mRNA_Ecto-sp13_S_contig18104.5574.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18104.5574.1
Unique NamemRNA_Ecto-sp13_S_contig18104.5574.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18104.5574.1 vs. uniprot
Match: A0A6H5KE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE04_9PHAE)

HSP 1 Score: 531 bits (1369), Expect = 3.570e-187
Identity = 263/295 (89.15%), Postives = 274/295 (92.88%), Query Frame = 1 
Query:    1 AAAAAPKEEEYERNPEFLPVQADRLPGTPGGRLDVPSEIPEMEPADVWLGDLMRQAMTQENENATAQQQPKHEMKPDTSGGMSYPLGAQQQFFLSHLSGVGSVSYFLPKHLDEGHQPTARMNPTARATASWPPCHPAHHKQHTPQPSAPPASNVGWVKDAGSAVIGESPTTALYPSSTTNVRSPSMSTASTDVSPLQGPGTTSYDAFPQGDCRLDAVGGGARTATAGGVCGDLSSGSNGGPPLIRTGACGPHDHPVAAGGVFPGDMAAIKTEFCHHSFPPPGASSLGSSTHWSAF 885
            AAA APKEEEYER PEF  +QADRLPGTPGGRLD+PSEIPE+EPADVWLGDLMRQAMTQE+ENATAQQQPKHE KPDTSGGMSYPLGAQQQFFLSHLSGVG+VSYFLPKH+DE HQPTARMNPTARATASWPPCHPAHHKQHTPQPS PP+SNVGWVKDAGSAVIGESPTTALYPSSTTN R PSMSTAST VSP Q PG TSY+A PQGDCRLDAVGGGARTA AGGVCGDLSS SNGGPPL+R GA GPHDHP A+GGV PGDMAAIKTE+CHHSFPPPG SSLGSSTHWSAF
Sbjct:  176 AAAVAPKEEEYERIPEFQSLQADRLPGTPGGRLDMPSEIPELEPADVWLGDLMRQAMTQESENATAQQQPKHETKPDTSGGMSYPLGAQQQFFLSHLSGVGNVSYFLPKHVDESHQPTARMNPTARATASWPPCHPAHHKQHTPQPSVPPSSNVGWVKDAGSAVIGESPTTALYPSSTTNARCPSMSTASTGVSPFQRPGITSYNALPQGDCRLDAVGGGARTAGAGGVCGDLSSSSNGGPPLVRAGARGPHDHP-ASGGVLPGDMAAIKTEYCHHSFPPPGTSSLGSSTHWSAF 469
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BLAST of mRNA_Ecto-sp13_S_contig18104.5574.1 vs. uniprot
Match: D8LH44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH44_ECTSI)

HSP 1 Score: 517 bits (1331), Expect = 9.780e-184
Identity = 261/291 (89.69%), Postives = 266/291 (91.41%), Query Frame = 1 
Query:   19 KEEEYERNPEFLPVQADRLPGTPGGRLDVPSEIPEMEPADVWLGDLMRQAMTQENENATAQQQPKHEMKPDTSGGMSYPLGAQQQFFLSHLSGVGSVSYFLPKHLDEGHQPTARMNPTARATASWPPCHPAHHKQHTPQPSAPPASNVGWVKDAGSAVIGESPTTALYPSSTTNVRSPSMSTASTDVSPLQGPGTTSYDAFPQGDCRLDAVGGGARTATAGGV--CGDLSSGSNGGPPLIRTGACGPHDHPVAAGGVFPGDMAAIKTEFCHHSFPPPGASSLGSSTHWSAF 885
            KEEEYER PEF  +QADRLPGTPGGRLD+P EIPEMEPADVWLGDLMRQAMTQENENATAQQQPK EMKPDTSGGMSYPL AQQQFFLSHLSGVGSVSYFLPKHLDEGH+PTARMNPTARATASWPPCHP HHKQHTPQPS PP+SNVGWVKDAGSAVIGESPTTALYPSSTTNVRSPSMSTASTDVSPLQGPG TSYDA PQGDCRLDAV  GARTA+ GG    GDLSS S G PPLIR GA GPHDHPVAAGGVFPGDMAAIK EFCHHSF PPGASSLGSS HWSAF
Sbjct:   28 KEEEYERIPEFQSLQADRLPGTPGGRLDMPPEIPEMEPADVWLGDLMRQAMTQENENATAQQQPKREMKPDTSGGMSYPLRAQQQFFLSHLSGVGSVSYFLPKHLDEGHRPTARMNPTARATASWPPCHPVHHKQHTPQPSVPPSSNVGWVKDAGSAVIGESPTTALYPSSTTNVRSPSMSTASTDVSPLQGPGITSYDALPQGDCRLDAVSCGARTASCGGGGGVGDLSSSSIGEPPLIRAGARGPHDHPVAAGGVFPGDMAAIKAEFCHHSFAPPGASSLGSSPHWSAF 318
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18104.5574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE04_9PHAE3.570e-18789.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH44_ECTSI9.780e-18489.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18104contigEcto-sp13_S_contig18104:2661..3548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size888
Hectar predicted targeting categoryother localisation
Exons1
Cds size888
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.0363712-CDS-Ecto-sp13_S_contig18104:2660..35481681462935.0363712-CDS-Ecto-sp13_S_contig18104:2660..3548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18104 2661..3548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18104.5574.1prot_Ecto-sp13_S_contig18104.5574.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18104 2661..3548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18104.5574.1

>prot_Ecto-sp13_S_contig18104.5574.1 ID=prot_Ecto-sp13_S_contig18104.5574.1|Name=mRNA_Ecto-sp13_S_contig18104.5574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=296bp
AAAAAPKEEEYERNPEFLPVQADRLPGTPGGRLDVPSEIPEMEPADVWLG
DLMRQAMTQENENATAQQQPKHEMKPDTSGGMSYPLGAQQQFFLSHLSGV
GSVSYFLPKHLDEGHQPTARMNPTARATASWPPCHPAHHKQHTPQPSAPP
ASNVGWVKDAGSAVIGESPTTALYPSSTTNVRSPSMSTASTDVSPLQGPG
TTSYDAFPQGDCRLDAVGGGARTATAGGVCGDLSSGSNGGPPLIRTGACG
PHDHPVAAGGVFPGDMAAIKTEFCHHSFPPPGASSLGSSTHWSAF*
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mRNA from alignment at Ecto-sp13_S_contig18104:2661..3548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18104.5574.1 ID=mRNA_Ecto-sp13_S_contig18104.5574.1|Name=mRNA_Ecto-sp13_S_contig18104.5574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=888bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18104:2661..3548- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGCGGCGGCGCCCAAGGAGGAGGAGTACGAGCGGAACCCCGAGTT
CCTGCCGGTGCAGGCTGACCGGTTGCCGGGCACCCCGGGCGGGCGACTGG
ACGTGCCGTCGGAGATCCCGGAGATGGAGCCTGCTGATGTTTGGCTGGGG
GACCTCATGCGGCAGGCCATGACGCAGGAAAACGAGAACGCCACCGCCCA
GCAGCAGCCGAAGCACGAGATGAAACCGGACACCTCTGGCGGGATGAGCT
ACCCCTTAGGGGCGCAGCAGCAGTTTTTCCTGTCACACCTTTCTGGAGTG
GGCAGCGTTTCTTACTTCCTTCCAAAGCACCTCGACGAGGGTCACCAGCC
AACGGCACGGATGAACCCGACAGCGAGAGCGACAGCAAGCTGGCCACCAT
GCCATCCCGCACACCACAAGCAGCACACCCCGCAGCCGTCCGCACCTCCC
GCGAGCAACGTCGGCTGGGTCAAGGACGCCGGCTCCGCTGTCATCGGGGA
ATCACCCACGACGGCGTTATACCCGTCATCGACCACCAACGTGCGTTCCC
CCTCCATGTCGACGGCTTCGACGGACGTGTCCCCCCTCCAAGGACCGGGA
ACCACTTCTTACGATGCCTTCCCGCAGGGAGACTGCCGCCTGGATGCCGT
CGGCGGTGGCGCGAGAACAGCGACCGCCGGCGGCGTTTGCGGCGACCTCT
CGAGCGGCAGCAACGGAGGGCCGCCGTTGATTCGGACTGGGGCTTGCGGG
CCACACGACCACCCGGTGGCGGCGGGGGGCGTGTTTCCGGGAGACATGGC
GGCAATCAAGACGGAGTTTTGTCACCACTCGTTTCCGCCACCGGGGGCGT
CGTCCCTGGGGAGCAGCACTCACTGGAGCGCGTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18104:2661..3548-

>mRNA_Ecto-sp13_S_contig18104.5574.1 ID=mRNA_Ecto-sp13_S_contig18104.5574.1|Name=mRNA_Ecto-sp13_S_contig18104.5574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18104:2661..3548- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGCGGCGGCGCCCAAGGAGGAGGAGTACGAGCGGAACCCCGAGTT
CCTGCCGGTGCAGGCTGACCGGTTGCCGGGCACCCCGGGCGGGCGACTGG
ACGTGCCGTCGGAGATCCCGGAGATGGAGCCTGCTGATGTTTGGCTGGGG
GACCTCATGCGGCAGGCCATGACGCAGGAAAACGAGAACGCCACCGCCCA
GCAGCAGCCGAAGCACGAGATGAAACCGGACACCTCTGGCGGGATGAGCT
ACCCCTTAGGGGCGCAGCAGCAGTTTTTCCTGTCACACCTTTCTGGAGTG
GGCAGCGTTTCTTACTTCCTTCCAAAGCACCTCGACGAGGGTCACCAGCC
AACGGCACGGATGAACCCGACAGCGAGAGCGACAGCAAGCTGGCCACCAT
GCCATCCCGCACACCACAAGCAGCACACCCCGCAGCCGTCCGCACCTCCC
GCGAGCAACGTCGGCTGGGTCAAGGACGCCGGCTCCGCTGTCATCGGGGA
ATCACCCACGACGGCGTTATACCCGTCATCGACCACCAACGTGCGTTCCC
CCTCCATGTCGACGGCTTCGACGGACGTGTCCCCCCTCCAAGGACCGGGA
ACCACTTCTTACGATGCCTTCCCGCAGGGAGACTGCCGCCTGGATGCCGT
CGGCGGTGGCGCGAGAACAGCGACCGCCGGCGGCGTTTGCGGCGACCTCT
CGAGCGGCAGCAACGGAGGGCCGCCGTTGATTCGGACTGGGGCTTGCGGG
CCACACGACCACCCGGTGGCGGCGGGGGGCGTGTTTCCGGGAGACATGGC
GGCAATCAAGACGGAGTTTTGTCACCACTCGTTTCCGCCACCGGGGGCGT
CGTCCCTGGGGAGCAGCACTCACTGGAGCGCGTTCTGA
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