mRNA_Ecto-sp13_S_contig18126.5586.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18126.5586.1
Unique NamemRNA_Ecto-sp13_S_contig18126.5586.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18126.5586.1 vs. uniprot
Match: D8LEN9_ECTSI (Membrane acyl-CoA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN9_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 7.060e-53
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 2 
Query:    2 TLQTAEHVIAMARRKAGEYFPITSKMLHTIVKGGVVPADFDCIYPFKGAKDFDITAEFANYQHQYILDDTGGGVSTGTTHRRVALETSGSKQGK 283
            TLQTAE VIAMARRK GEYFPITSKMLHTIVKGGVVPADFDCIYPFKGAKDFDITAEFANYQHQYILDDTGGGVSTGTTHRRVALETSGSKQG+
Sbjct:   99 TLQTAEQVIAMARRKTGEYFPITSKMLHTIVKGGVVPADFDCIYPFKGAKDFDITAEFANYQHQYILDDTGGGVSTGTTHRRVALETSGSKQGQ 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18126.5586.1 vs. uniprot
Match: A0A6H5KVN8_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN8_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.140e-51
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 2 
Query:    2 TLQTAEHVIAMARRKAGEYFPITSKMLHTIVKGGVVPADFDCIYPFKGAKDFDITAEFANYQHQYILDDTGGGVSTGTTHRRVALETSGSKQGK 283
            TLQTAEHVIAMARRK GEYFPITSKMLHTIVKGGVVPADFDCIYPFKG KDFDITAEFANYQHQYILDD GGGVSTGTTHRRV LE SGSK+GK
Sbjct:  131 TLQTAEHVIAMARRKTGEYFPITSKMLHTIVKGGVVPADFDCIYPFKGGKDFDITAEFANYQHQYILDDIGGGVSTGTTHRRVGLEISGSKEGK 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18126.5586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEN9_ECTSI7.060e-5396.81Membrane acyl-CoA binding protein n=1 Tax=Ectocarp... [more]
A0A6H5KVN8_9PHAE2.140e-5193.62SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18126contigEcto-sp13_S_contig18126:175..457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score173.7
Seed ortholog evalue3.6e-41
Seed eggNOG ortholog2880.D8LEN9
Model size284
KEGG koko:K10408,ko:K10413
KEGG Pathwayko04145,ko04962,ko05016,ko05132,map04145,map04962,map05016,map05132
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size252
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.854525-UTR-Ecto-sp13_S_contig18126:174..2051681462935.854525-UTR-Ecto-sp13_S_contig18126:174..205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18126 175..205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.869003-CDS-Ecto-sp13_S_contig18126:205..4571681462935.869003-CDS-Ecto-sp13_S_contig18126:205..457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18126 206..457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18126.5586.1prot_Ecto-sp13_S_contig18126.5586.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18126 206..457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18126.5586.1

>prot_Ecto-sp13_S_contig18126.5586.1 ID=prot_Ecto-sp13_S_contig18126.5586.1|Name=mRNA_Ecto-sp13_S_contig18126.5586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MARRKAGEYFPITSKMLHTIVKGGVVPADFDCIYPFKGAKDFDITAEFAN
YQHQYILDDTGGGVSTGTTHRRVALETSGSKQGK
back to top

mRNA from alignment at Ecto-sp13_S_contig18126:175..457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18126.5586.1 ID=mRNA_Ecto-sp13_S_contig18126.5586.1|Name=mRNA_Ecto-sp13_S_contig18126.5586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=283bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18126:175..457+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCTTCAAACGGCGGAGCACGTGATCGCCATGGCACGGAGGAAGGCTG
GGGAATACTTCCCCATTACGTCCAAAATGCTCCATACCATCGTCAAGGGC
GGTGTTGTTCCGGCCGACTTCGATTGTATTTACCCCTTCAAGGGAGCTAA
AGACTTCGACATCACTGCCGAGTTCGCCAACTACCAGCACCAGTACATAC
TCGATGATACCGGGGGTGGGGTCTCGACTGGCACCACACACAGGCGCGTT
GCCTTGGAAACCTCCGGCAGCAAACAGGGCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18126:175..457+

>mRNA_Ecto-sp13_S_contig18126.5586.1 ID=mRNA_Ecto-sp13_S_contig18126.5586.1|Name=mRNA_Ecto-sp13_S_contig18126.5586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18126:175..457+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGGAGGAAGGCTGGGGAATACTTCCCCATTACGTCCAAAATGCT
CCATACCATCGTCAAGGGCGGTGTTGTTCCGGCCGACTTCGATTGTATTT
ACCCCTTCAAGGGAGCTAAAGACTTCGACATCACTGCCGAGTTCGCCAAC
TACCAGCACCAGTACATACTCGATGATACCGGGGGTGGGGTCTCGACTGG
CACCACACACAGGCGCGTTGCCTTGGAAACCTCCGGCAGCAAACAGGGCA
AG
back to top