mRNA_Ecto-sp13_S_contig1811.5577.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1811.5577.1
Unique NamemRNA_Ecto-sp13_S_contig1811.5577.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1811.5577.1 vs. uniprot
Match: A0A6H5K7C9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7C9_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.670e-43
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 2 
Query:  206 MGCMRRDMVTRTTWIVLGVQLLAGLCEGSAFASGASGTPAHAGGSNAQGNGGRAGAGAAMSAKTSSLLSSAKSGVTDFFATASSASDG 469
            MGC+RR MVTRTTWIVLGVQLLAGLCEGSAFAS A+GTP HAGGSNAQGNGGRAGAGAAMSAKTSSLLSSAKSGV DFFATASSASDG
Sbjct:    1 MGCIRRAMVTRTTWIVLGVQLLAGLCEGSAFASSAAGTPTHAGGSNAQGNGGRAGAGAAMSAKTSSLLSSAKSGVRDFFATASSASDG 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1811.5577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7C9_9PHAE9.670e-4393.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1811contigEcto-sp13_S_contig1811:7564..9733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size504
Hectar predicted targeting categorysignal peptide
Exons3
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.1788714-UTR-Ecto-sp13_S_contig1811:7563..75991681462935.1788714-UTR-Ecto-sp13_S_contig1811:7563..7599Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1811 7564..7599 -
1681462935.187716-UTR-Ecto-sp13_S_contig1811:8328..83341681462935.187716-UTR-Ecto-sp13_S_contig1811:8328..8334Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1811 8329..8334 -
1681462935.2120247-UTR-Ecto-sp13_S_contig1811:9655..97331681462935.2120247-UTR-Ecto-sp13_S_contig1811:9655..9733Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1811 9656..9733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.1958807-CDS-Ecto-sp13_S_contig1811:8334..85211681462935.1958807-CDS-Ecto-sp13_S_contig1811:8334..8521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1811 8335..8521 -
1681462935.2039523-CDS-Ecto-sp13_S_contig1811:9458..96551681462935.2039523-CDS-Ecto-sp13_S_contig1811:9458..9655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1811 9459..9655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1811.5577.1prot_Ecto-sp13_S_contig1811.5577.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1811 8335..9655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1811.5577.1

>prot_Ecto-sp13_S_contig1811.5577.1 ID=prot_Ecto-sp13_S_contig1811.5577.1|Name=mRNA_Ecto-sp13_S_contig1811.5577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MLGTPCNLRGALLPALLALARQAHIERPGRRAPVQSGTRELSDGLHAEGY
GDTNDMDRAGRTATCGTVRGLSVRVRCLRHAGARGGEQRPRKRREGRGRG
GDVCKDLFAAIVREERRDRLLRHGLFR*
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mRNA from alignment at Ecto-sp13_S_contig1811:7564..9733-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1811.5577.1 ID=mRNA_Ecto-sp13_S_contig1811.5577.1|Name=mRNA_Ecto-sp13_S_contig1811.5577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1811:7564..9733- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGGGGACTGTCGGGTTGATCGTTTCTTCGATCATGATCGAATGCTGA
CTCTCCCCGGTTCAAGAAGGCCTTCTGAATGCTTGGAACCCCCTGTAATC
TCAGAGGAGCGCTGCTTCCTGCCTTGCTAGCGCTAGCGAGGCAGGCACAC
ATAGAGAGACCGGGGCGCCGTGCCCCCGTTCAGAGCGGAACAAGGGAGCT
TTCCGATGGGTTGCATGCGGAGGGATATGGTGACACGAACGACATGGATC
GTGCTGGGCGTACAGCTACTTGCGGGTGAGTGCAACCAGCCGCTTTGGAA
GAGTCGATGGGTGTGCGTCAAGTATTACCACACCAACAGCCGGTGGTACG
TACTTTCATGTTGTTGGTGTGCTTGCGGTGTGGTACGACAGCAGGCCAGT
GTGCCTGGACAGTAGCGGCAGGCGTTGCTAGGTGCATCGTGCAGTCCCTG
CGACCCAGGAAACAGCGGGGATCATCGGTGACAAGCGAGGAGAGTTTTGA
AATTGTCGCAGCAGGGAATAACACCTCCCTGTCGTGTGCTGTACTGCACA
TTGCACCCACCCTGCCTACTTCAACAGCTGCCCCACTTGGCGCCCTGTGG
ATGATGGGATCTCAGCCGGCAGGAGATCATGCTAGCATGTCGCGATCGCG
ACTGCGTTCGTTATGCAGTCCTTAGAAAGGGGCTATGCGGAATAAACGCG
TCCCAAATTGAAAGTTGCATTGCTGCATGCGGGGTCTACGATCTTTTTTC
CCAGATTTCAGGTTGTAGATTCTTCACACGCATTTATTTGCAGGCACACG
GGTCAACGTTACTTGTACATGGCGCTGCTACGCTACCAAACGGTAGAGGG
CGCACTTTGTTCCATGAAGCATTCCTGATGTTTCTCGTCTCTTAAGGTGC
CGCCATCATCGATGGTGTGGCAGCAGCCTACGATCCCAGCTGCTCTCCTG
TGATTCACCGACATCCTCCACAAATTTCCATGTCCTCGACGTTTTTTGAC
AAGCAACACAAGCCCCTTACAGCAGCAGTTTCTGTTGACGGAAGTCCTGC
TTGGTTCTGCAGAAGAAACGCGCTCAAGAGATGTGCGGTACTGCCAGCGG
TACCATCATACCTGCGAAACACAGAACACCCTTCGAAACATTACACCAAG
AAAGGCGTCGCCCCCCTTTGTTCATTCGCCCAAAAATATGATCTTCTCTT
CCCCTCCAAAAGGACTGTGCGAGGGCTCAGCGTTCGCGTCAGGTGCCTCC
GGCACGCCGGCGCACGCGGGGGGGAGCAACGCCCAAGGAAACGGCGGGAG
GGCAGGGGCAGGGGCGGCGATGTCTGCAAAGACCTCTTCGCTGCTATCGT
CCGCGAAGAGCGGCGTGACAGACTTCTTCGCCACGGCCTCTTCCGCTAGC
GACGGGTGAGAGAGAGCCGCGCGTACGGGGGACCGGGAGAGCGGCGTAAA
CAACGGCCTTCTGCTTCTGAGAAGGCTGGGCATGTTGTTATCGTTTTTTA
TCGGAGGGGGGGGAGATCGTGCGGACACACGACGGGACATATCCGCCTCT
CTCCTGTTCTGCTTGGATGCGTTCAACCGGACACGGCGCGCTGGAGTCGA
AAGACAACAGTTCAGCAGTAGCGTCGGACTCGAATTGGATGATGCCGGTG
TCGTTAGGCGAATATGTTGGTGCTTCTCTCGTCGGCTAGGTTTGGATTAG
CAGCTAGCTGGGTGGTGATGACTGTTGTCGTCTGTCAGCCGTTTGTCACA
AATGCAGGACCGCCTACCTAGGATTTGAAGAGTATCTGGAGAAAGAATAG
GGAGGGGGGACGCGGACCTTATCCCTAAGCCTAACCCTAACCCCAAAACA
TGGATTGAATACTTTATCCCATATGTTGTTGACGACTCCGTGCTCCGTCA
TTTTCTTTGATCTTTTTGTGTCCAGCCCCGGGTTCGGGGGGTGACGGAGA
AGGGGAGGGGGGGGAGTTGTCGTCGTGCATGGCCAACCTTGGTTGGCGCC
CTCGCATTCTGCACTCGAAAAATTGGATTGCAATCCCACTCTGGTATGGC
GCTTGTTTCTACACTACCGGCTAAGAGCTTCTGCTGCTGCTGTTGCTTCT
TTGCGATGTCTCCAACAACCCTTGCGTGCATCAGCAAAACACGCCGTCGG
TACCGAGGAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1811:7564..9733-

>mRNA_Ecto-sp13_S_contig1811.5577.1 ID=mRNA_Ecto-sp13_S_contig1811.5577.1|Name=mRNA_Ecto-sp13_S_contig1811.5577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1811:7564..9733- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGGAACCCCCTGTAATCTCAGAGGAGCGCTGCTTCCTGCCTTGCT
AGCGCTAGCGAGGCAGGCACACATAGAGAGACCGGGGCGCCGTGCCCCCG
TTCAGAGCGGAACAAGGGAGCTTTCCGATGGGTTGCATGCGGAGGGATAT
GGTGACACGAACGACATGGATCGTGCTGGGCGTACAGCTACTTGCGGGAC
TGTGCGAGGGCTCAGCGTTCGCGTCAGGTGCCTCCGGCACGCCGGCGCAC
GCGGGGGGGAGCAACGCCCAAGGAAACGGCGGGAGGGCAGGGGCAGGGGC
GGCGATGTCTGCAAAGACCTCTTCGCTGCTATCGTCCGCGAAGAGCGGCG
TGACAGACTTCTTCGCCACGGCCTCTTCCGCTAG
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