mRNA_Ecto-sp13_S_contig18131.5593.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18131.5593.1
Unique NamemRNA_Ecto-sp13_S_contig18131.5593.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18131.5593.1 vs. uniprot
Match: D7FYY1_ECTSI (Protein serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY1_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 2.380e-73
Identity = 126/206 (61.17%), Postives = 153/206 (74.27%), Query Frame = 1 
Query:    1 RLAKDPHPNTVRAVSIDDRAAAVSMPFLLPRVYDNFGQMLNDGDWAMADMLSCLQQVASGVRHMHKAGIGHGDLTPPNILLVDDGYGGCIPHATSV-LPERSERFVPR*WELSGACLLR*CRHRCQLAQAR-TRSRCAMAFTVCVTPDEVQANMLVSPHLFTAAEAKAKKTLKAKGGGPLAMTQRDIFERNVMERTMSTRAFTTLM 612
            RLAK PHPN + A++IDDR AAV MP LLPR + +FGQ+LNDGDW+M   LSCLQQVASGVRHMH+AGIGHGDLTPPNILLVDDG G C+P  +   L        P+     G+  L   +   + ++++ T +   MAFTVCVTPD+VQANM +SP LFT AEAKAKK L+AKG GP AM +RD+FERN+MERTMSTRAF +L+
Sbjct:  453 RLAKSPHPNVIGAIAIDDREAAVGMPILLPRAHGDFGQVLNDGDWSMTQKLSCLQQVASGVRHMHEAGIGHGDLTPPNILLVDDGDGECVPKISDFGLARALGEMRPKMMGTLGSMPLEVMQAPVRTSESQDTFAMGVMAFTVCVTPDKVQANMFISPDLFTVAEAKAKKALEAKGTGPFAMAERDLFERNMMERTMSTRAFESLL 658
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18131.5593.1 vs. uniprot
Match: A0A6H5JF73_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF73_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.210e-68
Identity = 122/206 (59.22%), Postives = 150/206 (72.82%), Query Frame = 1 
Query:    1 RLAKDPHPNTVRAVSIDDRAAAVSMPFLLPRVYDNFGQMLNDGDWAMADMLSCLQQVASGVRHMHKAGIGHGDLTPPNILLVDDGYGGCIPHATSV-LPERSERFVPR*WELSGACLLR*CRHRCQLAQARTR-SRCAMAFTVCVTPDEVQANMLVSPHLFTAAEAKAKKTLKAKGGGPLAMTQRDIFERNVMERTMSTRAFTTLM 612
            RLA+ PHPN + A++IDDR AAV MP LLPR + +FGQ+LNDGDW+M   LSCLQQV SGVRHMH+AGIGHGDLT PNILLVDDG G C+P  +   L        P+     G+  L   +   + ++++   +   MAFTVCVTP++VQANM +SP+LFTAAEAKAKK L+AKG GP AM +RD+FER VMERTMSTRAF  L+
Sbjct:  894 RLAESPHPNVIGAIAIDDREAAVGMPILLPRAHGDFGQVLNDGDWSMTQKLSCLQQVTSGVRHMHQAGIGHGDLTSPNILLVDDGDGECVPKISDFGLARALGEMRPKMMGTLGSMPLEVMQASVRTSESQDAFAMGVMAFTVCVTPEKVQANMFISPYLFTAAEAKAKKALEAKGTGPFAMAERDLFERKVMERTMSTRAFEALL 1099
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18131.5593.1 vs. uniprot
Match: D7FYH0_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH0_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.750e-48
Identity = 92/143 (64.34%), Postives = 103/143 (72.03%), Query Frame = 1 
Query:  190 MHKAGIGHGDLTPPNILLVDDGYGGCIPHATSV-LPERSERFVPR*WELSGACLLR*CRHRCQLAQAR-TRSRCAMAFTVCVTPDEVQANMLVSPHLFTAAEAKAKKTLKAKGGGPLAMTQRDIFERNVMERTMSTRAFTTLM 612
            MHKAGIGH DLTPPNILLVDDGYGGCIP  +   L        P+     G+  L   +       ++ T +  AMAF +CVTPD+VQANM +SPHLFTAAEAKAKK L+AKGGGPLAMT RDIFERNVMERTMST AFTTLM
Sbjct:    1 MHKAGIGHWDLTPPNILLVDDGYGGCIPQVSDFGLARALGEMRPKMMGTLGSMPLEVMQASVPACPSQDTFAMGAMAFIICVTPDKVQANMFISPHLFTAAEAKAKKALEAKGGGPLAMTLRDIFERNVMERTMSTGAFTTLM 143
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18131.5593.1 vs. uniprot
Match: A0A6H5JF80_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF80_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 7.460e-36
Identity = 91/212 (42.92%), Postives = 107/212 (50.47%), Query Frame = 1 
Query:    1 RLAKDPHPNTVRAVSIDDRAAAVSMPFLLPRVYDNFGQMLNDGDWAMADML--------SCLQQVASGVRHMHKAGIGHGDLTPPNILLVDDGYGGCIPHATSVLPERSERFVPR*WELSGACLLR*CRHRCQLAQARTRSRCAMAFTVCVTPDEVQANMLVSPHLFTAAEAKAKKTLKAKGGGPLAMTQRDIFERNVMERTMSTRAFTTLM 612
            RLAK+PHPN + AV    +  +V + F   R + +FGQMLNDGDW +A  L        S    VASG+RH+HKAG GHGDLTPPNILLVDDG GGC+P                                                              VS      AEAKAKKTL+A GGGPLAMTQ + FERN+MERTM+T  FTTL+
Sbjct:   44 RLAKNPHPNIIGAV----QPLSVCLSFY-SRAHGDFGQMLNDGDWVIAGKLRGRFAAYCSVADIVASGMRHIHKAGTGHGDLTPPNILLVDDGCGGCVPQ-------------------------------------------------------------VSDFGLARAEAKAKKTLQANGGGPLAMTQINTFERNLMERTMATGVFTTLI 189
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18131.5593.1 vs. uniprot
Match: A0A6H5L7R5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.950e-32
Identity = 84/190 (44.21%), Postives = 101/190 (53.16%), Query Frame = 1 
Query:    1 RLAKDPHPNTVRAVSIDDRAAAVSMPFLLPRVYDNFGQMLNDGDWAMADMLSCLQQVASGVRHMHKAGIGHGDLTPPNILLVDDGYGGCIPHATSV-----------------LPERSERFVPR*WELSGACLLR*CRHRC---------QLAQAR--------TRSRCAMAFTVCVTPDEVQANMLVSP 468
            RL  +PHPN V AV+IDDRAAAV MP LLPR   +F Q+L    W M   LSCLQQVA GVRHMHKAGIGHGDL P NILL D G G  +P  +                   L  R ++  PR    +    L   R +          ++ QA         T +   MAFTVCVTP+++QANM +SP
Sbjct:  612 RLVNNPHPNIVGAVAIDDRAAAVDMPILLPRANGDFEQVLKHDGWTMPAKLSCLQQVAYGVRHMHKAGIGHGDLKPANILLFDGGGGRFLPKISDFGFARGIGTNLPKPGHXNLTTRRDKSTPRPCPNNTDSALGEMRPKMMGTIGSMPLEVMQASVPTYPRQDTFAMGVMAFTVCVTPNKMQANMFISP 801
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18131.5593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYY1_ECTSI2.380e-7361.17Protein serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A6H5JF73_9PHAE1.210e-6859.22Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FYH0_ECTSI1.750e-4864.34Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5JF80_9PHAE7.460e-3642.92Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L7R5_9PHAE2.950e-3244.21Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18131contigEcto-sp13_S_contig18131:123..2873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score120.6
Seed ortholog evalue3.6e-25
Seed eggNOG ortholog2880.D7FYY1
Model size613
KEGG koko:K05410
KEGG Pathwayko04014,ko04137,ko04620,ko04621,ko04622,ko04623,ko04657,ko05160,ko05161,ko05162,ko05164,ko05165,ko05167,ko05168,ko05169,map04014,map04137,map04620,map04621,map04622,map04623,map04657,map05160,map05161,map05162,map05164,map05165,map05167,map05168,map05169
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.IkappaB kinase activity
EggNOG OGsCOG0515@1,KOG4250@2759
EC2.7.11.10
Cds size252
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18131.5593.1prot_Ecto-sp13_S_contig18131.5593.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18131 1544..2801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.2060142-UTR-Ecto-sp13_S_contig18131:122..1741681462936.2060142-UTR-Ecto-sp13_S_contig18131:122..174Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18131 123..174 -
1681462936.2175503-UTR-Ecto-sp13_S_contig18131:854..9471681462936.2175503-UTR-Ecto-sp13_S_contig18131:854..947Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18131 855..947 -
1681462936.2324276-UTR-Ecto-sp13_S_contig18131:1399..15431681462936.2324276-UTR-Ecto-sp13_S_contig18131:1399..1543Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18131 1400..1543 -
1681462936.2774618-UTR-Ecto-sp13_S_contig18131:2801..28731681462936.2774618-UTR-Ecto-sp13_S_contig18131:2801..2873Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18131 2802..2873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.2422156-CDS-Ecto-sp13_S_contig18131:1543..15701681462936.2422156-CDS-Ecto-sp13_S_contig18131:1543..1570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18131 1544..1570 -
1681462936.2512033-CDS-Ecto-sp13_S_contig18131:1882..20241681462936.2512033-CDS-Ecto-sp13_S_contig18131:1882..2024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18131 1883..2024 -
1681462936.2672615-CDS-Ecto-sp13_S_contig18131:2718..28011681462936.2672615-CDS-Ecto-sp13_S_contig18131:2718..2801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18131 2719..2801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18131.5593.1

>prot_Ecto-sp13_S_contig18131.5593.1 ID=prot_Ecto-sp13_S_contig18131.5593.1|Name=mRNA_Ecto-sp13_S_contig18131.5593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MPFLLPRVYDNFGQMLNDGDWAMADMLSCLQQVASGVRHMHKAGIGHGDL
TPPNILLVDDGYGGCIPHATSVLPERSERFVPR*
back to top

mRNA from alignment at Ecto-sp13_S_contig18131:123..2873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18131.5593.1 ID=mRNA_Ecto-sp13_S_contig18131.5593.1|Name=mRNA_Ecto-sp13_S_contig18131.5593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2751bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18131:123..2873- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCTCGCCAAGGACCCTCACCCCAACACCGTTCGGGCAGTCTCCATTGA
TGACCGGGCAGCCGCTGTCAGCATGCCTTTTCTTTTACCCAGGGTGTACG
ACAACTTTGGGCAGATGCTGAACGACGGCGACTGGGCCATGGCGGACATG
CTTAGGTATGTGTGTGTCCCAATGCCGCGGCGTTGGGGATCGTGTATGGT
TGGGGGTATGGTATGGAGTATCTCCCGCCAACGTCGCCGAATATGGAGTA
CTCATCTGCCGCATGCCTACAAGAGGTACACAAAGACCGGATTGGGAATC
ATGTTCGCCGACCTTGGAACCATACGGGGTAGCTCAAGAAGGTAGAGGGG
GGTGTCTCGAGACGCTCGTGGGGTCGGCAGAGACATCCCGTGGGGGTGCT
TTCGACCTAAATGCGAACTCAGAACTTCTCGCACTCAAGATAATACATGA
TACGGAGGCTGTGCGTTATGTAGACGAACGTACGTGTTGAACTGAAAAGA
ATCGATCGATCAGTCGAAGGTTCTTCGAAAGAAACGGAAAAATGGTGTGT
TCCAACATCGATGAGTCAAGACCCAGAGGAGACGTTTTTCAGCGTATTGC
AGCGTGGCAGACATCGTTCGTTGCACATGAACAGACCACCGCTGTGTGTC
TCGTGGTGTGTCCCGATTAACACGATGTGAAGAATAACGTCAGCTTGTTT
TGTTGTCTATCTGATCTGAGATATTCTCATCCTGGTGCCTTCAATTCCAG
CTACAAACCGTCGGTTTGCACATCAAAGGCAGTCTGTATCATTATTGTCC
TCTCTGCTCTGACTGGTTGCACACCTCCCCCGTGTACCTACCTCGACAGC
TGCTTGCAGCAGGTCGCCTCCGGCGTGCGACACATGCACAAGGCAGGCAT
CGGCCACGGGGACCTCACGCCGCCAAACATCCTGCTGGTCGACGATGGGT
ACGGGGGATGCATCCCTCACGCGACTTCTGTCTTGCCCGAGGTAAAAGGG
AATCAGACACACCACCAATAGACCATGGTTCGGTGGTGGGGTAGGGTGCA
GCACCACTCGATACGGCGAGGTACTAGAGAGAGATGCACCGCGCCGGTGT
CACGTTTTAACCTGAGAATTGTGTGTAGTTCTTCTGAATTGACGTGGTTG
TACGCGGGGAGGGAGTGAATCATCATGCGGCGGTGCACCTGACAGGACTT
CGAGGTGTAATTTCCCACATGGGAACCATAACCCCCAATACCTACAACGA
GGCAAGACAAGAGTAACACCCTTCCCCCCGGCCCTCTCCTCCTACTGATC
TAGCGCTCGGAGAGATTTGTCCCAAGATGATGGGAACTCTCGGGAGCATG
CCTCTTGAGGTGATGCAGGCATCGGTGCCAACTTGCCCAAGCCAGGACAC
GTTCGCGATGTGCGATGGCCTTCACCGTCTGCGTGACCCCCGACGAGGTT
CAGGCGAACATGCTCGTCTCGCCGGTGAGAGGGTGAAGGTAGGATGGCGT
GTAGGGCTCTCGTCTCACCGGTACCAACGTGGCTCTACGTTGACCTCCGC
TGTTCGAGGTGGACCATCTACACTCCCTCCCGCAGAACGGCGGCATCGAC
AGCAGGGACAACAACAGCAACAACCACAAGCATTATCGCCGAGAGAAGTA
GTACGTCAACCGTGCAACACCACGGGATCATGCAATCCTCCCGTCTTCTA
GGAATCAAGCCCGATGTTTGCGGGGGAATGTCTTCGAGTTTATTGCATGT
GAAAACGCGTACTACAACAACTCTACCGCATGAACAAACTGTTGCTTGTG
CACTGCCAAGGGGCGGCACCAAGGCGATACTGGCTGCCATCGCTATCTAT
CACGTCTTACGGTCTTTCATCCGTTTCGATGATGCCTCTCGATTTCGGTG
CGTCCCTCTGTCATTAAACGGAAAAGCACCTCTTCACTGCAGCGGAGGCG
AAGGCCAAGAAGACCCTTAAGGCGAAGGGGGGGGGTCCGTTGGCCATGAC
ACAGAGAGACATCTTCGAGGTGTGTTTCAGCCTGCCTTGCTTGTGCGCCA
CCTTAGCGCACTCAAGCATTTTCCATTCCGTGTTCATGCTGCCACGGCCA
AGGCCATTCGAGGAAGAGGGGGGGGATACTTACCCCCCCTGCAGGCCGGT
CGGTAGGTAGCAATTGTGTGGGCATGCACGAAGGAGGCCTAGGTTTTCAT
CCTCCGTGTAAGGCTTTCGTTGTGTTTCCGGCTACTGTAGACCTATAGTA
GTAGTGTGTTTCCGACAGTGTGATCCCGAATCTTGTTCTTCTACTAAAAG
GGGGCGAAAAGATAAGAGCAAAAAATACGAAAACTTCTACTAAAAGAGGG
GCGAAAAGATAACAGCAAAAAGTACGAAAAGCGCGGAGGGGAAGCGTTCC
TCCTAGTCCAATGAGAACAACGAGTGAGTGCCTCCCGTGGACATGAGCTT
TGGAGAAAGTGCATGTTCGAGAGGTTTTTCGCGATCTTGATTGACGTGTG
CTACGGTGTAGGTCAAGCGCGGACTACCCATACACAATCACCATCGCGCT
GGCGCAAACTGAAACAAAGCGTAAAACCGCCGTGTGCATGCTGTGCACCA
TGCACCTTGCTCCGTTGACATTTTACATCCACCCCCTCCTCCCCAAAAAT
ATCTGGTGCTACATCGTACGAACACGCCTGGCGCTTCTTGTTTGATTAGA
GGAACGTAATGGAGAGGACGATGTCGACACGAGCCTTCACTACACTTATG
A
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18131:123..2873-

>mRNA_Ecto-sp13_S_contig18131.5593.1 ID=mRNA_Ecto-sp13_S_contig18131.5593.1|Name=mRNA_Ecto-sp13_S_contig18131.5593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18131:123..2873- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTTTCTTTTACCCAGGGTGTACGACAACTTTGGGCAGATGCTGAA
CGACGGCGACTGGGCCATGGCGGACATGCTTAGCTGCTTGCAGCAGGTCG
CCTCCGGCGTGCGACACATGCACAAGGCAGGCATCGGCCACGGGGACCTC
ACGCCGCCAAACATCCTGCTGGTCGACGATGGGTACGGGGGATGCATCCC
TCACGCGACTTCTGTCTTGCCCGAGCGCTCGGAGAGATTTGTCCCAAGAT
GA
back to top