mRNA_Ecto-sp13_S_contig18121.5584.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18121.5584.1
Unique NamemRNA_Ecto-sp13_S_contig18121.5584.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18121.5584.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.040e-55
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 1 
Query:  340 MAWKEEDERILFGGRTRYSVIVVELEHHTSNLAREKERVRAFEDSTNTAVVSVQFTNPYPHAPITQGSDAPFFVSHPEGDEKAPVDKKVRVVHLKDIGTHVKPYQQS 660
            MAWKEEDERILFG +TRYSVIVVE+EHHTSNLAREKERVRAFEDSTNTAVVSVQF NP PHAPIT+GS APFFVSHPEGDE+A VDKKVRVVHLKDIGTHVKPYQ S
Sbjct:    1 MAWKEEDERILFGSKTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAVDKKVRVVHLKDIGTHVKPYQAS 107
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BLAST of mRNA_Ecto-sp13_S_contig18121.5584.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 7.320e-23
Identity = 82/173 (47.40%), Postives = 99/173 (57.23%), Query Frame = 1 
Query:  172 WSVFVLWIISL--HWNNAAATSEDPAAAVAAERTPQNVHS-------DRGLRRIDLLELRREHAAMAWKEEDERILFGGRTRYSVIVVELEHHTSNLAREKERVRAFEDSTNTAVVSVQFTNPYPHAPITQGSDAPFFVSHP-EGDEKAPVDKKVRVVHLKDIGTHVKPYQQS 660
            WS  VL I S   HW    A S D   A     + +  +S       DRGL  +D  +L+ EH AMAWKEED  IL+ G+T YSVI+VE  HHTSNL R+KERVRAFED  NT VVS+QF +    A     S  PFFV HP EG     VDK+VR+V+LK+    +   Q S
Sbjct:    8 WSAVVLAITSSSRHW---VAVSCDDDLAPGRRLSSRTRYSRSELRKTDRGL--VDGHKLQLEHNAMAWKEEDPAILYSGKTTYSVIIVERLHHTSNLIRDKERVRAFEDG-NTTVVSMQFADTLLRA--YDDSAPPFFVGHPAEG-----VDKRVRLVYLKEFWNKINDNQAS 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18121.5584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G272_ECTSI2.040e-5590.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G273_ECTSI7.320e-2347.40Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18121contigEcto-sp13_S_contig18121:761..2575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1177
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionExostosin-like
Ec32 orthologEc-16_002250.1
Cds size531
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.7022612-UTR-Ecto-sp13_S_contig18121:760..12501681462935.7022612-UTR-Ecto-sp13_S_contig18121:760..1250Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18121 761..1250 -
1681462935.7361164-UTR-Ecto-sp13_S_contig18121:2419..25751681462935.7361164-UTR-Ecto-sp13_S_contig18121:2419..2575Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18121 2420..2575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.7148054-CDS-Ecto-sp13_S_contig18121:1250..12831681462935.7148054-CDS-Ecto-sp13_S_contig18121:1250..1283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18121 1251..1283 -
1681462935.7272456-CDS-Ecto-sp13_S_contig18121:1921..24191681462935.7272456-CDS-Ecto-sp13_S_contig18121:1921..2419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18121 1922..2419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18121.5584.1prot_Ecto-sp13_S_contig18121.5584.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18121 1251..2419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18121.5584.1

>prot_Ecto-sp13_S_contig18121.5584.1 ID=prot_Ecto-sp13_S_contig18121.5584.1|Name=mRNA_Ecto-sp13_S_contig18121.5584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MRARLWSVFVLWIISLHWNNAAATSEDPAAAVAAERTPQNVHSDRGLRRI
DLLELRREHAAMAWKEEDERILFGGRTRYSVIVVELEHHTSNLAREKERV
RAFEDSTNTAVVSVQFTNPYPHAPITQGSDAPFFVSHPEGDEKAPVDKKV
RVVHLKDIGTHVKPYQQSGYTEFAPA*
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mRNA from alignment at Ecto-sp13_S_contig18121:761..2575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18121.5584.1 ID=mRNA_Ecto-sp13_S_contig18121.5584.1|Name=mRNA_Ecto-sp13_S_contig18121.5584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18121:761..2575- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTATCGGCTTCAGAATCGAGCCGGTGAGGCTGGGACGTTTCGACACA
CCAACAGGCCATTCCTCTTTGGGCAACACCACCTCATGTCGTGTACCTGT
AGCTGAAAACCAGTCAGCGGAGCTTGTTCTTGGTTCGACAACAGGCAGCG
GCGATTATGCGGGCGCGATTGTGGTCCGTTTTCGTTCTTTGGATCATCTC
TCTCCACTGGAATAACGCTGCGGCGACTTCGGAGGACCCTGCTGCTGCTG
TCGCTGCTGAACGGACACCCCAGAATGTCCATTCCGATCGGGGCTTGAGA
CGCATTGATCTGCTCGAGCTGCGGCGGGAGCACGCGGCGATGGCGTGGAA
GGAGGAGGACGAACGCATCCTCTTCGGCGGCAGGACCAGGTACTCCGTGA
TCGTGGTCGAGCTGGAGCATCACACGTCGAACCTGGCCCGAGAGAAGGAG
AGAGTACGAGCCTTCGAGGACAGCACCAACACCGCCGTGGTGTCGGTGCA
GTTTACAAATCCCTACCCGCACGCACCGATAACCCAGGGCTCGGACGCTC
CTTTCTTCGTGAGTCATCCGGAGGGAGACGAAAAAGCGCCAGTGGACAAG
AAAGTTCGGGTAGTGCATCTGAAGGACATCGGGACGCACGTCAAACCCTA
TCAGGTGAGTAGTCAGGGAAGGCAATTTGTCCATGCTGCTGACCGAGACA
CCTCACTGCATGTTGCCACGACAAGAAACTCTTTTTAGCCTATTTACTGT
TACGCTGCTGCTGTGGCCTAACTTATGTACAATCTACACGCGTTTTGTCG
TCTAGCGAACGCGCCCCGTTGCCCATCGATTTACGGTACCGTCCCCAAAC
AGCGTGCGTACCATGCGTAATAACTGTTTCCATCCCCCAACTATTTACTG
TCTGTGTTGTATTCATGTTTGCACTTGTGTTGAGTCATGTCTTGGGTCCT
CCTCACCGTTTTCTATGATAGCATGCTTTTCTTTGGCAGATGCAAACAAC
AGATTCGACAGACGCGGGAGTAAAACCGAGTTCTGGGTGTATTCCGCATT
GCGCACACACACGCGGTGTGTGAGATTATTGCCAGCAACAGGGAGTCTCT
CCGATACAATTTCTTACCTACGCTTCCCACCAACAGCACGACCCGTCCTC
GAAGGATTTGTACGATTAGTTCGCCCGATCAGCGATGCCGAAGGCGGCAC
ACCTCGGGCTTGTGGGCAATTTGATTCAAAATGTTAGGCATTGTCTGACA
TAAAAATTACATGCCTGTGATGATGTTTGAAATGCTTTGCAGCAAAGCGG
GTACACCGAGTTCGCTCCCGCATAAAGAGCAAGTTTTGGCCTGCCGAGGC
TGGGGTGCTTGGTTCCGAGGGACACGCGACAGAAGTGTACGAACTGCCGT
ACTTCAAGCAGGTTGTGTTTTGGGGGGCCTCAAAAGTGGTGCTCAAGTGT
TTAGCTTTTGAAATTTTCGAGGCTACGTAATTTTTTTTTCATCATTTGCC
GAAGCTCTTTCAGTGCGGGCGCCGCTAGCTGTCCGTGATTGCACCGGGAA
ATTTTCAAGTCCATATCTGTTAGTAATTGCCTACTTTCGTTTTTGTTGAG
CTAGTGGAGCGTTTTCGAGGGAAACTCCGATCTGCATTGCCTTTGTTCCG
TTGTCTCCCTCTCTCTCTTTGTTTTCCATGCTTCTTTTTCTCTCTTTCGT
TGTAATTTATTCCTTCGTCCCTTTTCGCCGGGGGTCGATCGATCGCCTGC
ACCCCGATCAGGAACCTTTTCCTTGTTAGCTGTTTCCTTTTTCTTATTTT
TTGTTTGGGTAAAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18121:761..2575-

>mRNA_Ecto-sp13_S_contig18121.5584.1 ID=mRNA_Ecto-sp13_S_contig18121.5584.1|Name=mRNA_Ecto-sp13_S_contig18121.5584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18121:761..2575- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGCGCGATTGTGGTCCGTTTTCGTTCTTTGGATCATCTCTCTCCA
CTGGAATAACGCTGCGGCGACTTCGGAGGACCCTGCTGCTGCTGTCGCTG
CTGAACGGACACCCCAGAATGTCCATTCCGATCGGGGCTTGAGACGCATT
GATCTGCTCGAGCTGCGGCGGGAGCACGCGGCGATGGCGTGGAAGGAGGA
GGACGAACGCATCCTCTTCGGCGGCAGGACCAGGTACTCCGTGATCGTGG
TCGAGCTGGAGCATCACACGTCGAACCTGGCCCGAGAGAAGGAGAGAGTA
CGAGCCTTCGAGGACAGCACCAACACCGCCGTGGTGTCGGTGCAGTTTAC
AAATCCCTACCCGCACGCACCGATAACCCAGGGCTCGGACGCTCCTTTCT
TCGTGAGTCATCCGGAGGGAGACGAAAAAGCGCCAGTGGACAAGAAAGTT
CGGGTAGTGCATCTGAAGGACATCGGGACGCACGTCAAACCCTATCAGCA
AAGCGGGTACACCGAGTTCGCTCCCGCATAA
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