mRNA_Ecto-sp13_S_contig18088.5563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18088.5563.1
Unique NamemRNA_Ecto-sp13_S_contig18088.5563.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 4.980e-66
Identity = 115/167 (68.86%), Postives = 133/167 (79.64%), Query Frame = 1
Query:   10 GRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQR-LKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
            GR +CL AFIV+LNQ C  QE+RW ASTLELQLVSL+FCGACRR PTLHVRVDRQTPRSLW P  SHA   +R RE CVS+RVPAVQA G+T AL MEVLL  S +E RS S++R+++G++S ASLGSMFWLQ  LK +VF+ D P STA WPASL QL FGD F+Q
Sbjct:   13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPASTASWPASLPQLLFGDRFDQ 179          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 7.520e-55
Identity = 107/169 (63.31%), Postives = 119/169 (70.41%), Query Frame = 1
Query:    1 TISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
            T  G  KCLDAF+V+LNQ C  QE+RW  STLELQLVSL+ CGACRR  TLHVRV  QTP SLW P  +H   N R  +VC+SSRVP VQAFG+T ALPM VL  RS  E RSGS  R+    +SAASL S  W QRLK +VFE D  V+TA WPASLQQL FG  FNQ
Sbjct:    2 TTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQ 170          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 8.760e-48
Identity = 93/166 (56.02%), Postives = 113/166 (68.07%), Query Frame = 1
Query:   10 GRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
            GR +CLDAFIV+L Q    + +RW  STLELQLVSL+FCGACR   +  V++ RQTP SLW PR SH  + +R RE C+ SRVPAVQA G   ALPME+LLPRS  E    SE RQ TG +SA S G M W Q+L  ++F  +  V++  WPA LQ+L FGD FNQ
Sbjct:   25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQ 190          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 3.870e-40
Identity = 88/167 (52.69%), Postives = 109/167 (65.27%), Query Frame = 1
Query:    7 SGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
            +GR +C+DAFIV+LN+ C   EQRW ASTLELQ VSL+FC ACRR PT H                S + V    R V   SR P V+A+ +T AL M+VLL    +E + GS++R+  G +SAA+L SM WLQRLK +V ELDTPV TA WPASLQQL FG +FN+
Sbjct:   14 NGRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVPTSH----------------STSTVG---RLVSGVSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.100e-31
Identity = 73/151 (48.34%), Postives = 88/151 (58.28%), Query Frame = 1
Query:   10 GRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPW 462
            G    LD  IV+LNQ C  QE+RW  STLELQLVSL+ CGACR    LHV V   TP +LW  R S    +QR  EVC S+RVPAVQA   T ALPM+ L  R+  E +  +E R   G + AAS+ S+ W + LK +VF    P     W
Sbjct:   85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVFSRRMPGKAVWW 235          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.100e-28
Identity = 70/150 (46.67%), Postives = 94/150 (62.67%), Query Frame = 1
Query:    4 ISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGS-MFWLQRLKWIVFELDTPVS 450
            I  R +CLDAF+++L+Q C   E+RW ASTLELQL SLD C ACR    LHV VD QTPRSLW  R +    N R   + +SSRVP V+A  +T AL ME LL ++ IE  + SE  ++ G +  +SLGS + W + L  +V   D+ ++
Sbjct:    5 IEWRTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDIA 154          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.720e-27
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   13 RRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREV 240
            R KCLDAF+V+LNQ C  QE+RW ASTLELQLVSL+FCGACR  PTLHVRVDR+TPRSLW PR +    ++R R+V
Sbjct:   38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.160e-26
Identity = 71/172 (41.28%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    1 TISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDT---PVSTAPWPASLQQLEFGDEFNQ 507
            T   +R+CLDAF+V+L+Q     E+RW  STL+LQL SL+FCGACR  P LHV VD +TP +LW       ++ Q       S+RVPAVQA G+T A P E  L  +  E  +  E  Q+      A+L S+ W Q L+ +V +      P+    WP+SL+ L F   F+Q
Sbjct:    2 TSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLW-------SLGQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVMDCTVFIIPLEMMSWPSSLKSLTFAGIFDQ 166          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 8.430e-24
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    4 ISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPR 183
            + GRRKCLDAFIV+LNQ C  +E RW ASTLELQLVSL FCGACRR PTLHVRVDRQTPR
Sbjct:    3 LEGRRKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRVDRQTPR 62          
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5KJ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ66_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.680e-23
Identity = 58/81 (71.60%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  265 VQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
            +QAFG+T ALPMEVLL  S IEQ SGSE+R   G TSAASLGSM WLQ  K +VFE+D PVS APWPA LQQL FGD FNQ
Sbjct:    1 MQAFGLTWALPMEVLLQSSAIEQPSGSEYRHTKGHTSAASLGSMCWLQVPKRMVFEVDKPVSMAPWPACLQQLSFGDHFNQ 81          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KLV1_9PHAE4.980e-6668.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNI6_9PHAE7.520e-5563.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K9_9PHAE8.760e-4856.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2L2_9PHAE3.870e-4052.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK8_ECTSI3.100e-3148.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LIJ3_9PHAE3.100e-2846.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z9_ECTSI4.720e-2769.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V9_9PHAE2.160e-2641.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3G0_ECTSI8.430e-2481.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ66_9PHAE2.680e-2371.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18088contigEcto-sp13_S_contig18088:2114..3544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1431
Hectar predicted targeting categoryother localisation
Exons1
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462934.0068862-UTR-Ecto-sp13_S_contig18088:2113..29261681462934.0068862-UTR-Ecto-sp13_S_contig18088:2113..2926Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18088 2114..2926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462934.0220368-CDS-Ecto-sp13_S_contig18088:2926..35441681462934.0220368-CDS-Ecto-sp13_S_contig18088:2926..3544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18088 2927..3544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18088.5563.1prot_Ecto-sp13_S_contig18088.5563.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18088 2927..3544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18088.5563.1

>prot_Ecto-sp13_S_contig18088.5563.1 ID=prot_Ecto-sp13_S_contig18088.5563.1|Name=mRNA_Ecto-sp13_S_contig18088.5563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
TISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPT
LHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPM
EVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVS
TAPWPASLQQLEFGDEFNQPIAEVEWPASLQQLSFGYRFNQPIADVVWPA
SLQHL*
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mRNA from alignment at Ecto-sp13_S_contig18088:2114..3544-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18088.5563.1 ID=mRNA_Ecto-sp13_S_contig18088.5563.1|Name=mRNA_Ecto-sp13_S_contig18088.5563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1431bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18088:2114..3544- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTATCTCAGGACGACGCAAGTGCCTGGACGCCTTCATCGTCTCCTTGAA CCAGATTTGCGGTAGACAAGAACAACGTTGGATTGCGTCTACACTGGAGC TACAGCTCGTGTCGCTGGACTTTTGTGGGGCGTGCAGGCGTTGCCCGACC TTGCATGTGCGTGTCGATCGACAAACGCCTCGTAGTTTGTGGTGTCCTCG CAACTCACACGCGGCAGTCAATCAGCGACGCCGGGAGGTTTGCGTCTCGA GTCGTGTCCCGGCTGTGCAGGCTTTCGGTGTGACGTGTGCGCTTCCGATG GAGGTACTGCTGCCTCGTTCGCAAATCGAGCAGCGGTCAGGATCAGAATT TAGGCAGATGACGGGAGATACATCTGCAGCAAGCCTAGGATCGATGTTTT GGCTTCAAAGGCTCAAATGGATCGTATTTGAATTGGATACGCCCGTCAGC ACGGCGCCGTGGCCGGCGTCCCTGCAGCAGCTAGAGTTTGGAGATGAGTT CAACCAGCCCATCGCCGAAGTCGAGTGGCCGGCCTCCCTGCAGCAGCTAT CGTTTGGTTATCGGTTCAACCAGCCCATCGCCGACGTTGTGTGGCCGGCC TCGTTACAGCACTTGTAATTTGGAGATGAGTTCAACCAGCCCATCGCCGA AGTCGAATGGCCGCCCTCGTTGCAACAGCTGTCATTTGGAGATGAATTCT ACCAGCCTATTGCCGAAGTCGAGTGGCCGGCCTCGTTGCAGAAGCTGTCG TTTGGACGGTCCTTCAGCAGGCCAATCGCGAAAGTCGCGTGGCCGGCGTC CCTGCAGCAGCTATCGTTTAAAGGTTGGTTTGACCAGCCTCTTGACAAAG TCGTGTGGCCGGCCTCCCTGCAGCAGCTATCGTTTGGAGTGTATTTCAAC CAGCCCATCGCCAACGTCGAGTGGCCGGTCTCCCTGCAGCAGCTATCGTT TGGACGCTACTTCGACCGGCCAATAGCCGACGTCATGTGGCCGACCTCCC TGCAGCATCTATCGTTTGGAGATCATTTCAACCAGCCCATCGCCGGGGTC GCGTGGCCAGCCTCGCTGCAGCACCTATGGTTTGGTTTTCACTTCAACCA GACAATCACTGACGTTGTGTGGCCGGCCTCCCTGCAACGGCTATCGTTTG GATCGTATTTCAACCAGTCCATCGCCGAAGTCGAATGGCCGGCCTCCCTG CAGCAGCTATCGTTTGGATTTTTCTTCAACCAGCCTCTTGGTGGAGTCTT GTGGCCGGCCTCGCTGCAGAAGCTATGGTTCGGGTATAGATTCAATCAGC CCATCGCCGAAGTCGTGTGGCCGCCCTCCCTTCAGGAAGTATCTTTCGGA GCTGACTTTGAACGACTCGTGGCCGAAGTGACATGGCCGGCGTCCCTACG GAGTGTGACTCGTGACGGAGTTAGTCTTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18088:2114..3544-

>mRNA_Ecto-sp13_S_contig18088.5563.1 ID=mRNA_Ecto-sp13_S_contig18088.5563.1|Name=mRNA_Ecto-sp13_S_contig18088.5563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18088:2114..3544- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTATCTCAGGACGACGCAAGTGCCTGGACGCCTTCATCGTCTCCTTGAA
CCAGATTTGCGGTAGACAAGAACAACGTTGGATTGCGTCTACACTGGAGC
TACAGCTCGTGTCGCTGGACTTTTGTGGGGCGTGCAGGCGTTGCCCGACC
TTGCATGTGCGTGTCGATCGACAAACGCCTCGTAGTTTGTGGTGTCCTCG
CAACTCACACGCGGCAGTCAATCAGCGACGCCGGGAGGTTTGCGTCTCGA
GTCGTGTCCCGGCTGTGCAGGCTTTCGGTGTGACGTGTGCGCTTCCGATG
GAGGTACTGCTGCCTCGTTCGCAAATCGAGCAGCGGTCAGGATCAGAATT
TAGGCAGATGACGGGAGATACATCTGCAGCAAGCCTAGGATCGATGTTTT
GGCTTCAAAGGCTCAAATGGATCGTATTTGAATTGGATACGCCCGTCAGC
ACGGCGCCGTGGCCGGCGTCCCTGCAGCAGCTAGAGTTTGGAGATGAGTT
CAACCAGCCCATCGCCGAAGTCGAGTGGCCGGCCTCCCTGCAGCAGCTAT
CGTTTGGTTATCGGTTCAACCAGCCCATCGCCGACGTTGTGTGGCCGGCC
TCGTTACAGCACTTGTAA
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