mRNA_Ecto-sp13_S_contig181.5570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig181.5570.1
Unique NamemRNA_Ecto-sp13_S_contig181.5570.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig181.5570.1 vs. uniprot
Match: D7FK40_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK40_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 1.250e-102
Identity = 162/187 (86.63%), Postives = 168/187 (89.84%), Query Frame = 2 
Query:   62 TLAAVLATSTCGEIDP-----RGNYTKTHQRQGLERINHDPAAVKVPSEGSYSAAPDSAQTLPPPVPGLAGDTDVLGHAIRLHQAGDSEAAKDTYNALLEVTPRHADALRLLGLTWYGDAIRIESSGDGSVASAIDISGYFKQAQQFVWRAVLCAKAGREVYLILGDLGEVLRGSGALQDAERVLRS 607
            T+AA  +TS C   D       GNYTKTHQRQG ER+NHD A VKV SEGS SAAPDSAQTLPPPVPGLAGDTDVLGHAIRLHQAGDSEAAKDTY+ALLE TPRHADALRLLGLTWYGDAIRIESSGDGSVASAIDI+GYF+QAQQFVWRAVLCAKAGREVYLILGDLGEVLRGSGALQDAERVLRS
Sbjct:   12 TVAAATSTSICQLNDIFSTACTGNYTKTHQRQGSERVNHDHAGVKVLSEGSCSAAPDSAQTLPPPVPGLAGDTDVLGHAIRLHQAGDSEAAKDTYSALLEATPRHADALRLLGLTWYGDAIRIESSGDGSVASAIDIAGYFEQAQQFVWRAVLCAKAGREVYLILGDLGEVLRGSGALQDAERVLRS 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig181.5570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK40_ECTSI1.250e-10286.63Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig181contigEcto-sp13_S_contig181:4246..7110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score70.5
Seed ortholog evalue1e-09
Seed eggNOG ortholog2880.D7FUH1
Model size607
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_005920.1
Cds size591
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462934.3635955-CDS-Ecto-sp13_S_contig181:4245..43911681462934.3635955-CDS-Ecto-sp13_S_contig181:4245..4391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig181 4246..4391 -
1681462934.3739839-CDS-Ecto-sp13_S_contig181:4744..48591681462934.3739839-CDS-Ecto-sp13_S_contig181:4744..4859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig181 4745..4859 -
1681462934.383574-CDS-Ecto-sp13_S_contig181:5128..53611681462934.383574-CDS-Ecto-sp13_S_contig181:5128..5361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig181 5129..5361 -
1681462934.393634-CDS-Ecto-sp13_S_contig181:6997..70941681462934.393634-CDS-Ecto-sp13_S_contig181:6997..7094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig181 6998..7094 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462934.4031463-UTR-Ecto-sp13_S_contig181:7094..71101681462934.4031463-UTR-Ecto-sp13_S_contig181:7094..7110Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig181 7095..7110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig181.5570.1prot_Ecto-sp13_S_contig181.5570.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig181 4246..7094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig181.5570.1

>prot_Ecto-sp13_S_contig181.5570.1 ID=prot_Ecto-sp13_S_contig181.5570.1|Name=mRNA_Ecto-sp13_S_contig181.5570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MDTHMIILVLLLFRQTLAAVLATSTCGEIDPRGNYTKTHQRQGLERINHD
PAAVKVPSEGSYSAAPDSAQTLPPPVPGLAGDTDVLGHAIRLHQAGDSEA
AKDTYNALLEVTPRHADALRLLGLTWYGDAIRIESSGDGSVASAIDISGY
FKQAQQFVWRAVLCAKAGREVYLILGDLGEVLRGSGALQDAERVLRS
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mRNA from alignment at Ecto-sp13_S_contig181:4246..7110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig181.5570.1 ID=mRNA_Ecto-sp13_S_contig181.5570.1|Name=mRNA_Ecto-sp13_S_contig181.5570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig181:4246..7110- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACTGCTCGTGAGAGATGGACACACACATGATCATCCTGGTGCTCTTGC
TCTTTCGCCAGACCCTTGCTGCTGTGTTGGCAACAAGCACTTGCGGCGAA
ATTGATCCGAGAGGTGTGTATCCTGGTGTCCGGCCGTTGGCAAATGCTCT
TTTACCGGTCATACGGACATACCTTTTTCGTGTAGTCTAGCACGGGTCGG
GCAGGGGCAATAGGATCTGCGGGCGTTGGGTTTATGTGAATAGAATGGAA
GACCAGACGTATTCAACACCGAAGCACTCTCGATTAAACGAAGAGCAAAC
ACGAAAGGTTCTCGATACATCGGGTGGCTGGCGGCACACTACACTACGTA
CAGCAGTACGCACCCCGTGCATCAGTCGACTGGTTGAAGCAAAGGATGCG
CCAAAAAGAAGGGAAGAACCAGCTTGGGTTGTTCCTTTTATCATGTGATT
GAGTGGCACGTGGGGTCTAGCAACCGACACACAACCCCCGGATGTAGACT
AGACGTCGTATGTAGACTATTTAGTCCTACCGTTCCGATTGCAGTTCCGA
TGGATCGCAAACACACTGTTCGTGAGGTTGATTATGCCATCCTTACGAAG
GCTACTGCGGTAATACTCATGTGTGGTTTTGAGCTATGCAAGTGCGCAAG
TACGTGGCCGGCCATCGGTCATTTGGATCTTCGGGGTATCTCTATTTGTA
GTGTCTTTGGCATATTATCGCGGGTTCGGTGCTGTCATGTGTCTCCTCGT
TGTTGTATCATCCTTGCTGCCGTGATTCGCTCGTGTGTACCTTCGCGACT
GTGTGCACACATGTAAGATGTTGGGGTATTCGAGCGAAGCGAGGTTTCTA
ATCTGGCCTTAGGTCTCACCACAACAAAGCGCTCCATCAAGAAAAAAAGT
GCGTACGTCTGTTCGCTTTGTGTAGGTTTTAGACTTCATCACTTGCTTTG
AAACGGGAGGTCAGGACCGCACGTGACCACACAGCAGATTGCAGCTATAG
ACACTCACAGCAGACAACACACACACACAGCGGTTTGACTTCTTTATGAA
GCATCATGACCCCGGGTGGTACGACAAAGATATACCGCAAGGTCCAGACT
GTCGCCCAGAACAGATCAGGTCAAAATACGCACCCGCATGTGCGTACTCC
ATGACAATACCCGGATGCCAAGGGGGGCCTGCGCACTTTGACCAGCAGGA
AATTGACCTCTTGTTTGGCTCTAGCGCAGCCCGGACACAATTCATCTCGA
CTGTGCTCGGCCGATCCTGTCGTTACATCAAGGTGGCAATCGCACTGGTG
CGCCATACTTTGCATCGTCAGGCTCAAGGCTCATTCACAGTCTCACCTAG
TATTTGGTCTTATTGATTGCCAAGCTCCCGACTGATCCACCGCCACAGAA
ACCGACTGAGTTCTTCTCGCAATCTAGGCAGCACGAAACCCCCACGGTAG
GAAAGAATCTACTTTTTCTCACTTCGAAGTAGAGTATCGCTGCTTTTCTC
GTAGGTGTCGCACCCTGTTTTTCATTCTCAAGTTCGAGACCCAACAACAG
CTCAACAACTAGTGGAATTGGTACGCTAATGCATTGGTACGAACGGGGCA
AGCTCATTTCACTCTGCCAGCGATGAAGTATGCATCATAGCTCCCGGTAT
GAGCGTCGCAAGCCGCGATAAGCTCGAGCCTACTGTAGCCGCTGCCACCT
CCACGGGCATATTGCCAGTTGAACGATATATTTTCCCCATCTTGTGCAGG
GAACTACACCAAGACTCATCAACGACAAGGATTGGAAAGAATCAACCATG
ACCCCGCTGCGGTAAAAGTTCCGTCGGAGGGGAGTTATTCTGCCGCCCCT
GATTCTGCGCAAACGCTGCCACCTCCTGTTCCTGGTCTCGCTGGCGACAC
CGACGTCCTCGGTCATGCGATACGACTCCACCAAGCCGGGGATTCTGAGG
CGGCGAAAGACACATACAACGCATTGCTGGAGGTGAAGAACTTAAGAGTT
TGCTTTATCGCTGAAATACGGCTGAATTCGCTTCTGAACGATATCCTGCT
TCGAACACGGAGGCCATGCGAACGGTGTCGGGAAATATATTTGCCGCCAA
CGCAACTATGTCGCCGATGTGAGTGCGATAATATGACGCGCGCTTACAGA
CCTCTGTTGCCAACCTACAGCCTCTATAGTATTAGGCACGGTTCGAAGGC
GAATGCAGAACTGTGCGCCGGCCACTAACGTGGAAACCCTGCGGCAAGCA
GGTTACCCCGCGACACGCGGATGCTTTGCGCTTGCTGGGTCTAACATGGT
ACGGCGACGCTATTCGCATCGAGAGCAGCGGGGACGGATCCGTCGCCTCA
GCAATAGACATATCAGGTAGGCTGCAGCAGCTAGCCTAGCTGAATACACA
TCATCATGCATAGTCAGGTCGCTCAAGAATGAAGGGTATGCCATCATGCC
ACGGATGTGATACACCCCGTGCATCCTGCGACCTTCAGTATCAGCTGCCG
CATCATTTCCGAGCTTGCCATAAACAGAGTGAATTGCGGGTCTACCCAAC
CTTGATGACTTTCAAATGTATTATTTCGAACTGTGAACATCAGTGCAATT
GATACTATTTGCTGTAGGGTTCACCTCTTGACGCGATTATTTTTTGTCGT
TTGCGCACCGATTTTTTTTCCACACAACACTTCGCGCTTTGCTTCATCTA
CCACAATGCAACACTTCAGGATATTTCAAACAGGCCCAGCAATTTGTTTG
GCGAGCGGTACTCTGCGCCAAGGCAGGGCGAGAAGTATATTTGATACTCG
GAGACCTGGGAGAGGTACTTCGAGGTTCAGGGGCGCTGCAGGACGCAGAG
CGGGTTTTGAGGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig181:4246..7110-

>mRNA_Ecto-sp13_S_contig181.5570.1 ID=mRNA_Ecto-sp13_S_contig181.5570.1|Name=mRNA_Ecto-sp13_S_contig181.5570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig181:4246..7110- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACACACATGATCATCCTGGTGCTCTTGCTCTTTCGCCAGACCCT
TGCTGCTGTGTTGGCAACAAGCACTTGCGGCGAAATTGATCCGAGAGGGA
ACTACACCAAGACTCATCAACGACAAGGATTGGAAAGAATCAACCATGAC
CCCGCTGCGGTAAAAGTTCCGTCGGAGGGGAGTTATTCTGCCGCCCCTGA
TTCTGCGCAAACGCTGCCACCTCCTGTTCCTGGTCTCGCTGGCGACACCG
ACGTCCTCGGTCATGCGATACGACTCCACCAAGCCGGGGATTCTGAGGCG
GCGAAAGACACATACAACGCATTGCTGGAGGTTACCCCGCGACACGCGGA
TGCTTTGCGCTTGCTGGGTCTAACATGGTACGGCGACGCTATTCGCATCG
AGAGCAGCGGGGACGGATCCGTCGCCTCAGCAATAGACATATCAGGATAT
TTCAAACAGGCCCAGCAATTTGTTTGGCGAGCGGTACTCTGCGCCAAGGC
AGGGCGAGAAGTATATTTGATACTCGGAGACCTGGGAGAGGTACTTCGAG
GTTCAGGGGCGCTGCAGGACGCAGAGCGGGTTTTGAGGAGC
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