mRNA_Ecto-sp13_S_contig18089.5564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18089.5564.1
Unique NamemRNA_Ecto-sp13_S_contig18089.5564.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: D7FUE0_ECTSI (40S ribosomal protein S27 n=3 Tax=PX clade TaxID=569578 RepID=D7FUE0_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.200e-28
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 3 
Query:    3 PADLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            PADLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQ  +
Sbjct:    2 PADLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVV 52
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: F0YBZ0_AURAN (40S ribosomal protein S27 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBZ0_AURAN)

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-23
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3 
Query:    9 DLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            DLLHP+S  EKR HKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQ  +
Sbjct:    4 DLLHPSSVEEKRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTTV 52
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: A0A835Z0C8_9STRA (40S ribosomal protein S27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0C8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-23
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3 
Query:    3 PADLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            P D+LHP++  EKR HKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQ  +
Sbjct:    2 PHDILHPSAEEEKRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVV 52
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: A0A2R5GQA7_9STRA (40S ribosomal protein S27 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQA7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.840e-23
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 3 
Query:    9 DLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            DLLHP+++ EKR HKLKRLVQSPNSFFMDVKCPGCF ITT+FSHAQ R+
Sbjct:    4 DLLHPSAAEEKRKHKLKRLVQSPNSFFMDVKCPGCFKITTIFSHAQTRV 52
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: A0A482S4Q3_9ARCH (30S ribosomal protein S27e n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4Q3_9ARCH)

HSP 1 Score: 91.3 bits (225), Expect = 3.620e-23
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:    3 PADLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            P DL HP+ + EK+ HKLKRLVQSPNSFFMDV+CPGCF+ITT+FSHAQVR+
Sbjct:    2 PVDLFHPSQADEKQQHKLKRLVQSPNSFFMDVRCPGCFHITTLFSHAQVRV 52
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: A0A168P4M0_ABSGL (40S ribosomal protein S27 n=21 Tax=Mucorales TaxID=4827 RepID=A0A168P4M0_ABSGL)

HSP 1 Score: 90.1 bits (222), Expect = 1.600e-22
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 3 
Query:    9 DLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            DLLHPT  HEKR HKLKRLVQSPNS+FMDVKCPGC NI+TVFSHAQ  +
Sbjct:    6 DLLHPTVEHEKRSHKLKRLVQSPNSYFMDVKCPGCLNISTVFSHAQTVV 54
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: A0A067BWG4_SAPPC (40S ribosomal protein S27 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BWG4_SAPPC)

HSP 1 Score: 89.7 bits (221), Expect = 2.150e-22
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 3 
Query:    9 DLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            DLLHP++S E+  HKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQ  +
Sbjct:    4 DLLHPSASEERSKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVV 52
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: A0A397T340_9GLOM (40S ribosomal protein S27 (Fragment) n=10 Tax=Glomeromycetes TaxID=214506 RepID=A0A397T340_9GLOM)

HSP 1 Score: 89.7 bits (221), Expect = 2.210e-22
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 3 
Query:    9 DLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            DLL+PT  HEKR HKLKRLVQSPNS+FMDVKCPGCF+ITTVFSHAQ  +
Sbjct:    6 DLLNPTPEHEKRQHKLKRLVQSPNSYFMDVKCPGCFSITTVFSHAQTVV 54
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: A0A1Y1YCA3_9FUNG (40S ribosomal protein S27 n=5 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YCA3_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 2.220e-22
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 3 
Query:    9 DLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            DLL+PT  HEK  HKLKRLVQSPNS+FMDVKCPGCFNITTVFSHAQ  +
Sbjct:   18 DLLNPTVEHEKNTHKLKRLVQSPNSYFMDVKCPGCFNITTVFSHAQTVV 66
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BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Match: B8CCJ1_THAPS (RS27, ribosomal protein 27 40S small ribosomal subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCJ1_THAPS)

HSP 1 Score: 89.4 bits (220), Expect = 3.050e-22
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:    3 PADLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQVRI 155
            P DLLHPT+  E R HKLKRLV SPNSFFMD+KCPGCF ITTVFSHAQ  +
Sbjct:    2 PVDLLHPTAEQEARTHKLKRLVASPNSFFMDIKCPGCFQITTVFSHAQTVV 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18089.5564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE0_ECTSI1.200e-2894.1240S ribosomal protein S27 n=3 Tax=PX clade TaxID=5... [more]
F0YBZ0_AURAN1.300e-2385.7140S ribosomal protein S27 n=1 Tax=Aureococcus anop... [more]
A0A835Z0C8_9STRA1.300e-2380.3940S ribosomal protein S27 n=1 Tax=Tribonema minus ... [more]
A0A2R5GQA7_9STRA1.840e-2381.6340S ribosomal protein S27 n=1 Tax=Hondaea fermenta... [more]
A0A482S4Q3_9ARCH3.620e-2376.4730S ribosomal protein S27e n=1 Tax=archaeon TaxID=... [more]
A0A168P4M0_ABSGL1.600e-2281.6340S ribosomal protein S27 n=21 Tax=Mucorales TaxID... [more]
A0A067BWG4_SAPPC2.150e-2281.6340S ribosomal protein S27 n=6 Tax=Saprolegniaceae ... [more]
A0A397T340_9GLOM2.210e-2281.6340S ribosomal protein S27 (Fragment) n=10 Tax=Glom... [more]
A0A1Y1YCA3_9FUNG2.220e-2281.6340S ribosomal protein S27 n=5 Tax=Basidiobolus mer... [more]
B8CCJ1_THAPS3.050e-2276.47RS27, ribosomal protein 27 40S small ribosomal sub... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18089contigEcto-sp13_S_contig18089:2061..3012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462934.0479608-CDS-Ecto-sp13_S_contig18089:2060..21421681462934.0479608-CDS-Ecto-sp13_S_contig18089:2060..2142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18089 2061..2142 +
1681462934.0582619-CDS-Ecto-sp13_S_contig18089:2939..30071681462934.0582619-CDS-Ecto-sp13_S_contig18089:2939..3007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18089 2940..3007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462934.06798-UTR-Ecto-sp13_S_contig18089:3007..30121681462934.06798-UTR-Ecto-sp13_S_contig18089:3007..3012Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18089 3008..3012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18089.5564.1prot_Ecto-sp13_S_contig18089.5564.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18089 2061..3007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18089.5564.1

>prot_Ecto-sp13_S_contig18089.5564.1 ID=prot_Ecto-sp13_S_contig18089.5564.1|Name=mRNA_Ecto-sp13_S_contig18089.5564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
CRPISCTPPPPTRRGSTSSRGWYRALTASSWTLSAPGASTSQRCSATHR*
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mRNA from alignment at Ecto-sp13_S_contig18089:2061..3012+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18089.5564.1 ID=mRNA_Ecto-sp13_S_contig18089.5564.1|Name=mRNA_Ecto-sp13_S_contig18089.5564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=952bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18089:2061..3012+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGGCCGATCTCTTGCACCCCACCTCCTCCCACGAGAAGAGGGTCCAC
AAGCTCAAGAGGCTGGTACAGAGCCCTAACAGGTGCGTGGAATCGGTTTG
ACCTCCAGCAAGAGAGGAGATTGTGGGTTGGTGGCAGGGCTGCTGTGCAA
GAGATGAATGGATTGTGTGCCTTTGGCACCAGCGTTGGGAGCACAGCAGG
TGCCGCCCTCACCGAAAGCTAGGCCTGTGAGTGGTCACGTTCGCACGTTG
TAAATTGACACATGCCTTCGCTTTTGGGATCGATCGCGCATCAATAAGCC
GCATCGACAACTTTCATCCGTGTGTCTCTGAAAGGCCTCGTCCCATCGCT
TTCGTTGTCCTACACGAGAACCTTGACGCAGAAAGGTCCTCGCTTGCTGC
TCGAAGCTGTGTTTGTGTCGACAGCGGCTGCTGCAAAGTTATGTGTCCGA
TGTTACAAGGCCCCGTGCCATCGGCAAACAGAATCGTGCGGGAGGCTAGT
TAGTAGAGTTGGTTGTGTCGCCGCCTGTCGTTAGGTTTTCCTAGCCTGCA
GGTTGGTTTGTGCTTCGAGACTGTTGTAGACTGCCGTAGGTCTCAAACAA
TCCTCGCCGACATTGGAAATCTCGCCGGAACGAACACCGCTGTTTCGTGT
TTTCATAACAACTGGCAAGTGATGGGTAAAGCTCGCGTGAGTTCAGAGCC
GCGAGAAATCCCTTAGGCTTAGAGAAGACCTTCTGAACACACAAGCACGC
ACAATAGCTTAAAAGCATCATCAGCCTGTTCTAGGACTCAGTATAAGAAC
TCCCCGGTGTTGAACGTCCGCATTATCTCTCGCGCGCGCATGTCACTGCT
GTCTTCGGAAATCTTCTTTTATGCTGTAGCTTCTTCATGGACGTTAAGTG
CCCCGGGTGCTTCAACATCACAACGGTGTTCAGCCACGCACAGGTGAGAA
TT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18089:2061..3012+

>mRNA_Ecto-sp13_S_contig18089.5564.1 ID=mRNA_Ecto-sp13_S_contig18089.5564.1|Name=mRNA_Ecto-sp13_S_contig18089.5564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18089:2061..3012+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGGCCGATCTCTTGCACCCCACCTCCTCCCACGAGAAGAGGGTCCAC
AAGCTCAAGAGGCTGGTACAGAGCCCTAACAGCTTCTTCATGGACGTTAA
GTGCCCCGGGTGCTTCAACATCACAACGGTGTTCAGCCACGCACAGGTGA
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