mRNA_Ecto-sp13_S_contig18145.5599.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18145.5599.1
Unique NamemRNA_Ecto-sp13_S_contig18145.5599.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18145.5599.1 vs. uniprot
Match: D7G8C1_ECTSI (Hypothetical leucine rich repeat zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C1_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 1.420e-84
Identity = 194/224 (86.61%), Postives = 197/224 (87.95%), Query Frame = 1 
Query:    4 PVSPESSNGGRRRRGRSPSRSXXXXXSPAARKPPTTPECAPFPLPPVPPSGRLRRLCLELEPAAASGPRAGHDDGGGVRSNPSNRASLAAAARCAFPLRRLAPLLPPGLTSLEVWSANARPVPCSVQRGATSCSRERPIGRRLGRGGGSSSGGAWRMPSAAADGGN--PAGIEGAGXXXXXXXXXXXXXXXXXXXXXXXXXDASEGMASGVAVLAGPGDLLSVS 669
            PVSP SSNGGRRRRGRSPS S     SPAARK PTTPECAPFPLP VPPSGRLRRLCLEL+PAAA G  A  DDGGGVRSNPSNRAS AAAARCAFPLRRLAPLLPPGLTSLEVWSANARPVP SVQR ATS  R+RPIGRRLGR GGSSSGGAWRM SAAADG    PAGIEGA XXXXXXXXXXXXXXXXXXXXXXXX DASEG+ASGVAVLAGPGDLLSVS
Sbjct:  354 PVSPGSSNGGRRRRGRSPSGSPSRSRSPAARKTPTTPECAPFPLPAVPPSGRLRRLCLELQPAAAGGLGAVQDDGGGVRSNPSNRASPAAAARCAFPLRRLAPLLPPGLTSLEVWSANARPVPRSVQRDATSGDRKRPIGRRLGRRGGSSSGGAWRMTSAAADGDGETPAGIEGAXXXXXXXXXXXXXXXXXXXXXXXXXGDASEGVASGVAVLAGPGDLLSVS 577
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18145.5599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8C1_ECTSI1.420e-8486.61Hypothetical leucine rich repeat zinc finger prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18145contigEcto-sp13_S_contig18145:555..1225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score290.4
Seed ortholog evalue7e-76
Seed eggNOG ortholog2880.D7G8C1
Model size672
KEGG koko:K17199
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat zinc finger protein
Ec32 orthologEc-19_003920.1
Cds size669
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.5962968-CDS-Ecto-sp13_S_contig18145:554..12231681462936.5962968-CDS-Ecto-sp13_S_contig18145:554..1223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18145 555..1223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18145.5599.1prot_Ecto-sp13_S_contig18145.5599.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18145 555..1223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18145.5599.1

>prot_Ecto-sp13_S_contig18145.5599.1 ID=prot_Ecto-sp13_S_contig18145.5599.1|Name=mRNA_Ecto-sp13_S_contig18145.5599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
SPVSPESSNGGRRRRGRSPSRSPSRSRSPAARKPPTTPECAPFPLPPVPP
SGRLRRLCLELEPAAASGPRAGHDDGGGVRSNPSNRASLAAAARCAFPLR
RLAPLLPPGLTSLEVWSANARPVPCSVQRGATSCSRERPIGRRLGRGGGS
SSGGAWRMPSAAADGGNPAGIEGAGSSSAKGAGSGRQRSGGGGGDNGDGG
DASEGMASGVAVLAGPGDLLSVS
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mRNA from alignment at Ecto-sp13_S_contig18145:555..1225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18145.5599.1 ID=mRNA_Ecto-sp13_S_contig18145.5599.1|Name=mRNA_Ecto-sp13_S_contig18145.5599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=671bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18145:555..1225+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCAGTTTCCCCCGAGAGTTCCAACGGAGGCCGACGGCGCCGGGGACG
ATCGCCGTCCAGGTCGCCGTCGCGGTCACGCTCGCCGGCGGCGCGAAAGC
CTCCCACCACGCCGGAATGCGCGCCGTTCCCCCTACCCCCTGTCCCGCCG
TCCGGTCGCCTCCGGCGACTGTGCTTGGAACTCGAACCGGCAGCAGCGAG
TGGGCCACGGGCAGGGCACGATGATGGGGGTGGAGTGCGGTCGAACCCCA
GCAACAGAGCGAGTCTGGCAGCAGCCGCGAGGTGTGCGTTTCCGCTCCGG
CGGCTGGCCCCGCTCCTGCCCCCGGGGCTCACCTCTCTCGAAGTCTGGTC
TGCCAACGCCCGCCCGGTGCCTTGCTCGGTACAGCGGGGCGCGACCAGCT
GCAGCCGGGAGCGACCGATCGGGCGCAGGCTTGGAAGGGGAGGCGGTAGC
AGTAGCGGCGGTGCTTGGCGAATGCCCTCGGCGGCAGCAGACGGGGGTAA
TCCGGCCGGGATCGAGGGGGCGGGAAGCAGTAGCGCCAAGGGCGCGGGCA
GCGGAAGGCAGAGATCGGGCGGCGGCGGCGGCGATAACGGCGATGGGGGC
GATGCATCCGAGGGCATGGCGAGCGGGGTGGCCGTGCTGGCGGGCCCGGG
AGACCTGCTGAGCGTGTCGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18145:555..1225+

>mRNA_Ecto-sp13_S_contig18145.5599.1 ID=mRNA_Ecto-sp13_S_contig18145.5599.1|Name=mRNA_Ecto-sp13_S_contig18145.5599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18145:555..1225+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCAGTTTCCCCCGAGAGTTCCAACGGAGGCCGACGGCGCCGGGGACG
ATCGCCGTCCAGGTCGCCGTCGCGGTCACGCTCGCCGGCGGCGCGAAAGC
CTCCCACCACGCCGGAATGCGCGCCGTTCCCCCTACCCCCTGTCCCGCCG
TCCGGTCGCCTCCGGCGACTGTGCTTGGAACTCGAACCGGCAGCAGCGAG
TGGGCCACGGGCAGGGCACGATGATGGGGGTGGAGTGCGGTCGAACCCCA
GCAACAGAGCGAGTCTGGCAGCAGCCGCGAGGTGTGCGTTTCCGCTCCGG
CGGCTGGCCCCGCTCCTGCCCCCGGGGCTCACCTCTCTCGAAGTCTGGTC
TGCCAACGCCCGCCCGGTGCCTTGCTCGGTACAGCGGGGCGCGACCAGCT
GCAGCCGGGAGCGACCGATCGGGCGCAGGCTTGGAAGGGGAGGCGGTAGC
AGTAGCGGCGGTGCTTGGCGAATGCCCTCGGCGGCAGCAGACGGGGGTAA
TCCGGCCGGGATCGAGGGGGCGGGAAGCAGTAGCGCCAAGGGCGCGGGCA
GCGGAAGGCAGAGATCGGGCGGCGGCGGCGGCGATAACGGCGATGGGGGC
GATGCATCCGAGGGCATGGCGAGCGGGGTGGCCGTGCTGGCGGGCCCGGG
AGACCTGCTGAGCGTGTCG
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