mRNA_Ecto-sp13_S_contig18087.5562.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18087.5562.1
Unique NamemRNA_Ecto-sp13_S_contig18087.5562.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18087.5562.1 vs. uniprot
Match: D7FJE1_ECTSI (2-dehydropantoate 2-reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE1_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 4.140e-74
Identity = 115/120 (95.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:    4 YTHGVVIFNTVHAAAALAGGALRDLVRDRHARLLWAAMIREGLQALTLAARGGDWRAANPCCGVTLPQLELLLCLPTFLFSLVSRLLLRFPPMLAPAMQTDLADGRETSVAWTLEEIVRI 363
            YTHGVVIFNTVHAAAALAGG LRDLVRDRHARLLWAAMIREGLQALTLAARGGDWRAANPCCGVTLPQLEL LCLPTFLFSLVS LLLRFPPMLAPAMQ DLADGR+TSVAWTLEEIVRI
Sbjct:   76 YTHGVVIFNTVHAAAALAGGPLRDLVRDRHARLLWAAMIREGLQALTLAARGGDWRAANPCCGVTLPQLELFLCLPTFLFSLVSGLLLRFPPMLAPAMQADLADGRDTSVAWTLEEIVRI 195
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BLAST of mRNA_Ecto-sp13_S_contig18087.5562.1 vs. uniprot
Match: A0A6H5L503_9PHAE (ApbA_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L503_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 2.190e-70
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:    4 YTHGVVIFNTVHAAAALAGGALRDLVRDRHARLLWAAMIREGLQALTLAARGGDWRAANPCCGVTLPQLELLLCLPTFLFSLVSRLLLRFPPMLAPAMQTDLADGRETSVAWTLEEIVRI 363
            YTHGVVIFNTVHA AALAGG+LRDLVRDRHARLLWAAMIREGLQALTLAARGGDWRAANPCCGVTLPQLEL LCLPTFLFSLVS LLLRFPPMLAPAMQ DLADGR+TSVAWTLEEIVRI
Sbjct:  230 YTHGVVIFNTVHAPAALAGGSLRDLVRDRHARLLWAAMIREGLQALTLAARGGDWRAANPCCGVTLPQLELFLCLPTFLFSLVSGLLLRFPPMLAPAMQADLADGRDTSVAWTLEEIVRI 349
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BLAST of mRNA_Ecto-sp13_S_contig18087.5562.1 vs. uniprot
Match: A0A2G6KRZ4_9GAMM (2-dehydropantoate 2-reductase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2G6KRZ4_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.030e-5
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:   13 GVVIFNTVHAAAALAGGALRDLVRDRHARLLWAAMIREGLQALTLAARGGDWRAANPC-CGVTLPQL-ELLLCLPTFLFSLVSRLLLRFPPMLAPAMQTDLADGRETSVAWTLEEIVRIGLFAFLSC 387
            G +I N  +   ALAG  L + +  R  R + AA IRE L+ L  A          P   G   P L   +L LP++LF LV+R +L+  P    +MQ DL  GR+T V +   EI+ +G  + L C
Sbjct:  183 GKLIMNLNNPVNALAGIPLIEELEQRKYRKVLAASIREALEVLKQAG-------IKPARIGKVPPSLMPAILELPSWLFKLVARAMLKIDPQATSSMQEDLVSGRKTEVDYLNGEIITLGEKSGLQC 302
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BLAST of mRNA_Ecto-sp13_S_contig18087.5562.1 vs. uniprot
Match: A0A482SDN2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDN2_9ARCH)

HSP 1 Score: 49.7 bits (117), Expect = 4.530e-5
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:   19 VIFNTVHAAAALAGGALRDLVRDRHARLLWAAMIREGLQALTLAARGGDWRA--ANPCCGVTLPQLELLLCLPTFLFSLVSRLLLRFPP--MLAPAMQTDLADGRETSVAWTLEEIVRI 363
            +I+ T H       G L   +  R  RL+ A +IRE +  L  AARGG W+         +T   LE+ + LP   F+LV      +P   +++PA Q DL +GR+T V   L+E+V +
Sbjct:    1 MIYETCHLLNIFTKGTLNHTLALRSHRLVLALLIREHIDVLEAAARGGKWKPDLLMMTFYLTPKLLEMTVLLPDMCFALVFWFFGLYPRDGVMSPA-QFDLMEGRKTIVLGNLKELVEV 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18087.5562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJE1_ECTSI4.140e-7495.832-dehydropantoate 2-reductase n=1 Tax=Ectocarpus s... [more]
A0A6H5L503_9PHAE2.190e-7095.00ApbA_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A2G6KRZ4_9GAMM1.030e-535.432-dehydropantoate 2-reductase n=2 Tax=Proteobacter... [more]
A0A482SDN2_9ARCH4.530e-533.61Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18087contigEcto-sp13_S_contig18087:354..3514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog description2-dehydropantoate 2-reductase
Ec32 orthologEc-14_006010.1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462933.9608362-CDS-Ecto-sp13_S_contig18087:353..4881681462933.9608362-CDS-Ecto-sp13_S_contig18087:353..488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18087 354..488 +
1681462933.9697793-CDS-Ecto-sp13_S_contig18087:913..10321681462933.9697793-CDS-Ecto-sp13_S_contig18087:913..1032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18087 914..1032 +
1681462933.9779415-CDS-Ecto-sp13_S_contig18087:3378..35141681462933.9779415-CDS-Ecto-sp13_S_contig18087:3378..3514Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18087 3379..3514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18087.5562.1prot_Ecto-sp13_S_contig18087.5562.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18087 354..3514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18087.5562.1

>prot_Ecto-sp13_S_contig18087.5562.1 ID=prot_Ecto-sp13_S_contig18087.5562.1|Name=mRNA_Ecto-sp13_S_contig18087.5562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
AYTHGVVIFNTVHAAAALAGGALRDLVRDRHARLLWAAMIREGLQALTLA
ARGGDWRAANPCCGVTLPQLELLLCLPTFLFSLVSRLLLRFPPMLAPAMQ
TDLADGRETSVAWTLEEIVRIGLFAFLSC*
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mRNA from alignment at Ecto-sp13_S_contig18087:354..3514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18087.5562.1 ID=mRNA_Ecto-sp13_S_contig18087.5562.1|Name=mRNA_Ecto-sp13_S_contig18087.5562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18087:354..3514+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTACACGCACGGTGTTGTCATCTTCAACACCGTGCATGCTGCCGCGGC
CCTGGCGGGGGGGGCGCTGCGAGACCTTGTGCGGGATCGACACGCCCGGC
TGCTGTGGGCAGCCATGATCCGTGAGGGCTTGCAGGTACGATAGTCTTTG
TTTTCACAAAGATAGAAAGAAAGAGGGAGAGAGAGAGGGAGAGAGAGAGG
GAGAGAGAGAGAGAGAGAGAGGGCTGTCAGATGCGAAAGGTGCCATGGAA
TTGGAAACCACGAATACGTGTAGCGCGGGAATACTCCCCCTCGAATCAAT
CTGGCTTCGGCGTGATGGGTGAATGGCGTGTGTGGAGCGATCGGTAGAAG
AAGCGCACGGTGGGGGCGAGTGCGCTCGTGAGGCTCCTGTCACGCAAGGA
GGGCATTGGGGTCTGGGCGGTTGCTGCGTAGGTATCACGTACATACATAC
CGAGGTGTGTTCGCGCCCGAAATGTCGCCTTTTTTTGTTTTTCTTCATCG
CTGACTTGAGAACTGGCACAACGGTCGACGATGGTGCTTTGTGGCTCTGG
TTGCCCTCAGGCGCTGACGCTGGCGGCGAGAGGAGGCGATTGGAGGGCCG
CGAACCCTTGCTGTGGCGTCACCCTGCCGCAGCTCGAGCTGCTCCTCTGT
CTACCGACGTTCTTGTTCAGCCTCGTGAGGTGAGTGAGCAAGCTCCTCGT
CAGGAGCGTGTCGAGGTTCAAACAACAATAACAAGCTTGACAAGTGCCGT
TCTAGTTTTTGGGATTCATGTACTACAGCAGTACTTACGGCTATGGTTAA
TTAGAGATTTTAGAAGAGAAAACCGTATTTAAGCAGTGATACGTTGTTGG
CTTGTCCCGCCCTCTCTTCTACTGTAGTCACTACCGTTAGCCATGCGCCT
GACCCTGTTTTTGGGCCAAATTTCTGTCCAGCGGAGGTTCTTTCGAACAG
CCCATATTGCTGAAATTTTTATTTCATAGCCAATCAATCCCCGCATTTTT
GGCAGCCACGTCAGTTTGCCAAACGAAAAGACTCAACATCGGCTGTGATG
TGTCCTGTTTTTTTTTTTGAGTTGACGACGAAATGGGATTGCTGCAGCCG
CCCCGATTCCCACCCGGCTGTGGGGCTGCAGGGACATTGCATAGAGAGCA
GAGCAGTCACCGCTACTCATGGCGCCGAAACGGTCGCATAAGCTGCAGTA
GCACCGGCGGCAGAGCCGTTGCGCCGGGGCACAATTTCAGAGATGAATAG
GAAAAAAACACCGATCGATTGGAAGAGCGGGTAGGGGGTAGGGTGTGATT
TTTGTCCAACAACATGGTACAAAAGCAACCGAGCCGCCGACGCCCTTGCT
ACCCCTCTGTGGGGTTCAAGAGACAATGCGAGCAAAGTAAGACAATCAGT
GCTACTCATGGTGCAGGAACGATAGTAACAGCTGCAGTAGCGCCGGCGGC
AGAGCCGTTGCGCCCGGGCACAAATGTCAGAGATGAGCGGAAAAACAACA
CCCCCCGATGGGAAAGAGCAGGTAAGGTCTGATTTTTTCAATATGGTACA
GAAAAGGAACTGAAGCTGCCGCCACCCTTCCCAACCCTACACGGGGTTGA
AGAGACACTGCGAGGAAAGCAGGGCACCCACTGCTACTCATGGCGCAGGA
ACGGTAGCAAGAGCTGCACTGTGGCGCCGGTGGTGGAGCCAAGCAATATC
GCCCAAGAGTCTTGATGAGAAAAAAAAAAAAGAACGATGAAAATATCAAT
CCCGCACAAAAGTTGAGCTTTTATCCACCGTCGCTCCTGCTTCGCCCTCG
CTTCCACCCCCCAGGCAGACCACCCCCTCGCACCCTCCCCCCTAGCAGTG
CTCCCTCCAGAGCGCGCTCGCTAGGTTCTCGCCCCGTAGACGGCCGTGGG
CCTCCGCGCCCTTGATCCGCCCGTCGCTACCAAATCGGCTGGTTGTGGGC
ACCAGATTTTTTTGCTTGACAGCAGCGGGATTTTATTATGTTGACCCGTG
CATCACCTGGACATACCCCATGTTAGGATTTGCACTGAGAGACGTCTGCG
CAGCGGATTCTGGAGCGGTTTCTTGTATCACCTCCGTGAAAACGGTAGCT
ATGTTTTGGTCGATGGTGATTTTCGCAAAAGCTCCACACCCTCGCGGCCG
CTGTGAATTTGGCCGAAAAATACTTGATTTTTGAGGGTTTGACGGGATAG
AATCCGCCGATTGAAAAACTGACCGACAATAACACGCGTACATATGTTCA
CATGTATGTACTGAACCGCAAGAGCCAGTTCGTTGATGGCATCGAGTATT
CCACGTCCTCCTCTCCTTGTGTAATATCAAGTCATAACAAGGTTTGGCGT
CGTCAACCGGACAAGCGGAAAAACTTTGTTTTGGCCAGAGAAAGCCGAAT
AGCCGTGCCACGCGCATACAACATTTTGGGGGGTCAGACGCAGGGCTAAC
CGTACCGCTCTTGCCAGTATTATCTGCAGTTCCCTGTTTACGAGAGTGCT
TGCTACACTGCCATCACCCGCGTTTGTTCTGGACTGGGGCGTAGTTTACA
TGACAAGCAGCGCAGCGAGTAGTTCCGTTGTTCGTCGATTTCAGACGATT
CAATCGGATCTCGATGGAAGTCCTGTGGTCCTTAGCTGCTCTGCCGGTGA
CGGAACGTTGTTCATCTCAAGAGTCGTCTCATCGATCACTGTAAGATGGA
CGCTTCGAAGTTGCATTATTCACCTCGAGACTATGGTGAGTCTAATGTTG
CGTGTTCTTGCTCACACGTACTCAAAGTAACCCATAAACTAGCTCGTGGC
CACAAGCTAAAGATGCGTGTGCGTGTGACGGTGGCTCATGCCGTGTCCTC
CCACGGAGTCAACACACAGCTGTGGCCAATCGCTGTCGGCCCATAGAACA
CCGGCACCGGGTTGTCATCTCCCGTTAACTCTCTCTCCGCCGCCGCCGCC
GCCGCATTTCCTCCCCATTCCAATCCTGACCAATGTTGCAATTGTTCTCC
CGGCTGCGTCGTTGTGTGGAGACAGTCGGCTGCTTCTCCGGTTCCCTCCA
ATGCTCGCACCCGCGATGCAGACAGATTTGGCGGACGGGCGGGAAACGAG
CGTGGCGTGGACACTGGAAGAGATTGTCCGCATAGGTTTGTTCGCGTTTC
TCTCCTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18087:354..3514+

>mRNA_Ecto-sp13_S_contig18087.5562.1 ID=mRNA_Ecto-sp13_S_contig18087.5562.1|Name=mRNA_Ecto-sp13_S_contig18087.5562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18087:354..3514+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTACACGCACGGTGTTGTCATCTTCAACACCGTGCATGCTGCCGCGGC
CCTGGCGGGGGGGGCGCTGCGAGACCTTGTGCGGGATCGACACGCCCGGC
TGCTGTGGGCAGCCATGATCCGTGAGGGCTTGCAGGCGCTGACGCTGGCG
GCGAGAGGAGGCGATTGGAGGGCCGCGAACCCTTGCTGTGGCGTCACCCT
GCCGCAGCTCGAGCTGCTCCTCTGTCTACCGACGTTCTTGTTCAGCCTCG
TGAGTCGGCTGCTTCTCCGGTTCCCTCCAATGCTCGCACCCGCGATGCAG
ACAGATTTGGCGGACGGGCGGGAAACGAGCGTGGCGTGGACACTGGAAGA
GATTGTCCGCATAGGTTTGTTCGCGTTTCTCTCCTGTTGA
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