mRNA_Ecto-sp13_S_contig18085.5561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18085.5561.1
Unique NamemRNA_Ecto-sp13_S_contig18085.5561.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.970e-79
Identity = 136/141 (96.45%), Postives = 140/141 (99.29%), Query Frame = 1 
Query:    1 GEGVGEEESDGEDSEGLCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLEDGEGPDLMDIEVHMNTIDPSQATSAGSAPRTRGGAKRSRAGTSTSPSQHPPAASSG 423
            GEGVG+EESDGEDSEGLCLPGTEQTGRWTKAEHELFL+ALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLEDGEGPDLMDIEVHMNTIDPSQAT+AGSAPRTRGGAKRSRAGTSTSPSQHPPAA +G
Sbjct:  724 GEGVGDEESDGEDSEGLCLPGTEQTGRWTKAEHELFLRALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLEDGEGPDLMDIEVHMNTIDPSQATNAGSAPRTRGGAKRSRAGTSTSPSQHPPAAGTG 864
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: A0A6H5K5H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H7_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 5.560e-48
Identity = 99/128 (77.34%), Postives = 99/128 (77.34%), Query Frame = 1 
Query:   31 GEDSEGLCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLEDGEGPDLMDIEVHMNTIDPSQATSAGSAPRTRGGAKRSRAGTSTSPSQHPPAA 414
            GEDSEGLCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAA                            ATSAGSAPRTRGGAKRSRAGTST PSQHPPAA
Sbjct:  212 GEDSEGLCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAA----------------------------ATSAGSAPRTRGGAKRSRAGTSTXPSQHPPAA 311
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: A0A835YHT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.780e-29
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   43 EGLCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLED 258
            +G+C PGTEQTGRWTK EH+LFLKAL  YGKEWKRVA MV TRTVVQTRTHAQKYFQKL K + G    L+D
Sbjct:   19 QGVCAPGTEQTGRWTKGEHDLFLKALGVYGKEWKRVAAMVGTRTVVQTRTHAQKYFQKLQKTSGGEMECLDD 90
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: A0A7S3HM63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM63_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.590e-22
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   31 GEDSEGLCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKA 228
            G+D  G    G E TGRWT+ EHELFL+ALKKYGKEWK+VA MV+TRTVVQTRTHAQKYFQKLTK+
Sbjct:    4 GDDEPGTVPSGHESTGRWTRPEHELFLQALKKYGKEWKKVAGMVKTRTVVQTRTHAQKYFQKLTKS 69
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: D8LE34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE34_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.310e-21
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:   25 SDGEDSEGLCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLEDGEGPDLMD 282
            SD  D+EG+C PG E TGRWT  EH LFL+ L+ +GK WK++A +++TRTVVQ RTHAQKYFQKL+KA A G   L+       MD
Sbjct:   15 SDNLDNEGVCQPGNENTGRWTSDEHRLFLRGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASGTSHLDPATLMSTMD 100
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: W7TIJ3_9STRA (SANT/Myb domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIJ3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.160e-21
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   49 LCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLED 258
            +C PG E TGRW++ EH+ F+  LKK+GKEWKRVA  V TRTVVQTRTHAQKYFQKL K  A G  SLED
Sbjct:   53 VCAPGAEHTGRWSRLEHDRFVDGLKKWGKEWKRVAGEVGTRTVVQTRTHAQKYFQKLQKHMANGA-SLED 121
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: A0A4D9CLC8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLC8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.320e-20
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   49 LCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLED 258
            +C PG E TGRW++ EH+ F+  LKK+GKEWKRVA  V TRTVVQTRTHAQKYFQKL K  A G  SLED
Sbjct:  219 VCAPGAEHTGRWSRLEHDRFVDGLKKWGKEWKRVAGEVGTRTVVQTRTHAQKYFQKLQKQMANGA-SLED 287
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: A0A836C952_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C952_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.300e-19
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   67 EQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTK 225
            E TGRWTKAEH+LF+KAL  YG+EW+ +A MV TRTVVQTRTHAQKYFQKL +
Sbjct:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 53
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: A0A1Z5JSY0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSY0_FISSO)

HSP 1 Score: 93.6 bits (231), Expect = 3.500e-19
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:   61 GTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAGGG 243
            G E TGRWTKAEHE FL  LK YGKEWK+VA  V+TRTVVQTRTHAQKYFQKL K A   G
Sbjct:  117 GKEHTGRWTKAEHEAFLAGLKMYGKEWKKVAARVKTRTVVQTRTHAQKYFQKLHKTAEDSG 177
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BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Match: A0A448YY97_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY97_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.530e-19
Identity = 46/63 (73.02%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   49 LCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKLTKAAAG 237
            L   G EQTGRWTK EHE FL  +K YGKEWK+VA  V+TRTVVQTRTHAQKYFQKL KA  G
Sbjct:   99 LVETGQEQTGRWTKDEHEAFLIGIKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLAKANEG 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18085.5561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG60_ECTSI1.970e-7996.45Histone deactylase of possible bacterial origin wi... [more]
A0A6H5K5H7_9PHAE5.560e-4877.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHT8_9STRA7.780e-2975.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HM63_9STRA1.590e-2275.76Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
D8LE34_ECTSI2.310e-2156.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TIJ3_9STRA5.160e-2168.57SANT/Myb domain protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CLC8_9STRA5.320e-2068.57Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836C952_9STRA1.300e-1975.47Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A1Z5JSY0_FISSO3.500e-1975.41Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448YY97_9STRA6.530e-1973.02Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18085contigEcto-sp13_S_contig18085:727..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score270.0
Seed ortholog evalue7e-70
Seed eggNOG ortholog2880.D8LG60
Model size481
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
Cds size480
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462933.911554-CDS-Ecto-sp13_S_contig18085:726..8401681462933.911554-CDS-Ecto-sp13_S_contig18085:726..840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18085 727..840 +
1681462933.9208283-CDS-Ecto-sp13_S_contig18085:1665..17851681462933.9208283-CDS-Ecto-sp13_S_contig18085:1665..1785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18085 1666..1785 +
1681462933.9287405-CDS-Ecto-sp13_S_contig18085:2256..23401681462933.9287405-CDS-Ecto-sp13_S_contig18085:2256..2340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18085 2257..2340 +
1681462933.936737-CDS-Ecto-sp13_S_contig18085:2875..30371681462933.936737-CDS-Ecto-sp13_S_contig18085:2875..3037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18085 2876..3037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18085.5561.1prot_Ecto-sp13_S_contig18085.5561.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18085 727..3037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18085.5561.1

>prot_Ecto-sp13_S_contig18085.5561.1 ID=prot_Ecto-sp13_S_contig18085.5561.1|Name=mRNA_Ecto-sp13_S_contig18085.5561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
GEGVGEEESDGEDSEGLCLPGTEQTGRWTKAEHELFLKALKKYGKEWKRV
ACMVRTRTVVQTRTHAQKYFQKLTKAAAGGGISLEDGEGPDLMDIEVHMN
TIDPSQATSAGSAPRTRGGAKRSRAGTSTSPSQHPPAASSGSATSGAGAS
GSATSTVVVM
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mRNA from alignment at Ecto-sp13_S_contig18085:727..3037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18085.5561.1 ID=mRNA_Ecto-sp13_S_contig18085.5561.1|Name=mRNA_Ecto-sp13_S_contig18085.5561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18085:727..3037+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGAGGGTGTCGGCGAAGAGGAGTCTGACGGGGAGGACAGCGAGGGGCT
GTGCCTCCCGGGCACGGAGCAAACGGGGCGTTGGACCAAGGCCGAGCACG
AGCTGTTTCTCAAGGTGAGCGTGACACTCGGGATGCCTATGTACTGCTGT
ATGACAGCGATGTGGCAAGGAGCCGAAGTGCAACTAGCTGTTGTGTAGGT
TAGCTTCTCAGAGTAAAGGCTCGGGATGCTTGTGTACTGTACGGCAGCGG
TGGGACAAGGAGTAGAATTGCAACTAAATATTCGTACAACTGCTCTGTAA
GGACCTTGGGTTGTCTGTCGCGGTTGATGTGTTATTTCTTGTATATTTTC
TACACTGCCCCCCCCCACCCCATTTCACCGTCAGCATGGGAAAGGACCCT
GAGGCAGAGCTGGCTCACTACTGTGTGTGTATTTGTTGTCGTGGGCTTAT
GAAGCCTTCCTTCGTCTGCCGGTCGGCATCATGGCTCGGCTATCGCTATC
TTTTTAGGCGCTATTACTGTTTTACCCGCCCCCGCCCCCCCCCCCTCGTG
ACCGACCTCCCATTCGACCTCGGTGAATCGGGCTGGATTTATGTTGTGTC
GGTCGCTTTAGGGTTTCCCATTTGACAGGATGGACATGCCTGTGTTCGGG
AAGGCCACAAGAGTATTTGCTCTTGCCTGTTGCTCTGCATAGCTCTGTGA
CTGTCTGCTCTTTGCTTCCCGCCAAGTTGCGGAAACATTCTCCTTGACGA
GGGTATGAAAGGTTTTGGTTGCGCTGTTGAAGACCAATGCTGTCTTCCGA
AACAGGCAAGATTTGTATCTCTTCCTCCCCCCCCTTAAACCCAACGCTAC
TCATGTGTCCCCCTACCCCATTAATCAAGAAAACTCACGCGTGTGTGCCC
CCTTCAATGGAACGCGAAAATAATCGGAAAAACCGGCAGGCCCTCAAGAA
GTACGGGAAGGAGTGGAAGAGGGTGGCGTGCATGGTGCGAACGCGCACGG
TGGTACAGACCCGCACGCACGCGCAGAAGTACTTCCAGAAGCTCACCAAG
GCTGCCGCGGTAAGAGGAAGAACAACAGGAAGGACGTTCGTTGCTTTGTT
GTGCTGCGAGCATCTAGACATGCAACTCGTTGTGTGAATGTGTGTGCAAC
CGTAGTTTGGAGGTACAGCTATTAGTTTCCCCGCTGTCGCGCGGGACGAA
GCAGCCCCAGGAGAGCGTTACATTACACGGGATTTTTGTTCTCGAGTTGC
GTGGTTTTTTGCAATGCGTGCTGGTTGCTTGCTCTCGCTTGAAGTTTGCG
TGGGGGTAGTAATGCTTTCCTTCCTCCGCTTTAGACCATTGCGGTACTAG
CTATTTTTTCTATCGTGGCAAGACAATAGCAACTCGTCCACGTTCCAGCA
AAGCACCACCTTTGTCAAAAATGATGGTGTTGCGTTCTGCACTGTCTTGA
CTGACTGGCTGTTGCTACCTGCCTTCCTTTCTTCCTTCCCGCGACCCCCC
CTCCCCCCGGCATGTTTTCTCATTTTGCAGGGAGGCGGTATATCTCTGGA
AGACGGGGAGGGGCCCGACCTGATGGACATCGAGGTCCACATGAACACGA
TTGACCCGTCCCAGGTTAGTTACAAGGGCAGCGTATTGTAGTTCGGAGGC
ATTAAGGGTACACAGCAGCAGCTCATTCCCCCCCCCCCCGGCATGAGACG
TTTCTTGCGCGGCATGCGGCACACAGCAGCTCGAGTTCCCGTGCATGTCT
TTTTCCGCGGTACTGCTATACTACAGCAGAAGGCCGTGGCGTTATGGTGC
CCCACCCACACACGGTTGCACTGTAATTTTTCGCTTTGATCCGTCACCAC
GCTCGTTGCCAAGATTTGATGGACAGGCAGCCTTCTCGATAGTTGTAAGC
TTGATCTTGGTTTTAGGGGCGCTACGGGGTGGGGTCGGGAGTTAGGGATA
GGGATCGGGATACCAAACCCCGTCTCTAGTTCATCGACTGATACTCAATC
CTCGCGAGGGCGGTCCAGCTCTGAACCAAATTTTCGCCCCACTTTTATTT
TTTTATTTTTTATTTTTCAATCGACAAAAAAAGTCGACTTGAAATTTTCT
TCTGTTCGCTGAAGTTTTTTTTTTACACTTATTTATTGTCATCAAACAGG
CCACCTCTGCCGGCTCGGCGCCGCGCACGCGCGGGGGAGCCAAGCGGTCT
CGCGCCGGGACGTCGACGTCCCCTTCGCAACACCCGCCCGCCGCTTCTTC
CGGCTCGGCGACTTCGGGGGCGGGTGCTTCGGGTTCGGCTACGTCTACGG
TGGTGGTGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18085:727..3037+

>mRNA_Ecto-sp13_S_contig18085.5561.1 ID=mRNA_Ecto-sp13_S_contig18085.5561.1|Name=mRNA_Ecto-sp13_S_contig18085.5561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18085:727..3037+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGAGGGTGTCGGCGAAGAGGAGTCTGACGGGGAGGACAGCGAGGGGCT
GTGCCTCCCGGGCACGGAGCAAACGGGGCGTTGGACCAAGGCCGAGCACG
AGCTGTTTCTCAAGGCCCTCAAGAAGTACGGGAAGGAGTGGAAGAGGGTG
GCGTGCATGGTGCGAACGCGCACGGTGGTACAGACCCGCACGCACGCGCA
GAAGTACTTCCAGAAGCTCACCAAGGCTGCCGCGGGAGGCGGTATATCTC
TGGAAGACGGGGAGGGGCCCGACCTGATGGACATCGAGGTCCACATGAAC
ACGATTGACCCGTCCCAGGCCACCTCTGCCGGCTCGGCGCCGCGCACGCG
CGGGGGAGCCAAGCGGTCTCGCGCCGGGACGTCGACGTCCCCTTCGCAAC
ACCCGCCCGCCGCTTCTTCCGGCTCGGCGACTTCGGGGGCGGGTGCTTCG
GGTTCGGCTACGTCTACGGTGGTGGTGATG
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