGCGAGG
GTTCTGTAGTAGCCTGAATGGTCGTGTTCCACCATGACAGTACCCGACTA
TTCGCTATTTATTGGGACGGCACGAGGTAACTTGGGTCGCCAGAATATAG
TATGACGAAGACCCGCACACAAGGTTATATTGTCAAGCAGGTTTCACGAC
ACTACCCCCTCATACCAATCTGCTTTCACCTCGTCACTCACCCATCCGCA
CATCTAGCTCTCCCCTGCCGGTACCTAGACTAACGCCTGCAATAGGTTGG
GGCACGACCTGAAGGATGTTGGAGATGGCCAGTACCAAGGGTTCCTCCAA
AAGAATGCCGGTTGCCCACCGGTTCCGGACGCCGCTACCTCTCCGAGGGC
ATCCGCAGCTGATGGTGGAAGCGAGGGGCTTTGTGTCGTGGACTTGGAGC
GATCGGACCCACACAGGTATGTATGGTTTCTCTGAAAAATTGGCCTCAAC
AATGCGTTTGGTGGGGTGCCGTACTTTACTCGAGGAGAGGGGTGGTGATT
CATGCCATTGACGCCCTCTCGTCGAACCTGACGAACCCCCCTCCGGATGC
ACGCACCATGTGGTGTGGCCGTTACGCCCGTGTTCGTGCTGTAAATATCA
AGCGCCTTCTTTTGCCGTGTGGGAGTTGTCCCGCAAAGGTTTGACGTCTT
TCCCAAGTTTGTTGTCTTGGACCATGTGAATAGTAGTTAGCTCTTCCGAA
ATTTCAACCTTGCCCTCCGAATTTTGCATCGTGCTCCTTTAGTGCTTGTG
TGACCTGACTGAATATCGCACGTTTAGTTTTTTTGGTTGACTTCTCTGAT
GTTGATGGCTGAATTTGTTCACCTTGGGGATGTGTCAGGTGTCGGAAGCA
GTCGAGGCTCTCCCTTACGAGGATGGATGTCTCAAAACAGCTCTTCCACA
CCTTCATCAACAGGTGGGTGCAGCGGTTGCGTTCCTAACTTTGTCGCCGT
AAGCTGTTGGCTCCTGTTTCACACCACTACCCACCACTGCCTCCTCCTTG
TTCTTGGATTCGCAGAAAATCATTCCCGACAAAGTCATTCCCGATGCCTC
AAGCAAACTAAGTCAAAGGACACAAGTTAACACCGACGGGATTATCCTTG
TGCGGACTACTTACAGAATCCAAACAAAGTAAGTCGATGGATAACAAGCT
CGAGAGGCGCATACATGTAGCGGGATGGGGCACACGACGCTCAACAAGAG
AACAGATTTACTCGGACATCCGAATTATTACCCTGACATTGCGTCGCAAA
CTAGTTTTATTCTCTTCTGACGGCTGGTGGGGAGAGACGTACCTGAGTCC
TCGGACACGTCGAACATATACGTGGAGGTAGATGTTTTCCTTTCGCGTGT
ACACTCAAGATTGCAGACATGTACAGAAATCCGCTTGAAATGACCCGTCG
CTGGACCTTGCTCCTACGTGTTCCTCTTGTTACTAGCGTTGTTTCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGCCACCACTACCGCC
GCCGCCGCCGCTTGTGCCGTCATATTCGCGGGTCGATTTCGCCCCGAGTA
CAGGCAGCAAGCGTACGACCTGCCCGTGGAGGTCGGCCTCGTTTCCTTCG
GAGATGACGTTGACGTCCCCTGCGAACCCACCCCTCTCTTCGAGAACTTC
CGGGACGAGGTTTGCAAACCACGAGTTTTTCGCTTTCCCGCACAGTTCTG
CCGGCGGATGTGTTGCGGCAAGGCGTAGCACACAACGTTATGCACGTGTA
CGCTCGAATATTTTACGTCTGTCGCATAACGTGATGCAAGTTTACTCGTA
AACCGCAGTATACGGGTATCACACGACGTGATGCACGTGCACTCGGATAT
GCGTCCCCTGCTCGAACCGGTTGGTGAATGATCCTGGACCAAAATGATGG
TGTTTGCAGAATAAAGTGTGTTTACCCCCCCCCTCCCTCCCGCGTATTCT
TCGGACACACATCACGGACTAGCCCACGGCTAGCGCTGCGTGCAGCATGA
AGTGACCAGGAGCTGTGTACTGTTACTTCGGTGTTTTCGTGCGATTTTCT
CGCCGTCATAGCCGCGGCCTCCGCACCCTCTTCACATTGTCTTCTTGGAT
ACAAGAGGTTCCATAACTACATGCAATGGCCCATGTACTTGTAAGTCACA
TTTGACTATCGTTTTCCACTTCACACAATGCTGCCGCCTATCTCACATCC
GCCACTCCAGGTGGACACCCTGACACCGGCGGGAAACACCAAGCTTTTCG
ACGCCATCTCAGGTACACGCAGCCAACCAACCGGCCGGTTTGGTGGTTTT
GTTATTGTGGTCGTGTTATAAAACTGTTCCGGTGTCTGTCCAGTACGTTT
TAGCATCTGTACGGGTCCAGCCGATCCGGATGCCTTCCGTGGTCGCACGC
CAACTAACCCCCCCCCCCCAGTCAAGGAGGGTACGAACTTGTAGAGAAGC
GAATATGGAGAATCGTTTCTCTGGTCTTCACGGCTGAGGCGACGCCTCTC
CCAGGCTCTCAGAAGCATTCGCTCCGTGCTTCCCGCTTCGGCTGTAATTC
CATCTACAATTGTCTTGTTGGGGGGAACAGGCCGTCAACCACATCGTCGT
TTCTCGCTCTTATTGTTGTTGTCGGTGTGGGTCAGAGGCGTGCACTTTGC
TGGAGAAGTGGCAGACAGAGTGGGTGGAGAAGGCTGACAAGAGGAAGGAG
GAGGCAAACCGCAAGAGAAAAGCAGCTGGAGGTGTGTGACTACTGCTGGC
ATTGTTGTTCGCTATTGTTGTTGTTGCGGTTGTTGTTGCTGTTGTTGTTG
ATGTTGTTGCTCTTGTTGTTTTTGTCGTTTGCTGTTGTTATTATGGTTGT
TTGTTATTTTCCCTGTTTGTTTTTTTGTGTTTTTGCTGCTGTTGATTGTG
CTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGCTGGTTGGTGTTGT
TGTGGTTGGTGGTGGTGTTTGCTCTTGTTGTCGTTGCGGCGGCGGCGGCG
GCGGCGGCGCTTCCCGTGTCGTGTGCCTTAAGGCGTGAACTAACCCCCCT
CTTTTAGCAGAACAGGGGTTAGGAAGCAGAATATCAGAATCCCCTGTTCC
CCGAGGAGAAAGGTGATTTTAAGATTCAGGAACAAACGCTGGACTTCGGA
GTTCCCTGTTCCATGTTGCTTCCTCCTCACCAAACCACCAGCAACACCAG
CCCGTAGACGTGTAGCGCAGACCTCTCAGCGCGTGGAGTATGCCCCCCCC
CCCCCCCCCGCACTCTCTCGGCGTGTTCACTGCATCCAAAGGTGATCAGG
CCAACCGCGGCCCAGTCTCCGACGAAGCGGCCTGTCCTCCGTGTAGTGGT
GCTCAGCGACGGGAAGGATACCAAGTCGACCATCAGCGTTCACGCGTAAG
GGTGGCATTGTCTGTGATCGTCTGTCTGTGTGTCTCTCTGTCTGTCTCTC
TCTTTCTCGCCTTCTGTCGTCTCTCGCTCTCCCTCCGTTTTTGGTGGATA
AATTGTTCGGAACCCTCTGTTTTGATTGGAACCGGCAGGTTTGACACTGC
CGTGTGAGGATAGAATTCTCTCCCGCTCTCTCTCTCTCTGTGTTTTTGGT
CAAGAGCATTGGTTCGGAACCCTCTGTGTTCCTTGGAGCTGGCAGCTTAA
GCATTTCCGGACGAAGCGGCGAAGGCCCTCGTCTTTCTACAGTACTCGAC
CAAGTCTCAAGCAGAACCCGGCTGGAGCAAACAGTCTATTAATAGCACCA
CCACCTGGAAAACGCCAGTATTGTCAATTACTTCTATTAAGTACATCACA
CTTCGAAGGAGTGTCGTTGTGCCGCCATAAGGCTTACCCCCCTTCTCGCA
CTCCGCCAACCTTGTCAAAACGCTTTCGATCAAGCTGGCGCTGTTGCCGG
CAAATGAAATGAAGCCCAAGACTCAATCATAGGCACAAAAAAAATGGATT
GAAAGCTCCGAGCGCCGGTTGCGACACGTACCCCCTTCCCTTTACCATCG
GCCCCCCCTGCCGCACCTTCTCCCTGAAATGCCGTGTGTGTGGGATATGC
AGTAATTACATTCCTCTCCCCTCGGTGCTTGCCATCGGGATTGGGTTTTC
GTCGCTTAGCAGCGATGTTGTAAAACAAGCGGATCACTTCATGAGCTCGG
CAACCAGGTCACCGCTTTTTTTTTTGCCTTTGTTTTTGTTTTTTTTACGG
CAACCATGACTGCTGATCGAGCAGATGATGTTGTGCGGGGTCGAGAACGC
TCACTCCCCCCAAAGGGGTTAATCGCACCACGTTGTGTTAAATTGGTCAA
GCACCCTCGAGGCAGGTACACAGTGCTTACAGCTGCTGTCTCTGGATGTG
AAAGCACCAGACAATAAATGAAGTCATACGCAGCTGTCATTCGTACGCAA
GGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCGCACCCA
TCATGCGACTCGCNNNNNNNNNNGAGCCTGGTCCGGTGAGGACCCGGCGT
GCTCCGTGCCGGCTTTGTAGGGACGCGAGGTCAATGGTCTAACGACTACG
GCATGCACGACTAGGAGTACACCCACCCCGCTCGAGTGCCGTTTAGTGCC
CAGAAGTTTGACCGGCACTATTCCGGCCAGCTGCACTATTCAAAATGCAG
ATTGACTTCCTTGTTCCGTTCTGTGCCCGCCGGAAGCACCGACACTCTAC
CGGGCACCCGCACTATATAGTCGGCACTAACCTCCCCCCCCCGCGCGCTG
TGCCCCCTTCCTTTACCCGTCACGCCCGCCTGAGCACCTTCTCCCTCAAA
TGATGTTTATGCGCGCACCAGTCGACAACAAAGTGGCACAGACCCCAATC
CCTCCCATCAACCCCCCTGCGCGTCTTCTCCCTATAATGCTGACTGTGCG
CGCGCTCGTGGACGTTGAAAAAAACTTAATCCTGCGCGTCTTCTCCCTAT
TATGCTGAATGTATGCGCGCTCGTGGACGATAAAATAAAAATTAATCCTG
CGCGTCTTCTCCCTACAATGCTGAATGTGTGCGCGCTCGTGGACGATAAA
CAAAAAAAAAAACAGTGTCTGCGGCCGGCTCCAGAAGGTGGGCGTGATCG
TCGACTCGATCACGGTGGGGACCGAAAAGAACGACCAGCTCAAGTGTCTG
TCTCTCGCCACCGGCGGCTACGCTTTCCACCCGATGACGCTGCGCGCTGC
GCTGAGGCTCAACGAGCTTGAGACGGTGCTGCTCGCGGGGCAGAGAGCCC
GCCAGCGGCCGGCCGCCAACGCTAGGAGGGTGAGGGGACACTGTGTTTTT
GGACGGGAGGGCGTTCTCATGTTTATTGCATGCTTTTGTCATTAGACCAT
TGCCCGCGCGTCCTCTAGAGGAACGGTCCTAAGAAATGTGGCTTTCAGTG
CTGTGTAGCGTAGAGGCAACTTTTGTGACACTAGGTTAGAGTGGTAAGGA
TTGTTGAGAGCTGCGAATGTTACCAATCCAGGGCACCTACAGTAGATGGT
TCTGAGAGCATGGGGGGCGCAAGGCCCGCCGACGACTCAACAGAAACCGT
TCGTACAATAGTCGAAACTTCTTCAAACGCTGTACTTTCCAACAATCTTC
CTCGAACTCTGTTTGCCCTTTGTGTTTTTGTTTGCTGCTATCGTTTGGTT
GTCCGCAGGTGTCGAGCAAGTACGAGCTAGTGACTGCTGCGTGCCTGGGA
GCACCCCACGACACGGAGGAGACGGCGACTCTCAAGGAGGACCCCATGGT
CAGGAGCACGTGCAAGTGAGGATTGTCATCGACTGTTGGCATCGTCGGCA
CAAGCAGAATCGCTGCCTTGATGAATTCGTGGTTGTACGATAGCACTCGC
AATTCAGTATCGGTCACAACGTGAACTTGCCTGCTCCACGGTGTTGAGAC
ATCAGCACAACCACAGCATAAGGACTAGAGAGTATTTAACATCGCAAGGC
AAGATTGAGCGGTCGACGGTACCACCAGCGCTTGCTTCGGTCCCCACCGG
ACGCCATCAACCAGAGCACGCCCCTCTGGCAAGCCCACGGTAGACGCTTC
GTGTTTCATCCCCTGAAAGCATGGTTTTGTTGGTTCCCAAATATTCGCGG
TAGACGGGCCCAAACTTAAATTACGTGTCCACCTTTCACCGTGGGTTGCG
CAAGATACCCCATCTCCTGGACCGATGTTTTAAGCTCGATTTCTCCGCCG
CACAACCAGCGGCAGTGACTACAGTGGCGGCGTTGTAGCCGTCTCATCGA
GAGCTTTCTCAGAACATTTTGTTTGATTTTGATGTCCTCTTTGGCGTGGA
GTCGTCGAGCTTTGACCCTCGGCTCAGCGGGTGTGGTATCTTACATATGC
ATCCAACCGTGTAATACCAGGACAATGATTTTTCCTCAATACCTAGACAA
CACTTTAGATGTGACTTACTCCTCGTCGTCGCACACGGGTCTCCCAAAGT
AGTTTGAACACCTCTTTATTGTGTACTTCCAAGTATCAACTCTTTCGACG
CCCGCCTCGTTCGTGCTGCGTCGTTTCCAGGCCCCTCGCCGACGCGCTTG
CTACCCTCGAGCCGGCCGATAGCAACAACGGCGGTGGTGGTGGTGATGAC
GGGGCCGTCCACCCTGAGCGCCAGACGCGGGTGCAGCGCGAGATGATGGA
CTGGATGAAGAACGCGTACCAGGTGCTTTGTGCCGCAGGCGGTTTATTAA
CTAAGTGGGAAACATTGCACGTCCAACGTACCGTTGATATCGTGATACGG
AACCGAGCGTTCCCATGTACTCCAGCTGTCCTATCCGAGTTTGGTTTGCT
GTTCTTCCCACCCGTACCGCAGGAACTTTTGCGGTCGTGCTGTACCGTCA
TTCTGCTACGGTACGATATTCAGATACCATGCTGTCGTGGGCCCGCAGCA
CTCAACGTTTTGCCCTTGCAACTGCCCGGGATTTCCCGGTGAAACCCTCT
CGCCATCGATGGAACAATCAAGTCGTTGTCTGCTCTTCGAGAGTCTTGGC
CGTGGCCCTGAAATTTGCTGGTTTCCGACTCGGTCATACACGGTACATCT
CCGGGAGCACGACTGTGTTGTTTTATCACGCAGGTTAACCGTACAACATG
ACGGGCGTTTCTCAGCCCCCCCACCCCCCGAAACCCCCCCCCGTGGTGAG
GCTGGTCTGTCGAGAACCCGGAGTGCTCCGTCCCGGCTTTGTAGGGATGC
GAGGTCAATGGTCAATCGACTATGGCGTGAACGACTATGAGTACAGCCCC
CTCCTAGATGTTGCTGACGATGAAGTTCGGCTGACCGCCACGATTGAGAT
GACGCGCCATTTTTTGGGTAACGTTGTCGAAGAACATGCTGGTGCGAGAA
CATGCACACTGGGAGGTGCTCCGCACTGTACCGGTGCACGCGATCGCAAC
AGCACGTTTCTTGTTCCACACGGAAACCACGCATTTCTCCCTTGCCTTTG
TTAACTACCCGGTATTGTAGACACAGGTGCTAAAAAACAATACCGAGCAG
AAACCGGAACATTTTTTTTTTGTGCGAAGACAACGTGAGAAACATCGTCA
GCAACAACAGACCCAACAACAGACCCAACAACACCACAACAACGCCACAA
CAGCCCCAACCCCAACCCCAACAGAATAGCATCATCCTCATCACCCCGCT
CGTCCTTGCCATCGGCTCATATCGCCCGCCAGGCGTTCGAGGTGTTCCCG
AGCGACGAAAACATGCACTTCTGGAAGGTTCTCGTCACCGGCCCGGCGAG
CACCCCCTACAGGGAAGGGTGTTGGATGCTCAGCATGTTCTTCCCTCCGG
GCTACCCCTCCGTGGCCCCCAAGGTCCGCTTCATCACGCCCATCCGCCAG
TGCAACATCAACTCCCACGGAAGGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1816:740..9116-

>mRNA_Ecto-sp13_S_contig1816.5607.1 ID=mRNA_Ecto-sp13_S_contig1816.5607.1|Name=mRNA_Ecto-sp13_S_contig1816.5607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1816:740..9116- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGTCTCAAAACAGCTCTTCCACACCTTCATCAACAGGCAGCAAGC
GTACGACCTGCCCGTGGAGGTCGGCCTCGTTTCCTTCGGAGATGACGTTG
ACGTCCCCTGCGAACCCACCCCTCTCTTCGAGAACTTCCGGGACGAGGTG
GACACCCTGACACCGGCGGGAAACACCAAGCTTTTCGACGCCATCTCAGA
GGCGTGCACTTTGCTGGAGAAGTGGCAGACAGAGTGGGTGGAGAAGGCTG
ACAAGAGGAAGGAGGAGGCAAACCGCAAGAGAAAAGCAGCTGGAGGTGAT
CAGGCCAACCGCGGCCCAGTCTCCGACGAAGCGGCCTGTCCTCCGTGTAG
TGGTGCTCAGCGACGGGAAGGATACCAAGTCGACCATCAGCGTTCACGCT
GTCTGCGGCCGGCTCCAGAAGGTGGGCGTGATCGTCGACTCGATCACGGT
GGGGACCGAAAAGAACGACCAGCTCAAGTGTCTGTCTCTCGCCACCGGCG
GCTACGCTTTCCACCCGATGACGCTGCGCGCTGCGCTGAGGCTCAACGAG
CTTGA
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