mRNA_Ecto-sp13_S_contig18091.5566.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18091.5566.1 vs. uniprot
Match: A0A6H5KJL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL2_9PHAE) HSP 1 Score: 969 bits (2504), Expect = 0.000e+0 Identity = 585/708 (82.63%), Postives = 606/708 (85.59%), Query Frame = 1
Query: 4 AKGEKFERAIQWGVPIVTAGWLLRCAEHGFEPGLEGSFAPPQSLSTVAPVGTATESTXXXXXXXXXXXXXCVGVPVDENKPPTQFFLAGAPRVEHRPSDGSPYKKSTSSSSGRVAVATNCEVVVQAPSPPAITATAFGSGDGGQALPNETSGSMREGGCGRSLPLAGGSPLLPKRQHQPQRRHEGDDVRGEDGHRPNNPSGDPRALARDLLAAGAQAEVPPLSPRKAPKGETANPEKAEGTEDIGTVGVATAVVSQFSTPTPLATGASRDVSDRARASSERMASRTAXXXXXXXXXXXXXXQESGEHHGKGWPNESAVHGARDGNKDESTNSIRHDSDVGHNENSATATATSATTENTAPSTGLEQQLLSMLSGARRGSXXXXXSLSANDAPPGGAGRLQGPRARRLRLNAWSARPTSTRASPSAESSAPTAGGTRVSARCALGEAARGLGVAPSCFPPPAPHHLASSRLPSVGDGDAPFRGQFSAETGHAAVGRLSAEWPSPNPVGASPSGSSGRESRAGPAXXXXXXXXXXXXXXXXXXXXXXXXX-------------TAASSSPFSGTGSRPGGMRPG---QPNQGFGGGGVSVSPRDAQPLLHSDEPGPPSDGRTDIGGDGGGSDGGGYVNVVTGLENEPGEGCRGVGXXXXXGLDGRHRDGGLPRGSSSDGIGKVGSGSPTAVEQENDKSQRRLGGDQYANA 2079
AKGEKFERAIQWGVP+VTAGWLLRCAEHGFEPGLEGSFAPPQSLSTVAPV TATEST CVGVPVDENKPPTQ F A P VEHR SDGSP+ KS SSSSGRVA+AT+CEVVVQ PSPPAITAT GSGDGG+ALPNETSGSMREGGCGRSLPLAGGSPL+P+RQHQ QRRHEGDDVRGEDGHRPNNPSGDPRALAR+LLAAG AEVPPLSPRKAPK ETA+PE+AEGTE I T+GVATAVVSQ STP PLA GASR+VSDRARASS+RMASRTA XXXXXX +ESGEHHG GWP+ESAVHGARDGN DESTNSIRHDSDVGHNENSATA TSATTENTAPSTGLEQQLLSMLSGAR XXXXX LSANDAPPGGAGRLQGPRARRLRLNAWSARPTSTRASPSA+SSAPTAGGT VSARCALGEAARG GVAPSCFPPPAPHHLASSRLPSVGDGDAPFRG FSAET AAVGRLSAEWPSP+P GASPSGSSGRE RAGP XXXXXXXXXXXXXXXXXXXXXX T ASSSPFSGTG RPGG+RPG QPNQGF GGGVSVSPRDA+ LLHSDEPGPPSDGRTD G GGGSD GGY VTGLENEPGEGC GVG GL GRHRDGGL R SSSD IGKVGSGS T VEQENDKSQRR GG+Q+A A
Sbjct: 1040 AKGEKFERAIQWGVPVVTAGWLLRCAEHGFEPGLEGSFAPPQSLSTVAPVDTATESTSAAAAAAPAT---CVGVPVDENKPPTQPFSADVPGVEHRLSDGSPHNKSRSSSSGRVAIATDCEVVVQPPSPPAITATTCGSGDGGEALPNETSGSMREGGCGRSLPLAGGSPLIPQRQHQQQRRHEGDDVRGEDGHRPNNPSGDPRALARELLAAGGHAEVPPLSPRKAPKDETADPEQAEGTEGIRTMGVATAVVSQCSTPPPLAMGASRNVSDRARASSDRMASRTAAGSGXXXXXX----RESGEHHGNGWPHESAVHGARDGNNDESTNSIRHDSDVGHNENSATAATTSATTENTAPSTGLEQQLLSMLSGARXXXXXXXXRLSANDAPPGGAGRLQGPRARRLRLNAWSARPTSTRASPSAQSSAPTAGGTAVSARCALGEAARGSGVAPSCFPPPAPHHLASSRLPSVGDGDAPFRGPFSAETSRAAVGRLSAEWPSPSPSGASPSGSSGREYRAGPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTDASSSPFSGTGRRPGGLRPGRRCQPNQGFDGGGVSVSPRDARLLLHSDEPGPPSDGRTD--GGGGGSDSGGYGGDVTGLENEPGEGCIGVGVSRGGGLVGRHRDGGLSRESSSDDIGKVGSGSLTPVEQENDKSQRRRGGEQHAEA 1738
BLAST of mRNA_Ecto-sp13_S_contig18091.5566.1 vs. uniprot
Match: D7G795_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G795_ECTSI) HSP 1 Score: 545 bits (1405), Expect = 5.370e-171 Identity = 440/821 (53.59%), Postives = 466/821 (56.76%), Query Frame = 1
Query: 1 QAKGEKFERAIQWGVPIVTAGWLLRCAEHGFEPGLEGSFAPPQSLSTVAPVGTATESTXXXXXXXXXXXXXCVGVPVDENKPPTQFFLAGAPRVEHRPSDGSPYKKSTSSSSGRVAVATNCEVVVQAPSPPAITATAFGSGDGGQALPNETSGSMREGGCGRSLPLAGGSPLLPKRQHQPQRRHEGDDVRGEDGHRPNNPSGDPRALARDLLAAGAQAEVPPLSPRKAPKGETANPEKAEGTEDIGTVGVATAVVSQFSTPTPLATGASRDVSDRARASSERMASRTAXXXXXXXXXXXXXX--QESGEHHGKGWPNESAVHGARDGNKDESTNSIRHDSDVGHNENSATATATSATTENTAPSTGLEQQLLSMLSGARRGSXXXXXSLSANDAPPGGAGRLQGPRARRLRLNAWSARPTSTRASPSAESSAPT--AGGTRVSARCALGEAARGLGVAPSCFPPPAPHHLASSRLPSVGDGDAPFRGQFSAETGHAAVGRLSAEWPSPNPVGASPSGSSGRESRAGPAXXXXXXXXXXXXXXXXXXXXXXXXXTAASSSPFSGTGSRPGGMRPG---QPNQGFGGGGVSVSPRDAQPLLHSDEPGPPSDGRTDIGGDGGGSDGGGYVNVVTGLENEPGEGCRGVGXXXXXGLDGRHRDGGLPRGSSSDGIGKVGSGSPTAVEQENDKSQRRLGGDQYANAAEAPRVRQKQQHXXXXXXXXXXXXAWYGRDTTSIDSGGSRRRSSGERGLDPKRPPVRRHQQRREQRRSXXXXHDXXXXXXXNRYGHRHELEYQQQDSLGMEEESQIVTYGEQYNPATGWIR 2442
+AKGEKFERAIQWGVP+VTAGWLLRCAEHG+EPGLEGSFAPPQS+ST GT T+F + A T+ E + APSP +T LL Q P+ P G R + R P++ G + G ++ P MASRTA XXXXXXXXXXXX QESGEHHGKGWPNE AVHGARDGNKDE+TNSIRHDSDVGHN+NSA A XXXXXSLSANDAPPGGAGRLQGPRARRLRLNAWSARPTSTRASPSAESSAPT AGGT VS R ALGEAARG GVAPSCFPPPAPHHLASSRLP VGDG PFRG FSAETGHAAVGRLSAE S GRESRAGP TAAS SP SGTG RPGG+RPG Q N+GF G GV V PRDA+PLLHS EPGPPSDG+TD G VV GLENEPGE CRG G GLDGRHRDG LP GSSSDG GK GSGS TA EQENDKSQRR GG+QY AAEAPR + XXXXXXXXXXXX WYGRDT+SI ERGLDPKRPPVRRHQQRREQ R XXXX XXXXXX NR HRHELEYQQQDSL +EEESQIVTYGEQYNPATGWIR
Sbjct: 902 EAKGEKFERAIQWGVPVVTAGWLLRCAEHGYEPGLEGSFAPPQSVSTSNRSGTKV----------------------------TKFAVKAV-----------------------TAPTTHPETL--APSP--VTCL-----------------------------------LLAVMQKSPR-----------------CPQGKLRTMRRRT------------------------PKRRRGWKPFGPW--------EWRAPW--------------------MASRTAAGXXXXXXXXXXXXXSQESGEHHGKGWPNERAVHGARDGNKDETTNSIRHDSDVGHNDNSAKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSANDAPPGGAGRLQGPRARRLRLNAWSARPTSTRASPSAESSAPTCTAGGTGVSTRGALGEAARGSGVAPSCFPPPAPHHLASSRLPPVGDGGTPFRGPFSAETGHAAVGRLSAEGSSSXXXXXXXXXXXGRESRAGPGAAAAAAPMIFVADNVDENDRG----TAASFSPLSGTGRRPGGLRPGRRCQQNEGFDG-GVGVPPRDARPLLHSHEPGPPSDGKTD--GXXXXXXXXXXXXVVVGLENEPGECCRGGGG----GLDGRHRDGSLPSGSSSDGTGKFGSGSLTAAEQENDKSQRRRGGEQYPTAAEAPRGQDNXXXXXXXXXXXXXXXXWYGRDTSSIXXXXXXXXXXSERGLDPKRPPVRRHQQRREQXRPXXXXXXXXXXXXENRCWHRHELEYQQQDSLEVEEESQIVTYGEQYNPATGWIR 1552 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18091.5566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18091.5566.1 >prot_Ecto-sp13_S_contig18091.5566.1 ID=prot_Ecto-sp13_S_contig18091.5566.1|Name=mRNA_Ecto-sp13_S_contig18091.5566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=661bp MREGGCGRSLPLAGGSPLLPKRQHQPQRRHEGDDVRGEDGHRPNNPSGDPback to top mRNA from alignment at Ecto-sp13_S_contig18091:2..2957- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18091.5566.1 ID=mRNA_Ecto-sp13_S_contig18091.5566.1|Name=mRNA_Ecto-sp13_S_contig18091.5566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18091:2..2957- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18091:2..2957- >mRNA_Ecto-sp13_S_contig18091.5566.1 ID=mRNA_Ecto-sp13_S_contig18091.5566.1|Name=mRNA_Ecto-sp13_S_contig18091.5566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1983bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18091:2..2957- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |