mRNA_Ecto-sp13_S_contig18138.5595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18138.5595.1
Unique NamemRNA_Ecto-sp13_S_contig18138.5595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18138.5595.1 vs. uniprot
Match: D7FP78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP78_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 1.350e-161
Identity = 261/284 (91.90%), Postives = 264/284 (92.96%), Query Frame = 1 
Query:    1 AKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRKMMDTVKIAAAGEGKRTFESVAKVMRRQVAVKQRADEATSLEGSWFPSVMRRMLIMVQGKEGGEVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPSAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLKRAVQRANQKRAHKKGVSKKSHLGXXXXXXXXXXXXXXXRRLVGAEEVGGALEGGHXXXXXAVSIKYLGGAGAGNVSDAGSDDMSDTMSVFSVSTQLGGGQAT 852
            AKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMR+MMDTVKIAAAGEGKRTFESV KVMRRQVA KQRADEATSLEGSWFPSVMRRMLIMVQGKEGGEVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNP AQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLK+AVQRANQKRAHKKGVSKKSHLGXXXXXXXXXXXXXXX     A      LEGGH     AVSIKY+GGAG GNVSDAGSDDMSDTMSVFSVSTQLGGGQAT
Sbjct:   18 AKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRRMMDTVKIAAAGEGKRTFESVPKVMRRQVAAKQRADEATSLEGSWFPSVMRRMLIMVQGKEGGEVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPPAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLKQAVQRANQKRAHKKGVSKKSHLGXXXXXXXXXXXXXXXXXXXXA------LEGGHGHGSSAVSIKYIGGAGVGNVSDAGSDDMSDTMSVFSVSTQLGGGQAT 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18138.5595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP78_ECTSI1.350e-16191.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18138contigEcto-sp13_S_contig18138:133..2180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size856
Hectar predicted targeting categoryother localisation
Exons4
Cds size855
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.3529305-CDS-Ecto-sp13_S_contig18138:132..2701681462936.3529305-CDS-Ecto-sp13_S_contig18138:132..270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18138 133..270 +
1681462936.3630583-CDS-Ecto-sp13_S_contig18138:703..7661681462936.3630583-CDS-Ecto-sp13_S_contig18138:703..766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18138 704..766 +
1681462936.3724902-CDS-Ecto-sp13_S_contig18138:1190..13401681462936.3724902-CDS-Ecto-sp13_S_contig18138:1190..1340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18138 1191..1340 +
1681462936.3872163-CDS-Ecto-sp13_S_contig18138:1676..21801681462936.3872163-CDS-Ecto-sp13_S_contig18138:1676..2180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18138 1677..2180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18138.5595.1prot_Ecto-sp13_S_contig18138.5595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18138 133..2180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18138.5595.1

>prot_Ecto-sp13_S_contig18138.5595.1 ID=prot_Ecto-sp13_S_contig18138.5595.1|Name=mRNA_Ecto-sp13_S_contig18138.5595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp
AKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRKMMDTVKIAAA
GEGKRTFESVAKVMRRQVAVKQRADEATSLEGSWFPSVMRRMLIMVQGKE
GGEVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPSAQK
MILTCLTFVHQRRENYHDFLVEHSIKVPSSLKRAVQRANQKRAHKKGVSK
KSHLGGGGGGGGGGGGGGSSRRLVGAEEVGGALEGGHGHGSSAVSIKYLG
GAGAGNVSDAGSDDMSDTMSVFSVSTQLGGGQAT*
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mRNA from alignment at Ecto-sp13_S_contig18138:133..2180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18138.5595.1 ID=mRNA_Ecto-sp13_S_contig18138.5595.1|Name=mRNA_Ecto-sp13_S_contig18138.5595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2048bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18138:133..2180+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAAGAAGGAGTTGAAGGCAGCCGTCAAGGCGTACGTTCTGCGGCAGGT
CAGCCTGGACAAGGACTTGTCAGAATCTATCAGCCGGAGGGACTTCGACT
GGGACGAGGACATGAGGAAAATGATGGACACTGTAAAGGTGCGGTTTCAT
GCAGCCCTACGACCTCTACCCTCAAACCGCTGCCCCCAACTAACTGTGAC
AATTTCCCTTAAAGGCTTAATTGCCGGTACAAGTCCTTCGTGTTAGTCGG
AACTGCTGTACCTGGTGTAAGCTTGTTCGAGTCCGGCTGTCACCGAAATA
GTCCGCGGGAATGGCCAGTCATACGCAGCTCAATAGGAACTAATACCGGA
CGTAGCGAGCGCCTGCAGGCGAGTTTAGTCCGTAGACAACCCGTGGGCCG
TTGGCGAGCGCCTTTGGCACATATCTTGCGCCTCTGAGAAAAGCTCAATT
AGCGTCCAACACTATGCCTCTTCCCAATCTCATAAAAATAAATAAACCCG
TTGCAGTGCTAATGCCTCCCCCCCCCCGGCTATCACCACTTTTTTCTCGG
TCCGTGCAACCTATCCATCAGATTGCGGCAGCCGGAGAAGGAAAACGGAC
GTTCGAGAGCGTGGCCAAGGTCATGCGTCGGCAGGTGAAAAACAAAATCG
TGTAGTAGGCGCTTGACACCGACACTTCGCCGAAAAAAGCCTGCACGTTT
AATTACCATCTAAAGTGCCCCCCACTCCCAAAAGGCGGTGAGAATCTAGC
GGTGTGTGACAGACACCACAATTCACAGCCTTGATTTTATCTTTCAGATA
GACAGCAGTTTGTTGTGGCGCATCGTGAAAAAAAATCTGAAACAGGAAAT
CTCAGTCGCTTCTCACATCAAATTTGTGCGAAGATGCGATCGAGACACAC
GATGCTCTTGTGCCCAAAGTCACCACCACCACCACCAACGGGATGCTTTA
CGCTTCGTAGATGCAGGTAGTTGCGGACCAACAGTAACAGCAAACGCCAT
ACCACATCGAAAGCCACCCATCACCAACAAAAGTCGCGGCGCTTCGTGGC
TGACTCAGGTGGCTGTGAAGCAACGCGCTGACGAGGCGACTAGTCTGGAG
GGGTCTTGGTTTCCGTCCGTGATGAGACGGATGTTAATCATGGTACAGGG
AAAGGAAGGGGGCGAGGTACCGCGGTGTATGACCAAGCTTGCGGCTGCCT
TGCACAAGGTACTGTGCCATGAATCGTTGGCACGCTTGAGATGCTGGGGC
ATTGCTGAGCTCTCTCCACGCACGGTTTCGGTTTGGTGTTTGTTGTTCTG
TTTATCAGCGGCACGAGCGAATCGGCGGAAACAATCTCTTGTTCTTCTCA
ACTGTGTCATCCGCCAACGTAAAGTGGTATTGGATGGAATGGGACGGGAC
GGGACGAGACAAGCACCAAGCACAAGCAAGCACGGTATTTCTGTGCAGAT
GCTTCGGCGTTCAAAGTTACCGTTGCCAGTTCTGGTGTAGCGAGCGGCGG
GCGACCAACAAACGTCGCCCTTGCACCACCCGATACTCCGACAGGTGCTC
ACGAGCGGACACGCGGTGACCCCGTACATCTTCTGGTCGCTGGTGGGCGC
CTCGTTCCTGCCGGAGGATCACCAGAACCCCTCCGCCCAGAAAATGATCC
TCACCTGCTTGACCTTCGTCCACCAGCGGCGAGAAAACTACCACGATTTC
CTGGTCGAACACTCCATAAAGGTGCCCAGCTCGCTGAAACGGGCCGTGCA
GAGGGCGAACCAAAAACGGGCCCACAAGAAAGGGGTCTCGAAGAAGTCGC
ACCTTGGTGGCGGCGGTGGCGGCGGTGGCGGCGGTGGCGGCGGCGGTAGT
TCTCGTCGGCTGGTCGGGGCGGAGGAAGTCGGTGGTGCGCTAGAAGGCGG
TCACGGTCATGGAAGCTCAGCCGTAAGCATCAAGTATCTTGGCGGCGCGG
GCGCGGGGAACGTCAGCGACGCCGGGAGCGACGACATGAGCGACACCATG
TCCGTGTTCAGCGTTTCGACACAGCTCGGCGGTGGCCAAGCTACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18138:133..2180+

>mRNA_Ecto-sp13_S_contig18138.5595.1 ID=mRNA_Ecto-sp13_S_contig18138.5595.1|Name=mRNA_Ecto-sp13_S_contig18138.5595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18138:133..2180+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAAGAAGGAGTTGAAGGCAGCCGTCAAGGCGTACGTTCTGCGGCAGGT
CAGCCTGGACAAGGACTTGTCAGAATCTATCAGCCGGAGGGACTTCGACT
GGGACGAGGACATGAGGAAAATGATGGACACTGTAAAGATTGCGGCAGCC
GGAGAAGGAAAACGGACGTTCGAGAGCGTGGCCAAGGTCATGCGTCGGCA
GGTGGCTGTGAAGCAACGCGCTGACGAGGCGACTAGTCTGGAGGGGTCTT
GGTTTCCGTCCGTGATGAGACGGATGTTAATCATGGTACAGGGAAAGGAA
GGGGGCGAGGTACCGCGGTGTATGACCAAGCTTGCGGCTGCCTTGCACAA
GGTGCTCACGAGCGGACACGCGGTGACCCCGTACATCTTCTGGTCGCTGG
TGGGCGCCTCGTTCCTGCCGGAGGATCACCAGAACCCCTCCGCCCAGAAA
ATGATCCTCACCTGCTTGACCTTCGTCCACCAGCGGCGAGAAAACTACCA
CGATTTCCTGGTCGAACACTCCATAAAGGTGCCCAGCTCGCTGAAACGGG
CCGTGCAGAGGGCGAACCAAAAACGGGCCCACAAGAAAGGGGTCTCGAAG
AAGTCGCACCTTGGTGGCGGCGGTGGCGGCGGTGGCGGCGGTGGCGGCGG
CGGTAGTTCTCGTCGGCTGGTCGGGGCGGAGGAAGTCGGTGGTGCGCTAG
AAGGCGGTCACGGTCATGGAAGCTCAGCCGTAAGCATCAAGTATCTTGGC
GGCGCGGGCGCGGGGAACGTCAGCGACGCCGGGAGCGACGACATGAGCGA
CACCATGTCCGTGTTCAGCGTTTCGACACAGCTCGGCGGTGGCCAAGCTA
CGTGA
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