mRNA_Ecto-sp13_S_contig18085.5560.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18085.5560.1
Unique NamemRNA_Ecto-sp13_S_contig18085.5560.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18085.5560.1 vs. uniprot
Match: A0A6H5K5H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.240e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 QDAAKDSSRATLGQLAAKVQAEEKSRRTRAGMEDGVRNGDD 123
            QDAAKDSSRATLGQLAAKVQAEEKSRRTRAG+ DGVR+GDD
Sbjct:   75 QDAAKDSSRATLGQLAAKVQAEEKSRRTRAGVGDGVRDGDD 115
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BLAST of mRNA_Ecto-sp13_S_contig18085.5560.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.080e-10
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QDAAKDSSRATLGQLAAKVQAEEKSRRTRAGMEDGVRNGD 120
            QDAAKDSSRATLGQLAAKVQAEEKSRRTRAG+ DGVR+GD
Sbjct:  555 QDAAKDSSRATLGQLAAKVQAEEKSRRTRAGVGDGVRDGD 594
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18085.5560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5H7_9PHAE2.240e-1192.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG60_ECTSI1.080e-1092.50Histone deactylase of possible bacterial origin wi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18085contigEcto-sp13_S_contig18085:346..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score66.2
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog2880.D8LG60
Model size203
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
Cds size201
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462933.877984-CDS-Ecto-sp13_S_contig18085:345..5461681462933.877984-CDS-Ecto-sp13_S_contig18085:345..546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18085 346..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18085.5560.1prot_Ecto-sp13_S_contig18085.5560.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18085 346..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18085.5560.1

>prot_Ecto-sp13_S_contig18085.5560.1 ID=prot_Ecto-sp13_S_contig18085.5560.1|Name=mRNA_Ecto-sp13_S_contig18085.5560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
QDAAKDSSRATLGQLAAKVQAEEKSRRTRAGMEDGVRNGDDNSTGGGGGG
DAGSDTNGEADSVAGGA
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mRNA from alignment at Ecto-sp13_S_contig18085:346..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18085.5560.1 ID=mRNA_Ecto-sp13_S_contig18085.5560.1|Name=mRNA_Ecto-sp13_S_contig18085.5560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18085:346..548+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGACGCGGCGAAAGACTCGAGCCGCGCCACGCTCGGCCAGCTCGCCGC
CAAGGTGCAGGCGGAAGAGAAGAGTCGCCGCACCCGCGCCGGCATGGAAG
ACGGCGTCAGGAACGGGGACGACAACTCTACCGGCGGAGGCGGCGGAGGC
GACGCCGGGAGCGATACCAACGGCGAAGCCGACAGCGTGGCGGGTGGCGC
CGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18085:346..548+

>mRNA_Ecto-sp13_S_contig18085.5560.1 ID=mRNA_Ecto-sp13_S_contig18085.5560.1|Name=mRNA_Ecto-sp13_S_contig18085.5560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18085:346..548+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGACGCGGCGAAAGACTCGAGCCGCGCCACGCTCGGCCAGCTCGCCGC
CAAGGTGCAGGCGGAAGAGAAGAGTCGCCGCACCCGCGCCGGCATGGAAG
ACGGCGTCAGGAACGGGGACGACAACTCTACCGGCGGAGGCGGCGGAGGC
GACGCCGGGAGCGATACCAACGGCGAAGCCGACAGCGTGGCGGGTGGCGC
C
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