mRNA_Ecto-sp13_S_contig18112.5579.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18112.5579.1
Unique NamemRNA_Ecto-sp13_S_contig18112.5579.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: A0A6H5KL54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL54_9PHAE)

HSP 1 Score: 534 bits (1375), Expect = 7.930e-190
Identity = 249/259 (96.14%), Postives = 253/259 (97.68%), Query Frame = 1
Query:    1 AFELQEKNALRQKVSVWFGDDDACELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVEHPSVPLVWDGGRPVR 777
            AFELQE NALRQKVSVWFGDDDA ELETAPQLRARLKRL PEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLG QR+RLYQDSTFCKRPGDG TRWHSDLNMAPLDCNDFVTAWIPLEE+PAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRET RVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVV+HPSVPLVW+GGRPVR
Sbjct:  139 AFELQEMNALRQKVSVWFGDDDASELETAPQLRARLKRLTPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGCQRLRLYQDSTFCKRPGDGQTRWHSDLNMAPLDCNDFVTAWIPLEEIPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRETRRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVKHPSVPLVWNGGRPVR 397          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: D7FZY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY1_ECTSI)

HSP 1 Score: 444 bits (1142), Expect = 2.670e-157
Identity = 203/208 (97.60%), Postives = 206/208 (99.04%), Query Frame = 1
Query:  154 MFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVEHPSVPLVWDGGRPVR 777
            MFRKDGPFRETIERVVLSPRLAH+AAQLLG QRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDL+GRYREKDHAPLAAGDITWHHGWTLHSS GNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVV+HPSVPLVWDGGRPVR
Sbjct:    1 MFRKDGPFRETIERVVLSPRLAHVAAQLLGCQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLSGRYREKDHAPLAAGDITWHHGWTLHSSLGNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVKHPSVPLVWDGGRPVR 208          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: A0A835YLJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ4_9STRA)

HSP 1 Score: 253 bits (645), Expect = 2.180e-79
Identity = 131/283 (46.29%), Postives = 162/283 (57.24%), Query Frame = 1
Query:    4 FELQEKNALRQKVSVWFGDDDACELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHS----------------------DLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDK---------WSYGDWVGDLPVGGVVEHPSVPLVWD 759
            F   E +AL+QKV+V  G+  A    +A  L   L++L P+E+PFLQVFNM+R  G     +  +V S RLA  AA LLG Q VR+YQDSTF KR GDGPT WHS                      DLNMAP D ND VTAW+PL  + A  +GGS LVFASRSHRDFALN+W+D   +EDL+ RY E     +  GD +WHHGW LHS+ GN     RVA  VSY  DG  +L + A   P+ E           WSY DW+ D   G   +HP +P+ +D
Sbjct:   79 FRALELSALQQKVTVLLGEGAAPPGASAEDLLVLLRQLPPDEIPFLQVFNMWRTPGAHAAAVSALVRSRRLARHAAALLGCQAVRVYQDSTFVKRSGDGPTNWHSGINAQLWAAAAAPLRRHERNRGDLNMAPFDTNDMVTAWLPLTHIAACEDGGSGLVFASRSHRDFALNYWQDPHAQEDLSERYDETPQLAMEPGDCSWHHGWVLHSANGNDTPETRVAFTVSYIADGARMLGEGAEHYPEQEXXXXXXXXXXTWSYSDWIADTCPGEPADHPFLPVAFD 361          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: A0A7S2SR24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR24_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.380e-71
Identity = 132/266 (49.62%), Postives = 156/266 (58.65%), Query Frame = 1
Query:    1 AFELQEKNALRQKVSVWFGDDDACE------LETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHW-RDSRLREDLTGRYRE--KDHAPLAAGDITWHHGWTLHSSPGNRRETPRVALAVSYFRDGTCLLSDTAGRSP-DPEDKWSYGDWVGDLPVGGVVEHPSVPLVWDGGR 768
            AF  +E  A      V  GD++  +      LET  +    L+    E +PFLQVFN +R+D    E     V  PRLA +AAQLLG  RVRLYQDS F KRPGDG TRWHSDL+MAP D ND VT WIPL+ VPA+ +GG+ L FAS SHRDFAL  W R     +D + RY +    H  L  GD TWHHGW LHSSP N     R+AL VS+  DG  L  +       D ED+ SY DWV ++P G  VEH  VPLV  GGR
Sbjct:  117 AFRRREFEAWFHSARVMLGDENLVDDFGLPLLETTEECIEALEAHGCE-LPFLQVFNSWREDPAVAE----FVCGPRLAAVAAQLLGVSRVRLYQDSMFLKRPGDGATRWHSDLHMAPFDTNDLVTCWIPLDPVPAQEDGGTGLTFASGSHRDFALAFWSRPHETGKDFSARYDDCLASHGALDPGDATWHHGWVLHSSPPNDSPDRRLALTVSFVADGARLRDEAHHEVDIDDEDRTSYEDWVSEVPPGAPVEHAMVPLV-GGGR 376          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: A0A7S1NK13_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NK13_9EUGL)

HSP 1 Score: 226 bits (576), Expect = 5.180e-71
Identity = 113/212 (53.30%), Postives = 133/212 (62.74%), Query Frame = 1
Query:  124 EEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRETPRVALAVSYFRDGTCLLSDTAG-RSPDPEDKWSYGDWVGDLPVGGVVEHPSVPLVW 756
            E VPF+Q+FN++++    R    R  LS RL  IAAQ+LG   VRLYQDS F KRPGDGPT WHSDLNMAP D NDFVT WIPL+ +P   EGGS L FASRSHRD AL  W D R   DL+ RY  + +     GD + HHGW LHS+PGN     R A  VSY  D    L D    R PD ED+ SY  W  D+  GG+ +HP +PLV+
Sbjct:   10 EPVPFMQLFNVWKESPEAR----RFALSRRLGSIAAQVLGVPAVRLYQDSVFAKRPGDGPTEWHSDLNMAPFDTNDFVTFWIPLQPIPYSDEGGSSLCFASRSHRDVALPFWSDPRT-TDLSDRYEVETYGEFKVGDCSLHHGWCLHSAPGNELPDTRYAYTVSYVADCAPTLQDEGHVRRPDMEDRRSYRSWFADVGWGGIADHPELPLVY 216          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: R1DNY2_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNY2_EMIHU)

HSP 1 Score: 228 bits (582), Expect = 3.230e-70
Identity = 132/256 (51.56%), Postives = 155/256 (60.55%), Query Frame = 1
Query:   13 QEKNALRQKVSVWFGDDDACELE----TAPQ-LRARLKRLAPE-EVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWR-DSRLREDLTGR-YREKDHAPLAAGDITWHHGWTLHSSPGNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVEHPSVPLVW 756
            +E  ALRQKV V  GDD     E     +P  LR  L+   PE  VPF+Q+FN++R   P    + R   SP LA  AA LLG +RVRLYQDS F KRPGDGPT WHSDL+MAPLD N FVT W+PL +V A  +GGS LVFAS SHRD ALN W  D R   D + R Y  +D   L AGD TWHHGW LHS+  N  + PR A+AVS++ DG   L   A RS   ED  S   W+GD+  G    H  +PLVW
Sbjct:   35 RESEALRQKVRVLLGDDRLARAEHKSAASPHVLRRILREELPEGAVPFMQLFNLWRT-SPMVHELWR---SPALAGTAASLLGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWHGDPRRPVDASTRGYPLRDGGALRAGDATWHHGWVLHSAAPNMGDVPRRAVAVSFYADGASRLQG-ALRSQHDEDAESCVAWLGDVRPGRAARHRWLPLVW 285          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: A0A7S0QAH8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QAH8_9EUKA)

HSP 1 Score: 220 bits (560), Expect = 2.380e-67
Identity = 128/259 (49.42%), Postives = 156/259 (60.23%), Query Frame = 1
Query:   22 NALRQKVSVWFGDDDACELE---TAPQ------LRARLKRLAPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQR---VRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWR-DSRLREDLTGR-YREKDHAPLAAGDITWHHGWTLHSSPGNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVEHPSVPLVW 756
            +A  QKV V  GDD   EL    TA +      LR  L RL    +PFLQVFN++R D      +  ++ S  +A  AAQLLG +R   +RLYQDS F KR GDGPT WHSDL MAPLD N FVTAWIPL+ VP   +GGS LVFA  SHRD AL  W  D R+ EDL+GR Y E +   +A GD+T+HHGWTLH +P N   TPR AL  SYF DG   L  +A ++   ED  S+ +W   +P G    H  +P+VW
Sbjct:   10 DAYEQKVRVLLGDDVLQELHRHSTASRKRRLHLLREALDRLPGGSIPFLQVFNLWRTDV----AVLNLLRSAAVAGSAAQLLGAKRGDRLRLYQDSLFVKRVGDGPTHWHSDLAMAPLDTNAFVTAWIPLQPVPPPNKGGSALVFAGGSHRDVALPFWHGDPRVCEDLSGRGYTEHEPEAMAVGDVTFHHGWTLHFAPPNTGPTPRRALTASYFLDGALRLGGSARQND--EDIESHTEWSRHVPPGKPARHALLPVVW 262          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: A0A7S2GNK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNK7_9STRA)

HSP 1 Score: 216 bits (551), Expect = 9.120e-66
Identity = 128/264 (48.48%), Postives = 152/264 (57.58%), Query Frame = 1
Query:    1 AFELQEKNALRQKVSVW-------FGDDDACELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLR-EDLTGRYREK--DHAPLAAGDITWHHGWTLHSSPGNRRETPRVALAVSYFRDGTCLLSDTA---GRSPDPEDKWSYGDWVGDLPVGGVVEHPSVPLV 753
            AF L E +A RQ   V        FG       E A   RA L+     E+PFLQ  N++R D P  E I R     +    AAQLLG + VRLYQDS F KR  DGPTRWHSDL+M+PLD N  VT W+ L+ VP++ +GGS L FAS SHRDFAL    D R    DLT RY E   DH  L  GD TWHHGWTLHSSP N  ++PR+A  VS+  DG  +L   A   G + D ED+ SY DW+ DL  G   EH  +P+V
Sbjct:   74 AFLLLEPDAWRQSARVMLEGVEDDFGLPLVKNFEDAADCRAVLEE-HDVELPFLQAMNLWRND-PKVEAIVR-----KFGKTAAQLLGVESVRLYQDSVFYKRVDDGPTRWHSDLHMSPLDTNSMVTMWLALDHVPSQEDGGSALTFASGSHRDFALAFHYDPRDETNDLTERYAEALCDHGELRPGDATWHHGWTLHSSPPNELDSPRLAFTVSFIADGARILGAEALKSGETIDDEDRASYEDWLCDLEPGARAEHRLLPVV 330          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: A4RQD5_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RQD5_OSTLU)

HSP 1 Score: 216 bits (549), Expect = 1.480e-64
Identity = 113/246 (45.93%), Postives = 141/246 (57.32%), Query Frame = 1
Query:   25 ALRQKVSVWFGDDDACELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRE-TPRVALAVSYFRDGTCLL-SDTAGRSPDPEDKWSYGDWVGDLPVGGVVEHPSVPLVW 756
            A R +VSV     DA EL      +  LK+ + E+V FLQ FN+ R+           ++S R A IAA+L+G +R R+YQ   F K PG   T WHSDLNM PLD NDFVT WIPL  +    E  + L FA+RSHRDF+L +WR     EDL GRY    +  L  GD+T HHGW LH SP    +  PR AL+V YF DG   L +D   R P  ED WSY  W+ D+  G V +HP +P+VW
Sbjct:  167 AYRHRVSVLCPQVDARELRDVEDAKRALKKHSQEDVGFLQTFNLHREQT---SAAREYIMSKRFAKIAAELMGCERARIYQSCIFVKEPGMAETNWHSDLNMVPLDTNDFVTLWIPLRSL---EEDDAALHFANRSHRDFSLPYWRTLEGMEDLEGRYEIDTYDELDLGDLTAHHGWCLHWSPPQPEDCVPRYALSVCYFADGARRLDTDQLRRVPHDEDAWSYDSWLKDIKPGAVAKHPELPIVW 406          
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Match: Q01H68_OSTTA (Phytanoyl-CoA dioxygenase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01H68_OSTTA)

HSP 1 Score: 213 bits (543), Expect = 8.290e-64
Identity = 114/247 (46.15%), Postives = 147/247 (59.51%), Query Frame = 1
Query:   25 ALRQKVSVWFGDDDACELETAPQLRARLKRLAPEEVPFLQVFNMFRKDG-PFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRET-PRVALAVSYFRDGTCLL-SDTAGRSPDPEDKWSYGDWVGDLPVGGVVEHPSVPLVW 756
            A R +VSV   D    EL+   + +  LK+ + E+V FLQ FN+ R +  P RE I    +S + A IAA+L+G +R R+YQ   F K PG   T WHSDLNM PLD NDFVT WIPL  +    E  + L FA+RSHRDFAL +WR      DL GRY    +  L  GD+T HHGW LH SP   +++ PR AL+V YF DG   L ++   R+P  ED+WSY  W+ DL  G V +H  +P+VW
Sbjct:  154 AYRHRVSVLCPDARTTELKDVEECKRALKKHSQEDVGFLQTFNLHRNESSPAREYI----MSKQFAKIAAELMGCERARIYQSCVFVKEPGMAETNWHSDLNMVPLDTNDFVTLWIPLRSLD---EDDAALHFANRSHRDFALPYWRTIEGMSDLEGRYEIDTYDELDLGDLTAHHGWALHWSPPQPKDSVPRYALSVCYFADGARRLETEELRRTPHAEDEWSYETWLRDLQPGAVAKHFELPIVW 393          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18112.5579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL54_9PHAE7.930e-19096.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY1_ECTSI2.670e-15797.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YLJ4_9STRA2.180e-7946.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SR24_9STRA1.380e-7149.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1NK13_9EUGL5.180e-7153.30Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
R1DNY2_EMIHU3.230e-7051.56Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A7S0QAH8_9EUKA2.380e-6749.42Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2GNK7_9STRA9.120e-6648.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A4RQD5_OSTLU1.480e-6445.93Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
Q01H68_OSTTA8.290e-6446.15Phytanoyl-CoA dioxygenase n=2 Tax=Ostreococcus tau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18112contigEcto-sp13_S_contig18112:83..3253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score445.7
Seed ortholog evalue1.5e-122
Seed eggNOG ortholog2880.D7FZY1
Model size781
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs29XGT@1,2RXRT@2759
Cds size780
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.3076546-CDS-Ecto-sp13_S_contig18112:82..2261681462935.3076546-CDS-Ecto-sp13_S_contig18112:82..226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18112 83..226 +
1681462935.3219652-CDS-Ecto-sp13_S_contig18112:556..6631681462935.3219652-CDS-Ecto-sp13_S_contig18112:556..663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18112 557..663 +
1681462935.3415883-CDS-Ecto-sp13_S_contig18112:1127..14051681462935.3415883-CDS-Ecto-sp13_S_contig18112:1127..1405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18112 1128..1405 +
1681462935.3523376-CDS-Ecto-sp13_S_contig18112:2541..26681681462935.3523376-CDS-Ecto-sp13_S_contig18112:2541..2668Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18112 2542..2668 +
1681462935.3643212-CDS-Ecto-sp13_S_contig18112:3129..32531681462935.3643212-CDS-Ecto-sp13_S_contig18112:3129..3253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18112 3130..3253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18112.5579.1prot_Ecto-sp13_S_contig18112.5579.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18112 83..3253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18112.5579.1

>prot_Ecto-sp13_S_contig18112.5579.1 ID=prot_Ecto-sp13_S_contig18112.5579.1|Name=mRNA_Ecto-sp13_S_contig18112.5579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
AFELQEKNALRQKVSVWFGDDDACELETAPQLRARLKRLAPEEVPFLQVF
NMFRKDGPFRETIERVVLSPRLAHIAAQLLGYQRVRLYQDSTFCKRPGDG
PTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFAL
NHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRETPRV
ALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVEHPSVPL
VWDGGRPVR*
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mRNA from alignment at Ecto-sp13_S_contig18112:83..3253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18112.5579.1 ID=mRNA_Ecto-sp13_S_contig18112.5579.1|Name=mRNA_Ecto-sp13_S_contig18112.5579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18112:83..3253+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCGAGCTCCAAGAGAAGAACGCGCTGCGCCAGAAGGTTTCCGTCTG GTTCGGCGACGACGACGCTTGCGAGCTCGAAACCGCCCCACAGCTCCGCG CGAGGCTGAAGCGACTTGCCCCTGAAGAGGTCCCCTTTCTCCAGGTGGCG CCACGGACTAGGACGAGAAACGCACCCTTCAGGCTGCTGCCTCTCCTCAT CTCTGACGTGTTGATTTTCGATGTGTTTTCGTGTGCGTGTCTCATCACTG CCTCGCAGCACGTATATCTGCGCCCCCCCCCGGCGAACAAGGAGACTCGA GAAGACGTCACCTAAACTATTGCGACTACTTTCATGAGATAAGCAAGTTA ATACGTTGCAGCTTGACTGCGGTCGAAGTGAACTTTGGTGCTGTAGGCTT GCAAGCGTCTTGCCAGTGTCGGTAGTGCTTACTAGTTTTTCCTCCGACGC GCAAAAACACTTCCGCCGCTTCAGGTTTTCAACATGTTCAGGAAGGACGG TCCGTTCCGAGAAACCATCGAGCGGGTCGTTCTATCCCCGAGGCTTGCCC ACATCGCCGCGCAGCTCCTGGGCTACCAACGGTGAGCGAGCGTCGAAAAA AAATGCTAATTTAAGCGATGAGAATTGTTGAGTGTTCTCATTCGCTGCAC CCGAGCCATTTCCTGAAGCGTCTATCGTGCGCGGGGGGGGCGCTGTCACC TCTGGCGGTCTTGACATACAGCGTCCGGATGGTGGTCGGTAGAAGAACAG CCTCGCCGTCGCGCTCTCGATTAGGTGGAATCTATACCGTTTTCTTTCTC GCAAGGATCTGGATGCGCAAAGGTTGGGGGGATGTATCCGTTCTGCACGC CCCATGCTTCAACTCTCAAGAGACGACCTACAGCACTACTCTCAAGATAT GGGAGGGAAGCCTCAGTTTGTGTGGCTGTCTCTCAGGTTGTTGTCTTCGC CTTCCTGCTGTTGTTGCTGCTGCTACCGCTGCTGCCGCTGGTGCTGATGG TGATGGGGATGCTGCCGCTACGCGACCTTCTACGGTCGTGGTCAGCGTGC GACTCTACCAAGACTCCACGTTCTGCAAGCGGCCGGGCGACGGTCCAACC AGGTGGCACTCGGACCTCAACATGGCACCGCTCGACTGCAACGACTTCGT GACCGCGTGGATACCGTTGGAGGAGGTTCCCGCGAAGAGGGAGGGCGGCT CACCCCTGGTGTTCGCTAGCAGGTCGCACCGCGACTTCGCCCTCAACCAC TGGCGGGATTCCCGGCTAAGGGAAGACCTGACCGGGCGATACCGCGAGAA GGATCACGCTCCCTTGGCCGCCGGTAATATTGAGGCTTGATTCGGAAAGA TAAATACAAACACAGAAATACTACCCATTCGAGATGAGACCACAGTCGAA CGGGATGTGTTAAGAAGTCTGTACGGTGAATGGAGGGAAACCGGCTGGGT GCTGGGCTTATTTGAAGTCTTTTAAGCGTATACATTTGAAAAGTTTCCAT CAGTGATGCCAGCAGGTTCTTGTTTTTTGTTCCTTGAGGTTCGTTGGGCT GTTCGAGTCAAGAAAGGCGTTGACTGTGTGAGCTTGAAAAATGTCACACC GCAGCTGGCAGCTGGCTGCGGATTGGTCCTGCCTGCGTGCTTTACTTTCA TCTTGCGTCACACCCCTTGATGGCACTGGGCTCTCATGAGCCCGCTCTAG AGGGATTCCTTTACGCGCGCTAACGCTTCCAGCGATGCTTGATGACCACG CTTTGCGGTTCCCCGAACGCGCATTTTGACGAGACAGGAAGGGGATAGTG TTGCGGTTTCGACTTTTCGGCATGCCCTCTAGTGGGTCTAGGGAAAGCCC TGTGACCCGGGACACGATGATGGTTCTCGTGGCACATAAATAGCTAGAAG GGGCGAGATCAGAAACAAGTGATTTTTGTGCCTTGTGCCTATCAAAGCTT GCACCTACCCCGTGAAAAAGTCGCGTGGCAATTTCCCGTCAAGGGTTGCT AGTTTTTCCCACGGCCCTCTTGACCTTGATGGCTTCGTTTTTTGAGGGAG TCTTGGCAGCAACTTCTTACCTAGCTTACTTTTCTACCGTATGCAGAACT TGCCTGTGGTACCCAACGAGTCCGAACGGCATGCATGTCCCATCCCTCCA TAGTATGCCTCCAGTAACCTGGAATACCACCAAAACGTGCAGCTCGATTT CTCCACAAGCAAGAGGCTGTCAAGTGCTGAAACGGGTGGTGTTCCAAATA TCAGCTCGCCAAGAGAGAGGCTTTTCTGTCCTTGCACGTCCCGGTAGACG TTCCTATCGCACCCCCGATTAATTGTGGAGCAACTGACCTTGCAAGAATC GATCGCACTCCGGTGCGTTCGCTTTTACGCCCGCGGTATGACCTCGGAAC GACATCCTACCAGGAAACTTTTAGCTCAAGGCGTGGTGTACGCGCTCTGG TGTGTGTAGGTGACATCACGTGGCACCACGGGTGGACGCTTCACAGCTCC CCGGGCAACAGGAGGGAGACGCCTCGGGTGGCCTTAGCCGTCAGCTACTT CCGGGACGGGACTTGCCTCCTGTCTGACACCGCCGGGTATGTTCTTCATT TGTTTTCTTCCACTTTGTTTTTTTTGTTTCTTTTTCATTTCATTCATGAC TGCCCGCAATTTTGCGACCGATGGTTTCCTGGAAACCCAGGTTTTTGCCT ATTGTCGTGCTTGCTGTCGATCGTGATGGAAATCTTTGGAGGACCACTAT TTTAAGTTTCGTCAGAAAGAATGTTTTTGGTCAAACCTTTTTCGTATCAA GATTCTCGCCAAGGACGATTTTCTTTCTTGAAGTTCCACGGCAAACTCAT GAAACGACGTCGACTCTTCGCTCTCGAGCCTTGCACATATTCTGGCTTCG CCCTTTAACAAGGTGCTTGCTCCTCCGGGTTGAGGCCAAAACTACTCGCT TTCCTCCTCGCGCCTTTGGCAAGGTGCTCGCTCCACCTGGTTAAGGCTAA GATTAGCCGCTGTCCTCCACGCGTGCGCGAAACTCGTCAATTTACAGGAG ATCACCAGATCCAGAGGACAAGTGGAGCTACGGGGATTGGGTCGGCGACT TGCCAGTAGGAGGCGTCGTTGAACACCCCTCCGTCCCGCTTGTATGGGAC GGGGGACGGCCCGTGAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18112:83..3253+

>mRNA_Ecto-sp13_S_contig18112.5579.1 ID=mRNA_Ecto-sp13_S_contig18112.5579.1|Name=mRNA_Ecto-sp13_S_contig18112.5579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18112:83..3253+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCGAGCTCCAAGAGAAGAACGCGCTGCGCCAGAAGGTTTCCGTCTG
GTTCGGCGACGACGACGCTTGCGAGCTCGAAACCGCCCCACAGCTCCGCG
CGAGGCTGAAGCGACTTGCCCCTGAAGAGGTCCCCTTTCTCCAGGTTTTC
AACATGTTCAGGAAGGACGGTCCGTTCCGAGAAACCATCGAGCGGGTCGT
TCTATCCCCGAGGCTTGCCCACATCGCCGCGCAGCTCCTGGGCTACCAAC
GCGTGCGACTCTACCAAGACTCCACGTTCTGCAAGCGGCCGGGCGACGGT
CCAACCAGGTGGCACTCGGACCTCAACATGGCACCGCTCGACTGCAACGA
CTTCGTGACCGCGTGGATACCGTTGGAGGAGGTTCCCGCGAAGAGGGAGG
GCGGCTCACCCCTGGTGTTCGCTAGCAGGTCGCACCGCGACTTCGCCCTC
AACCACTGGCGGGATTCCCGGCTAAGGGAAGACCTGACCGGGCGATACCG
CGAGAAGGATCACGCTCCCTTGGCCGCCGGTGACATCACGTGGCACCACG
GGTGGACGCTTCACAGCTCCCCGGGCAACAGGAGGGAGACGCCTCGGGTG
GCCTTAGCCGTCAGCTACTTCCGGGACGGGACTTGCCTCCTGTCTGACAC
CGCCGGGAGATCACCAGATCCAGAGGACAAGTGGAGCTACGGGGATTGGG
TCGGCGACTTGCCAGTAGGAGGCGTCGTTGAACACCCCTCCGTCCCGCTT
GTATGGGACGGGGGACGGCCCGTGAGATGA
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