mRNA_Ecto-sp13_S_contig18088.5563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 226 bits (577), Expect = 4.980e-66 Identity = 115/167 (68.86%), Postives = 133/167 (79.64%), Query Frame = 1
Query: 10 GRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQR-LKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
GR +CL AFIV+LNQ C QE+RW ASTLELQLVSL+FCGACRR PTLHVRVDRQTPRSLW P SHA +R RE CVS+RVPAVQA G+T AL MEVLL S +E RS S++R+++G++S ASLGSMFWLQ LK +VF+ D P STA WPASL QL FGD F+Q
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPASTASWPASLPQLLFGDRFDQ 179
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 204 bits (520), Expect = 7.520e-55 Identity = 107/169 (63.31%), Postives = 119/169 (70.41%), Query Frame = 1
Query: 1 TISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
T G KCLDAF+V+LNQ C QE+RW STLELQLVSL+ CGACRR TLHVRV QTP SLW P +H N R +VC+SSRVP VQAFG+T ALPM VL RS E RSGS R+ +SAASL S W QRLK +VFE D V+TA WPASLQQL FG FNQ
Sbjct: 2 TTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQ 170
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 182 bits (463), Expect = 8.760e-48 Identity = 93/166 (56.02%), Postives = 113/166 (68.07%), Query Frame = 1
Query: 10 GRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
GR +CLDAFIV+L Q + +RW STLELQLVSL+FCGACR + V++ RQTP SLW PR SH + +R RE C+ SRVPAVQA G ALPME+LLPRS E SE RQ TG +SA S G M W Q+L ++F + V++ WPA LQ+L FGD FNQ
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQ 190
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE) HSP 1 Score: 155 bits (393), Expect = 3.870e-40 Identity = 88/167 (52.69%), Postives = 109/167 (65.27%), Query Frame = 1
Query: 7 SGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
+GR +C+DAFIV+LN+ C EQRW ASTLELQ VSL+FC ACRR PT H S + V R V SR P V+A+ +T AL M+VLL +E + GS++R+ G +SAA+L SM WLQRLK +V ELDTPV TA WPASLQQL FG +FN+
Sbjct: 14 NGRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVPTSH----------------STSTVG---RLVSGVSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 130 bits (326), Expect = 3.100e-31 Identity = 73/151 (48.34%), Postives = 88/151 (58.28%), Query Frame = 1
Query: 10 GRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPW 462
G LD IV+LNQ C QE+RW STLELQLVSL+ CGACR LHV V TP +LW R S +QR EVC S+RVPAVQA T ALPM+ L R+ E + +E R G + AAS+ S+ W + LK +VF P W
Sbjct: 85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVFSRRMPGKAVWW 235
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 128 bits (322), Expect = 3.100e-28 Identity = 70/150 (46.67%), Postives = 94/150 (62.67%), Query Frame = 1
Query: 4 ISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGS-MFWLQRLKWIVFELDTPVS 450
I R +CLDAF+++L+Q C E+RW ASTLELQL SLD C ACR LHV VD QTPRSLW R + N R + +SSRVP V+A +T AL ME LL ++ IE + SE ++ G + +SLGS + W + L +V D+ ++
Sbjct: 5 IEWRTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDIA 154
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 115 bits (287), Expect = 4.720e-27 Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 1
Query: 13 RRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREV 240
R KCLDAF+V+LNQ C QE+RW ASTLELQLVSL+FCGACR PTLHVRVDR+TPRSLW PR + ++R R+V
Sbjct: 38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 121 bits (303), Expect = 2.160e-26 Identity = 71/172 (41.28%), Postives = 97/172 (56.40%), Query Frame = 1
Query: 1 TISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPRSLWCPRNSHAAVNQRRREVCVSSRVPAVQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDT---PVSTAPWPASLQQLEFGDEFNQ 507
T +R+CLDAF+V+L+Q E+RW STL+LQL SL+FCGACR P LHV VD +TP +LW ++ Q S+RVPAVQA G+T A P E L + E + E Q+ A+L S+ W Q L+ +V + P+ WP+SL+ L F F+Q
Sbjct: 2 TSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLW-------SLGQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVMDCTVFIIPLEMMSWPSSLKSLTFAGIFDQ 166
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI) HSP 1 Score: 104 bits (259), Expect = 8.430e-24 Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query: 4 ISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTLHVRVDRQTPR 183
+ GRRKCLDAFIV+LNQ C +E RW ASTLELQLVSL FCGACRR PTLHVRVDRQTPR
Sbjct: 3 LEGRRKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRVDRQTPR 62
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Match: A0A6H5KJ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ66_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.680e-23 Identity = 58/81 (71.60%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 265 VQAFGVTCALPMEVLLPRSQIEQRSGSEFRQMTGDTSAASLGSMFWLQRLKWIVFELDTPVSTAPWPASLQQLEFGDEFNQ 507
+QAFG+T ALPMEVLL S IEQ SGSE+R G TSAASLGSM WLQ K +VFE+D PVS APWPA LQQL FGD FNQ
Sbjct: 1 MQAFGLTWALPMEVLLQSSAIEQPSGSEYRHTKGHTSAASLGSMCWLQVPKRMVFEVDKPVSMAPWPACLQQLSFGDHFNQ 81 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18088.5563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18088.5563.1 >prot_Ecto-sp13_S_contig18088.5563.1 ID=prot_Ecto-sp13_S_contig18088.5563.1|Name=mRNA_Ecto-sp13_S_contig18088.5563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp TISGRRKCLDAFIVSLNQICGRQEQRWIASTLELQLVSLDFCGACRRCPTback to top mRNA from alignment at Ecto-sp13_S_contig18088:2114..3544- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18088.5563.1 ID=mRNA_Ecto-sp13_S_contig18088.5563.1|Name=mRNA_Ecto-sp13_S_contig18088.5563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1431bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18088:2114..3544- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18088:2114..3544- >mRNA_Ecto-sp13_S_contig18088.5563.1 ID=mRNA_Ecto-sp13_S_contig18088.5563.1|Name=mRNA_Ecto-sp13_S_contig18088.5563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18088:2114..3544- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |