prot_Ecto-sp13_S_contig181.5570.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig181.5570.1
Unique Nameprot_Ecto-sp13_S_contig181.5570.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length197
Homology
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BLAST of mRNA_Ecto-sp13_S_contig181.5570.1 vs. uniprot
Match: D7FK40_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK40_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 1.450e-102
Identity = 162/187 (86.63%), Postives = 168/187 (89.84%), Query Frame = 0 
Query:   16 TLAAVLATSTCGEIDP-----RGNYTKTHQRQGLERINHDPAAVKVPSEGSYSAAPDSAQTLPPPVPGLAGDTDVLGHAIRLHQAGDSEAAKDTYNALLEVTPRHADALRLLGLTWYGDAIRIESSGDGSVASAIDISGYFKQAQQFVWRAVLCAKAGREVYLILGDLGEVLRGSGALQDAERVLRS 197
            T+AA  +TS C   D       GNYTKTHQRQG ER+NHD A VKV SEGS SAAPDSAQTLPPPVPGLAGDTDVLGHAIRLHQAGDSEAAKDTY+ALLE TPRHADALRLLGLTWYGDAIRIESSGDGSVASAIDI+GYF+QAQQFVWRAVLCAKAGREVYLILGDLGEVLRGSGALQDAERVLRS
Sbjct:   12 TVAAATSTSICQLNDIFSTACTGNYTKTHQRQGSERVNHDHAGVKVLSEGSCSAAPDSAQTLPPPVPGLAGDTDVLGHAIRLHQAGDSEAAKDTYSALLEATPRHADALRLLGLTWYGDAIRIESSGDGSVASAIDIAGYFEQAQQFVWRAVLCAKAGREVYLILGDLGEVLRGSGALQDAERVLRS 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig181.5570.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK40_ECTSI1.450e-10286.63Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 82..197
e-value: 1.9E-6
score: 29.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 86..178
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..197
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.929

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig181contigEcto-sp13_S_contig181:4246..7094 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig181.5570.1mRNA_Ecto-sp13_S_contig181.5570.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig181 4246..7110 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig181.5570.1 ID=prot_Ecto-sp13_S_contig181.5570.1|Name=mRNA_Ecto-sp13_S_contig181.5570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MDTHMIILVLLLFRQTLAAVLATSTCGEIDPRGNYTKTHQRQGLERINHD
PAAVKVPSEGSYSAAPDSAQTLPPPVPGLAGDTDVLGHAIRLHQAGDSEA
AKDTYNALLEVTPRHADALRLLGLTWYGDAIRIESSGDGSVASAIDISGY
FKQAQQFVWRAVLCAKAGREVYLILGDLGEVLRGSGALQDAERVLRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf