mRNA_Ecto-sp13_S_contig18126.5589.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18126.5589.1
Unique NamemRNA_Ecto-sp13_S_contig18126.5589.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18126.5589.1 vs. uniprot
Match: A0A6H5KVN8_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN8_9PHAE)

HSP 1 Score: 590 bits (1521), Expect = 1.170e-189
Identity = 315/354 (88.98%), Postives = 325/354 (91.81%), Query Frame = 1
Query:    1 CDGKGPESVPTAMMLLTRAGENDNTDGRGHKGSPIAAEETVPAVSATSEGHEYSLLAVSLSEARRAMDVISQGDISELRSLVRPPAAVVHVTSIALLLLEGKTTEKAAAVPMSWAIARAAMCRADLLPRLRALDPRGVTPQQLSSVRPALERSSLDPAVVRPLCIAAGNLCLWILGVIQANRWLTGSGHSRTNVVPVDGDIRRWGYDHVRKHRGTVVVQRQQPFPQQKYPRRTRWASPSRAPAGRKRCRMENHAVRVAPSSNSRGGREEASSVSLERTSTVGFGAFGPATASPNLGGGANSGFGVSSDQDDAVGATSVASAASSDKRSPCRRKKNLGGRVAAQAFTSGRLANGG 1062
            CD KG  S+PTAMMLLTRAGE DNTDG+GHK SPIAAE TVPAVSA+SEGHEYS LAVSLS+ARRAMDVISQGDISELRSLVRPPA VVHV SIALLLLEGKTTEKA AVP+SWAIAR AMCRA LLPRLRALDPR VTPQQLS V PALERSSLDPAVVRPLC AAGNLCLWILGVIQANRWLTGSGHSRTNVVPVDGDIRRWGYDHV+KHRGT VVQRQQPFPQQKYPRRTRWASPSRAPAGR+RCR+ENHAVR APSSN RGGRE  +SVSLE TSTVGFG FGPATASPNLGG ANSGFGVSSDQDDAVGATSVA AAS +KR PCRRKKNL GRVAAQAFTSGRLAN G
Sbjct:  710 CDEKGAGSMPTAMMLLTRAGEKDNTDGQGHKESPIAAE-TVPAVSASSEGHEYSSLAVSLSKARRAMDVISQGDISELRSLVRPPATVVHVASIALLLLEGKTTEKATAVPVSWAIARTAMCRAGLLPRLRALDPRAVTPQQLSLVGPALERSSLDPAVVRPLCNAAGNLCLWILGVIQANRWLTGSGHSRTNVVPVDGDIRRWGYDHVKKHRGTAVVQRQQPFPQQKYPRRTRWASPSRAPAGRRRCRLENHAVRAAPSSNGRGGREAPNSVSLEPTSTVGFGVFGPATASPNLGGEANSGFGVSSDQDDAVGATSVAPAASLEKRLPCRRKKNLCGRVAAQAFTSGRLANAG 1062          
BLAST of mRNA_Ecto-sp13_S_contig18126.5589.1 vs. uniprot
Match: D8LEN9_ECTSI (Membrane acyl-CoA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN9_ECTSI)

HSP 1 Score: 542 bits (1397), Expect = 1.100e-172
Identity = 291/354 (82.20%), Postives = 301/354 (85.03%), Query Frame = 1
Query:    1 CDGKGPESVPTAMMLLTRAGENDNTDGRGHKGSPIAAEETVPAVSATSEGHEYSLLAVSLSEARRAMDVISQGDISELRSLVRPPAAVVHVTSIALLLLEGKTTEKAAAVPMSWAIARAAMCRADLLPRLRALDPRGVTPQQLSSVRPALERSSLDPAVVRPLCIAAGNLCLWILGVIQANRWLTGSGHSRTNVVPVDGDIRRWGYDHVRKHRGTVVVQRQQPFPQQKYPRRTRWASPSRAPAGRKRCRMENHAVRVAPSSNSRGGREEASSVSLERTSTVGFGAFGPATASPNLGGGANSGFGVSSDQDDAVGATSVASAASSDKRSPCRRKKNLGGRVAAQAFTSGRLANGG 1062
            CDGKG  SVPTA MLLTRAGENDN DGRGHK SPIAAEE+VPAVSA+SEGHE+S LAVSLSEARRAMDVISQGDISELRSL RPP+AVVHV SIALLLLEGKTTEKAAA P+SWAIARAAMCRADLLPRLRALDPR V PQQLSS+ PALERSSLDPAVVRPLC AAGNLCLW+LGV QANRWLTGSGHSRTNVVPVDGDIRRWGYDHVRKHRG  VVQRQQPFP+QK PRRTRWAS SRAPAGR+RCRMENHAVR  PS+N RGGRE  SSVS ERTSTVGFGAFGPATASP LGG                         SSDKRSPCRRKKNLG RVAAQAF SGRLAN G
Sbjct:  659 CDGKGAGSVPTAKMLLTRAGENDNKDGRGHKESPIAAEESVPAVSASSEGHEHSSLAVSLSEARRAMDVISQGDISELRSLARPPSAVVHVVSIALLLLEGKTTEKAAAAPVSWAIARAAMCRADLLPRLRALDPRAVAPQQLSSLGPALERSSLDPAVVRPLCNAAGNLCLWVLGVFQANRWLTGSGHSRTNVVPVDGDIRRWGYDHVRKHRGIAVVQRQQPFPKQKSPRRTRWASSSRAPAGRRRCRMENHAVRAVPSNNGRGGREAGSSVSPERTSTVGFGAFGPATASPELGGXXXXXXXXXXXXXXXXXXXXXXXXXSSDKRSPCRRKKNLGDRVAAQAFASGRLANAG 1012          
BLAST of mRNA_Ecto-sp13_S_contig18126.5589.1 vs. uniprot
Match: A0A6H5JQG5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.410e-12
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  178 LSEARRAMDVISQGDISELRSLVRPPAAVVHVTSIALLLLEGKTTEKAAAVPMSWAIARAAMCRAD-LLPRLRALDPRGVTPQQLSSVRPALERSSLDPAVVRPLCIAAGNLCLWILGVIQANRWLTGSGHSRTNVV 585
            L  A+ A+D +++GDI ELRS  +PPAAV  VT+  ++ L G+    AA     W  AR  M   D L   +  L+   +   Q   +       +  P +V  + + A  +C W+LGV++A+RW TG GHSR++ +
Sbjct:  729 LMRAQAAIDGLTRGDICELRSFAKPPAAVNMVTAALMIALTGQGEPTAA----GWLSARRYMTNIDKLFTAISGLNLNTLRVSQTRKLETYTRNPAFRPEIVACVSLPASKICAWVLGVLEAHRWRTGRGHSRSSTL 861          
BLAST of mRNA_Ecto-sp13_S_contig18126.5589.1 vs. uniprot
Match: D8LNE7_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE7_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.450e-10
Identity = 53/165 (32.12%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  178 LSEARRAMDVISQGDISELRSLVRPPAAVVHVTSIALLLLEGKTTEKAAAVPMSWAIARAAMCRAD-LLPRLRALDPRGVTPQQLSSVRPALERSSLDPAVVRPLCIAAGNLCLWILGVI--------QANRWLTGSGHSRTNVV---PVDGDIRRWGYDHVRKH 636
            L  A+ A+D +++GDI ELRS  +PPAAV  VT+  ++ L G+    AA     W  AR  M   D L   +  L+   +   Q   +       +  P +V  + + A  +C W+LGV+        +A+RW TG GHSR++ +   P   D    G  H +KH
Sbjct:  602 LMRAQAAIDGLTRGDICELRSFAKPPAAVNMVTAALMIALTGQGEPTAA----GWLSARRYMINVDKLFAAISGLNLSTLRVSQTRKLETYTRNPAFRPEIVACVSLPASKICAWVLGVLNTPISREQEAHRWRTGRGHSRSSTLTQGPGLEDNMSKGGRHQQKH 762          
BLAST of mRNA_Ecto-sp13_S_contig18126.5589.1 vs. uniprot
Match: A0A7S3HP77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HP77_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.770e-8
Identity = 47/157 (29.94%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  103 IAAEETVPAVSATSEGHEYSLLAVS-LSEARRAM-------DVISQGDISELRSLVRPPAAVVHVTSIALLLLEGKTTEKAAAVPMSWAIARAAMCRADLLP-RLRALDPRGVTPQQLSSVRPALERSSLDPAVVRPLCIAAGNLCLWILGVIQANR 546
            +A+ E   A  A+++  +  L A S L+EA+ AM       D +S+G ++EL+SL  PP+ V +VTS  L+L+E +           W  A+  M   D    RL++     +T  ++  + P L +   DP ++    +AA NLC W++ +++ NR
Sbjct: 1336 LASAEAEKAAIASADAAKIELQAESELAEAKPAMEAAKDAVDCLSKGMLTELKSLSNPPSGVDNVTSAVLILIEKEYKN------FKWDRAKKMMANVDQFKARLQSYRGEDMTEDEVKRLEPFLSKEDFDPKLMESKSMAAANLCNWVVNIVKYNR 1486          
BLAST of mRNA_Ecto-sp13_S_contig18126.5589.1 vs. uniprot
Match: A0A7S2B359_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B359_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.180e-8
Identity = 36/125 (28.80%), Postives = 59/125 (47.20%), Query Frame = 1
Query:  271 VTSIALLLLEGKTTEKAAAVPMSWAIARAAMCRADLLPRLRALDPRGVTPQQLSSVRPALERSSLDPAVVRPLCIAAGNLCLWILGVIQANRWLT--------GSGHSR-----TNVVPVDGDIR 606
            VTS  +++LEG+        P+ W  A+  M     L +LR + PR +T +Q++ +          P +V  +C+ A   C W+LG ++A+RWL+        G  H R     T+  P +G  R
Sbjct:    3 VTSAVMIILEGR--------PVVWGDAQKKMASTSFLGKLREVQPRELTRRQVTYLEAYTRSPLFRPEIVEKVCLCAAKFCAWVLGTLEAHRWLSVDKEGVGGGKAHERLSLLRTSHTPPEGSTR 119          
BLAST of mRNA_Ecto-sp13_S_contig18126.5589.1 vs. uniprot
Match: A0A482SV59_9ARCH (SAM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV59_9ARCH)

HSP 1 Score: 59.3 bits (142), Expect = 7.290e-6
Identity = 47/170 (27.65%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   79 GRGHKGSPIAAEETVPAVSATSEGHEYSLLAVSLSEARRAMDVISQGDISELRSLVRPPAAVVHVTSIALLLLEGKTTE-KAAAVPMSWAIARAAMCRADLLPRLRALDPRGVTPQQLSSVRPALERSSLDPAVVRPLCIAAGNLCLWILGVIQANRWLTGSGHSRTNVV 585
            GR  +GSP ++  ++ A       ++ S +  ++  A  A++ +++ D++E+RS+V+PPAAV  V    ++LL GK    K +   +S   A         L  L+  D   VT ++L+ V   ++     P  V P+   A   C W+ GV+ A R + G  H R   +
Sbjct:  212 GRRREGSPGSSITSLDA-----RPNKKSRMDQTMKAAYEAIEGLTKMDVAEIRSMVKPPAAVEVVIEAVMILLTGKYMNFKDSYKLLSGGEA--------FLTMLKDFDVADVTDKRLAMVEHYVDNPLFRPEHVLPVSHCASKFCAWVHGVVHAARHMRGVSHQRIETI 368          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18126.5589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KVN8_9PHAE1.170e-18988.98SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEN9_ECTSI1.100e-17282.20Membrane acyl-CoA binding protein n=1 Tax=Ectocarp... [more]
A0A6H5JQG5_9PHAE1.410e-1234.31SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LNE7_ECTSI1.450e-1032.12SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3HP77_9STRA7.770e-829.94Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2B359_9STRA9.180e-828.80Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A482SV59_9ARCH7.290e-627.65SAM domain-containing protein n=1 Tax=archaeon Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18126contigEcto-sp13_S_contig18126:2256..3317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score548.1
Seed ortholog evalue3e-153
Seed eggNOG ortholog2880.D8LEN9
Model size1063
KEGG koko:K10408,ko:K10413
KEGG Pathwayko04145,ko04962,ko05016,ko05132,map04145,map04962,map05016,map05132
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size1062
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.9962075-CDS-Ecto-sp13_S_contig18126:2255..33171681462935.9962075-CDS-Ecto-sp13_S_contig18126:2255..3317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18126 2256..3317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18126.5589.1prot_Ecto-sp13_S_contig18126.5589.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18126 2256..3317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18126.5589.1

>prot_Ecto-sp13_S_contig18126.5589.1 ID=prot_Ecto-sp13_S_contig18126.5589.1|Name=mRNA_Ecto-sp13_S_contig18126.5589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=354bp
CDGKGPESVPTAMMLLTRAGENDNTDGRGHKGSPIAAEETVPAVSATSEG
HEYSLLAVSLSEARRAMDVISQGDISELRSLVRPPAAVVHVTSIALLLLE
GKTTEKAAAVPMSWAIARAAMCRADLLPRLRALDPRGVTPQQLSSVRPAL
ERSSLDPAVVRPLCIAAGNLCLWILGVIQANRWLTGSGHSRTNVVPVDGD
IRRWGYDHVRKHRGTVVVQRQQPFPQQKYPRRTRWASPSRAPAGRKRCRM
ENHAVRVAPSSNSRGGREEASSVSLERTSTVGFGAFGPATASPNLGGGAN
SGFGVSSDQDDAVGATSVASAASSDKRSPCRRKKNLGGRVAAQAFTSGRL
ANGG
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mRNA from alignment at Ecto-sp13_S_contig18126:2256..3317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18126.5589.1 ID=mRNA_Ecto-sp13_S_contig18126.5589.1|Name=mRNA_Ecto-sp13_S_contig18126.5589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1062bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18126:2256..3317+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGATGGGAAGGGTCCTGAGAGCGTGCCAACGGCGATGATGTTGCTCAC GAGAGCTGGCGAGAATGATAACACAGACGGACGAGGGCACAAAGGAAGTC CCATCGCAGCGGAGGAGACTGTCCCCGCGGTCTCCGCGACAAGTGAAGGC CACGAGTACTCCTTATTGGCAGTGTCACTATCAGAAGCCAGGCGGGCAAT GGATGTCATTTCTCAGGGCGACATCTCTGAGCTGCGCTCGCTCGTGCGCC CCCCTGCCGCCGTCGTGCACGTAACTTCAATCGCCCTTCTTTTGCTTGAA GGCAAGACTACCGAGAAAGCTGCGGCTGTGCCTATGTCTTGGGCGATAGC TAGAGCGGCGATGTGCCGCGCAGATCTTCTCCCGCGCCTGCGAGCCTTAG ACCCGCGCGGGGTAACCCCTCAGCAGTTGAGCTCGGTGCGTCCGGCTCTC GAACGGTCCAGCCTCGACCCGGCCGTCGTGCGCCCCCTGTGCATTGCGGC GGGGAACCTCTGCTTGTGGATTCTCGGCGTAATTCAGGCGAACCGGTGGC TGACCGGGAGCGGTCATTCCCGCACAAACGTCGTCCCAGTCGACGGCGAC ATCAGACGTTGGGGGTATGACCATGTCAGGAAACACAGGGGCACCGTAGT TGTTCAGCGGCAGCAGCCGTTCCCACAACAGAAATATCCCAGGCGGACTA GGTGGGCGAGCCCTTCCCGCGCCCCGGCTGGAAGGAAACGTTGTCGAATG GAGAATCACGCGGTCAGGGTAGCGCCGAGCAGCAACAGCAGAGGCGGCAG GGAAGAAGCAAGTTCAGTGTCCCTCGAGCGAACCTCCACCGTGGGCTTCG GGGCGTTTGGGCCCGCTACTGCTTCGCCAAATCTCGGCGGAGGAGCCAAC TCTGGGTTTGGAGTGTCGAGCGACCAAGACGATGCTGTAGGTGCTACTTC AGTAGCATCAGCGGCGTCCTCGGATAAGCGATCGCCATGTCGCAGAAAGA AAAACCTGGGTGGCCGAGTTGCGGCGCAGGCGTTTACATCCGGACGTTTA GCGAACGGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18126:2256..3317+

>mRNA_Ecto-sp13_S_contig18126.5589.1 ID=mRNA_Ecto-sp13_S_contig18126.5589.1|Name=mRNA_Ecto-sp13_S_contig18126.5589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1062bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18126:2256..3317+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGATGGGAAGGGTCCTGAGAGCGTGCCAACGGCGATGATGTTGCTCAC
GAGAGCTGGCGAGAATGATAACACAGACGGACGAGGGCACAAAGGAAGTC
CCATCGCAGCGGAGGAGACTGTCCCCGCGGTCTCCGCGACAAGTGAAGGC
CACGAGTACTCCTTATTGGCAGTGTCACTATCAGAAGCCAGGCGGGCAAT
GGATGTCATTTCTCAGGGCGACATCTCTGAGCTGCGCTCGCTCGTGCGCC
CCCCTGCCGCCGTCGTGCACGTAACTTCAATCGCCCTTCTTTTGCTTGAA
GGCAAGACTACCGAGAAAGCTGCGGCTGTGCCTATGTCTTGGGCGATAGC
TAGAGCGGCGATGTGCCGCGCAGATCTTCTCCCGCGCCTGCGAGCCTTAG
ACCCGCGCGGGGTAACCCCTCAGCAGTTGAGCTCGGTGCGTCCGGCTCTC
GAACGGTCCAGCCTCGACCCGGCCGTCGTGCGCCCCCTGTGCATTGCGGC
GGGGAACCTCTGCTTGTGGATTCTCGGCGTAATTCAGGCGAACCGGTGGC
TGACCGGGAGCGGTCATTCCCGCACAAACGTCGTCCCAGTCGACGGCGAC
ATCAGACGTTGGGGGTATGACCATGTCAGGAAACACAGGGGCACCGTAGT
TGTTCAGCGGCAGCAGCCGTTCCCACAACAGAAATATCCCAGGCGGACTA
GGTGGGCGAGCCCTTCCCGCGCCCCGGCTGGAAGGAAACGTTGTCGAATG
GAGAATCACGCGGTCAGGGTAGCGCCGAGCAGCAACAGCAGAGGCGGCAG
GGAAGAAGCAAGTTCAGTGTCCCTCGAGCGAACCTCCACCGTGGGCTTCG
GGGCGTTTGGGCCCGCTACTGCTTCGCCAAATCTCGGCGGAGGAGCCAAC
TCTGGGTTTGGAGTGTCGAGCGACCAAGACGATGCTGTAGGTGCTACTTC
AGTAGCATCAGCGGCGTCCTCGGATAAGCGATCGCCATGTCGCAGAAAGA
AAAACCTGGGTGGCCGAGTTGCGGCGCAGGCGTTTACATCCGGACGTTTA
GCGAACGGAGGC
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