mRNA_Ecto-sp13_S_contig1815.5603.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1815.5603.1
Unique NamemRNA_Ecto-sp13_S_contig1815.5603.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1815.5603.1 vs. uniprot
Match: A0A6H5L912_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L912_9PHAE)

HSP 1 Score: 456 bits (1172), Expect = 3.880e-160
Identity = 246/282 (87.23%), Postives = 250/282 (88.65%), Query Frame = 1 
Query:    1 MKPTALHPPGFAPTVFPGLTNTDGGGGGASPLAMSLGFQLRNHPHLRRFHGDGSGGGEATNSFLDIVRKAIVAKARKVRDAIGTKKYDELALFNRKGRPTVHVPAGRGVTESEWAELDARRTVRFSPRIGAVLVPTRKETFPKPADVAASFVTAEERAGAENDISPTGSGRSEWQALLLETRDEAREKQMAQPQLXXXXXXXXXXXXXXXXXXXDAQKERPPNVFEALVLQWRNTVNSNNEADGARHGGFGLRRPLGDGGKIVHHASDPSLVSSDAEGRTAG 846
            MKPTALHPP FAPT FPGLTNTDG GGGA+PLAMSLGFQLRNHPHLR+FHGDGSGGGEATNSFL+ VRKAIV KARKVRDAIGTKKYDEL L  RKGRPTVHVP GRGVTE EWAELD RRTVRFSPRIGAVLVPTRKETFPKPADVAASFVTAEERAGAE DISPTG GRSEWQALLLETRDEAREKQ A    XXXXXXXXXXXXXX     DAQK RP NVFEALVLQWRNTVNSNNE DGARHGGFG+RR LGDGGK VHH SDP  V SDAEGRTAG
Sbjct:    1 MKPTALHPPSFAPTAFPGLTNTDGSGGGATPLAMSLGFQLRNHPHLRQFHGDGSGGGEATNSFLNNVRKAIVDKARKVRDAIGTKKYDELTLCKRKGRPTVHVPTGRGVTEREWAELDTRRTVRFSPRIGAVLVPTRKETFPKPADVAASFVTAEERAGAEKDISPTGPGRSEWQALLLETRDEAREKQEAXXXXXXXXXXXXXXXXXXQQPRKDAQKARPLNVFEALVLQWRNTVNSNNEVDGARHGGFGVRRRLGDGGKKVHHVSDPCHVDSDAEGRTAG 282
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BLAST of mRNA_Ecto-sp13_S_contig1815.5603.1 vs. uniprot
Match: D7G2Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z5_ECTSI)

HSP 1 Score: 433 bits (1113), Expect = 2.700e-151
Identity = 233/284 (82.04%), Postives = 243/284 (85.56%), Query Frame = 1 
Query:    1 MKPTALHPPGFAPTVFPGLTNTDGG--GGGASPLAMSLGFQLRNHPHLRRFHGDGSGGGEATNSFLDIVRKAIVAKARKVRDAIGTKKYDELALFNRKGRPTVHVPAGRGVTESEWAELDARRTVRFSPRIGAVLVPTRKETFPKPADVAASFVTAEERAGAENDISPTGSGRSEWQALLLETRDEAREKQMAQPQLXXXXXXXXXXXXXXXXXXXDAQKERPPNVFEALVLQWRNTVNSNNEADGARHGGFGLRRPLGDGGKIVHHASDPSLVSSDAEGRTAG 846
            MKPT LHPPG  PTVFPGLT TDGG  GGGASPLAMSLGF+LRNHPHLRRFHGDGSGGGEATNSFLD VR+AIV KAR+VRDAIGTKKYDEL LF RKG+PTVHVP GR V E  WAELDARRTVRFSPRIGAVLVPTRKETFPKPADVAASFVTAEERAGAE +ISPTGSGRSEWQALLLETR EARE+Q  Q QLXXXXXXXXX           AQKERP NVFEAL LQ RNT NSN+E DG RHGGFG+RRPLG+G K VHH SDPSLV S+AEGRTAG
Sbjct:    1 MKPTTLHPPGSTPTVFPGLTTTDGGRGGGGASPLAMSLGFRLRNHPHLRRFHGDGSGGGEATNSFLDNVREAIVDKAREVRDAIGTKKYDELTLFKRKGQPTVHVPTGRVVAERAWAELDARRTVRFSPRIGAVLVPTRKETFPKPADVAASFVTAEERAGAEKEISPTGSGRSEWQALLLETRHEARERQETQAQLXXXXXXXXXQRHECQQPRKLAQKERPRNVFEALFLQRRNTANSNDEVDGPRHGGFGVRRPLGEGRKKVHHVSDPSLVGSNAEGRTAG 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1815.5603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L912_9PHAE3.880e-16087.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2Z5_ECTSI2.700e-15182.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1815contigEcto-sp13_S_contig1815:1433..2936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size849
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_004290.1
Cds size849
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.8114655-CDS-Ecto-sp13_S_contig1815:1432..18221681462936.8114655-CDS-Ecto-sp13_S_contig1815:1432..1822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1815 1433..1822 +
1681462936.8217335-CDS-Ecto-sp13_S_contig1815:2477..29361681462936.8217335-CDS-Ecto-sp13_S_contig1815:2477..2936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1815 2478..2936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1815.5603.1prot_Ecto-sp13_S_contig1815.5603.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1815 1433..2936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1815.5603.1

>prot_Ecto-sp13_S_contig1815.5603.1 ID=prot_Ecto-sp13_S_contig1815.5603.1|Name=mRNA_Ecto-sp13_S_contig1815.5603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=283bp
MKPTALHPPGFAPTVFPGLTNTDGGGGGASPLAMSLGFQLRNHPHLRRFH
GDGSGGGEATNSFLDIVRKAIVAKARKVRDAIGTKKYDELALFNRKGRPT
VHVPAGRGVTESEWAELDARRTVRFSPRIGAVLVPTRKETFPKPADVAAS
FVTAEERAGAENDISPTGSGRSEWQALLLETRDEAREKQMAQPQLQQERD
QEEEQRRERQQPRKDAQKERPPNVFEALVLQWRNTVNSNNEADGARHGGF
GLRRPLGDGGKIVHHASDPSLVSSDAEGRTAG*
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mRNA from alignment at Ecto-sp13_S_contig1815:1433..2936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1815.5603.1 ID=mRNA_Ecto-sp13_S_contig1815.5603.1|Name=mRNA_Ecto-sp13_S_contig1815.5603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1815:1433..2936+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACCGACTGCACTCCACCCTCCCGGCTTCGCACCGACGGTATTTCC
CGGCCTCACCAACACCGACGGCGGCGGCGGCGGCGCTTCCCCCTTGGCGA
TGTCGCTCGGCTTTCAGCTGCGAAATCACCCTCACCTCCGCCGATTCCAC
GGCGACGGGTCCGGTGGCGGCGAGGCCACCAACTCCTTCCTCGACATCGT
CAGGAAGGCTATCGTGGCCAAGGCGCGGAAAGTCCGCGACGCCATCGGCA
CGAAGAAGTACGACGAGCTCGCGCTTTTCAACAGGAAGGGGCGGCCCACG
GTTCACGTGCCCGCCGGCCGCGGTGTTACCGAGAGTGAGTGGGCCGAGCT
CGACGCCCGCCGGACCGTAAGGTTCAGCCCGAGAATAGGGGTAAGCCGGC
TTGAATTTGTTGCGGCCGCCTTTTCGATACCGAAAAGCGTTCCGATCTTC
GCTCAGCGTGTTTTGAAACCGGCGCCGCCGCTCCTACTGACGAGGACGCC
TTCCGTGGTCACAGGTCAACTACAAGCCAAACGTGACGCAGCATCAGATG
AAGCACCCTTCGTACAACCTACAAAGGGCCCAGAAAAGAATCACACAAAA
TAGTAGTTCGAGTTAGTAGATTCTTGTTCATGCTCATTGCCTTTCAGCAA
GTGCATATGTTTGGGGTTTCCCCCGATGGACCTTTAGACACATTTCGCTC
ATGGCGTCCCGTCTCGGAGATAATTTGAAAATCGCAGCGGCATCGCTCGT
GGTTGAGGTATCTGGCCCTCCCAAACAGAAAAGTAATATCCCCAGGTCAT
AGATACATCATGTAGGTCAAGTGGCGAAATAGCGTTTCAAAATACTTGTC
GGAAGGCGTACGTGGAAGCCAGCTTGTAAGCACCTGGCAAAAACACACAC
ACAGCGTCTGCCGGACAGCAAACGAACTACACACCAGTGTCTTCAGGCGA
AGGGCTGATGTTCGTCTAAACAAGGAATCAATCCTCACCTGCCCAAGCCC
CACCCTCTCTTGCCACCTATCCTGCTCTCTTCCGCCGCCCATCAGGCGGT
CCTGGTGCCAACCCGGAAGGAAACCTTCCCCAAGCCCGCTGACGTGGCGG
CTAGCTTCGTCACGGCCGAAGAACGTGCCGGGGCAGAGAATGACATTTCA
CCGACAGGATCGGGTAGATCGGAGTGGCAAGCTCTCTTGTTGGAGACTCG
AGACGAGGCCAGGGAGAAGCAAATGGCACAGCCTCAGCTTCAGCAAGAGC
GGGACCAGGAAGAGGAGCAGCGGCGGGAACGCCAGCAACCGAGAAAGGAC
GCACAGAAAGAACGCCCCCCCAATGTGTTCGAGGCGCTCGTCCTTCAATG
GCGAAACACGGTCAACAGCAACAACGAGGCCGACGGGGCGAGACACGGAG
GCTTTGGCCTGAGGCGGCCGTTGGGGGACGGTGGAAAGATAGTCCACCAT
GCATCCGACCCTTCCCTCGTCAGCTCCGACGCAGAAGGGAGGACTGCCGG
GTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1815:1433..2936+

>mRNA_Ecto-sp13_S_contig1815.5603.1 ID=mRNA_Ecto-sp13_S_contig1815.5603.1|Name=mRNA_Ecto-sp13_S_contig1815.5603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1815:1433..2936+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACCGACTGCACTCCACCCTCCCGGCTTCGCACCGACGGTATTTCC
CGGCCTCACCAACACCGACGGCGGCGGCGGCGGCGCTTCCCCCTTGGCGA
TGTCGCTCGGCTTTCAGCTGCGAAATCACCCTCACCTCCGCCGATTCCAC
GGCGACGGGTCCGGTGGCGGCGAGGCCACCAACTCCTTCCTCGACATCGT
CAGGAAGGCTATCGTGGCCAAGGCGCGGAAAGTCCGCGACGCCATCGGCA
CGAAGAAGTACGACGAGCTCGCGCTTTTCAACAGGAAGGGGCGGCCCACG
GTTCACGTGCCCGCCGGCCGCGGTGTTACCGAGAGTGAGTGGGCCGAGCT
CGACGCCCGCCGGACCGTAAGGTTCAGCCCGAGAATAGGGGCGGTCCTGG
TGCCAACCCGGAAGGAAACCTTCCCCAAGCCCGCTGACGTGGCGGCTAGC
TTCGTCACGGCCGAAGAACGTGCCGGGGCAGAGAATGACATTTCACCGAC
AGGATCGGGTAGATCGGAGTGGCAAGCTCTCTTGTTGGAGACTCGAGACG
AGGCCAGGGAGAAGCAAATGGCACAGCCTCAGCTTCAGCAAGAGCGGGAC
CAGGAAGAGGAGCAGCGGCGGGAACGCCAGCAACCGAGAAAGGACGCACA
GAAAGAACGCCCCCCCAATGTGTTCGAGGCGCTCGTCCTTCAATGGCGAA
ACACGGTCAACAGCAACAACGAGGCCGACGGGGCGAGACACGGAGGCTTT
GGCCTGAGGCGGCCGTTGGGGGACGGTGGAAAGATAGTCCACCATGCATC
CGACCCTTCCCTCGTCAGCTCCGACGCAGAAGGGAGGACTGCCGGGTAA
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