mRNA_Ecto-sp13_S_contig18075.5557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18075.5557.1
Unique NamemRNA_Ecto-sp13_S_contig18075.5557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18075.5557.1 vs. uniprot
Match: D8LS51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS51_ECTSI)

HSP 1 Score: 572 bits (1475), Expect = 1.500e-201
Identity = 342/433 (78.98%), Postives = 350/433 (80.83%), Query Frame = 1 
Query:   49 MAVFRLYGRRDAYDALRNLLAKTIQQDTPAFEDMSPSTSRFCDLPMCASHLRKLLKMRAPRPADGSXXXXXXXXXXXXXXXXXXNDSSGSYPVMSAAHGGVXXXXXXXXXXAPRQRSEGDFLVPPSTPPFRDRGQQVEQLPRRRYSHGVGTAVADVRPGLPLPAAGWSYLDYNKGAVSRPPSASAXXXXXXXXRTAPHEASRSSFQRPPLPPFGALPPLPPPSQPXXXXXXXAEGLSGAPVPAPAASSYELSAATAYGGATAVGSAAAPASELFDTVGFEEAARRDQTAAA-----APVWGTVSPAWGGGRFQSPAAGEQLRRGXXXXXXXXXXXXXXXXXXXXXPWELSTHGGEGQHGRDGRGLAPGAPPPSSAAHVTTSGAELSAAHGQKNVDHQSAITAADLQSVSHAVAGADGDTRSSANAGRPQLPDL 1332
            MAVFRLYGRRDAYDALR+LLAKTIQQDTPAFEDMSPSTSRFCDLPMCASHLRKLLKMRAPR ADGS                  NDS GSYPV+S AHGGV    X     APRQ SEGDFLVPPS PPFRDRGQQVEQL RRRYS GVGTAVADVRPGLPLPAAGWSYLD+NKGAVSRP SASA        RTAPHEAS SSF   P PPFGALPPLPPPSQP       AEGL G P PAPAASSYEL AATAYGGA AVGSAAAP+SELFDTVGFEEAARRDQ         AP WGTVS AW GGRFQSPAAGEQLR G XXXXXXXXXXXXXXXX    PW LSTHGG+GQHGRDGRGLAPGAPPPSSAAH TTSGAELSAA GQKNVDHQSAITAADLQSVSHA+AGADGDT SS+N GRP+LPDL
Sbjct:    1 MAVFRLYGRRDAYDALRDLLAKTIQQDTPAFEDMSPSTSRFCDLPMCASHLRKLLKMRAPRSADGSGGGTATTGAGSSGGH---NDSRGSYPVVSVAHGGVGSGAXAGA--APRQHSEGDFLVPPSAPPFRDRGQQVEQLTRRRYSQGVGTAVADVRPGLPLPAAGWSYLDHNKGAVSRPASASASTSGAP--RTAPHEASGSSFHGAPPPPFGALPPLPPPSQPRGG----AEGLCGPPGPAPAASSYELGAATAYGGANAVGSAAAPSSELFDTVGFEEAARRDQXXXXXXXXXAPAWGTVSQAWRGGRFQSPAAGEQLRGGGXXXXXXXXXXXXXXXX----PWGLSTHGGKGQHGRDGRGLAPGAPPPSSAAHATTSGAELSAALGQKNVDHQSAITAADLQSVSHAMAGADGDTSSSSNTGRPRLPDL 418
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BLAST of mRNA_Ecto-sp13_S_contig18075.5557.1 vs. uniprot
Match: A0A6H5KGK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK8_9PHAE)

HSP 1 Score: 536 bits (1382), Expect = 1.970e-187
Identity = 350/430 (81.40%), Postives = 360/430 (83.72%), Query Frame = 1 
Query:   49 MAVFRLYGRRDAYDALRNLLAKTIQQDTPAFEDMSPSTSRFCDLPMCASHLRKLLKMRAPRPADGSXXXXXXXXXXXXXXXXXXNDSSGSYPVMSAAHGGVXXXXXXXXXXAPRQRSEGDFLVPPSTPPFRDRGQQVEQLPRRRYSHGVGTAVADVRPGLPLPAAGWSYLDYNKGAVSRPPSASAXXXXXXXX--RTAPHEASRSSFQRPPLPPFGALPPLPPPSQPXXXXXXXAEGLSGAPVPAPAASSYELSAATAYGGATAVGSAAAPASELFDTVGFEEAARRDQTAAAAPVWGTVSPAWGGGRFQSPAAGEQLRRGXXXXXXXXXXXXXXXXXXXXXPWELSTHGGEGQHGRDGRGLAPGAPPPSSAAHVTTSGAELSAAHGQKNVDHQSAITAADLQSVSHAVAGADGDTRSSANAGRPQLPDL 1332
            MAVFRLYGRRDAYDALR+LLAKTIQQDTPAFED+SPSTSRFC+LPMCASHLRKLLKMRAP PADG XXXXXXXXXXXX      N S GSYPVMSAAHGGV  XXXXXX  APRQRSEGDFLVPP  PPFRDRGQQVEQL RRRYS GVGTAVADVRPGLPLPAAGWSYLDYN G+VSRPPSAS XXXXXXXX  RTA H AS SSF RPP   FGALP LP     XXXXXXX             ASS EL A+TAYGGATAVGSAAAP SELFDTVGFEE ARRDQTAAAAP WGTVSPAW GGRFQSPAAGEQLRRG  XXXXXXXXX          PW LS+HGG+GQHGR+GRGLA GAPPPSSAAHVTT+GAELSAAHGQK VDHQSAITAADLQSVSHA+AGADGDT SSANAGRPQLPDL
Sbjct:    1 MAVFRLYGRRDAYDALRDLLAKTIQQDTPAFEDISPSTSRFCNLPMCASHLRKLLKMRAPCPADGXXXXXXXXXXXXXSSGGH-NGSRGSYPVMSAAHGGVGSXXXXXX--APRQRSEGDFLVPPPAPPFRDRGQQVEQLTRRRYSQGVGTAVADVRPGLPLPAAGWSYLDYNTGSVSRPPSASXXXXXXXXXXXRTASHGASGSSFYRPPXXXFGALPLLPAXXXXXXXXXXXXXXXXXXXXXXXXASSCELGASTAYGGATAVGSAAAPTSELFDTVGFEELARRDQTAAAAPSWGTVSPAWRGGRFQSPAAGEQLRRGGDXXXXXXXXX----------PWGLSSHGGKGQHGRNGRGLASGAPPPSSAAHVTTNGAELSAAHGQKIVDHQSAITAADLQSVSHAMAGADGDTSSSANAGRPQLPDL 417
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18075.5557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS51_ECTSI1.500e-20178.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGK8_9PHAE1.970e-18781.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18075contigEcto-sp13_S_contig18075:1048..2382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1335
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004800.1
Cds size1335
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462933.735177-CDS-Ecto-sp13_S_contig18075:1047..23821681462933.735177-CDS-Ecto-sp13_S_contig18075:1047..2382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18075 1048..2382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18075.5557.1prot_Ecto-sp13_S_contig18075.5557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18075 1048..2382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18075.5557.1

>prot_Ecto-sp13_S_contig18075.5557.1 ID=prot_Ecto-sp13_S_contig18075.5557.1|Name=mRNA_Ecto-sp13_S_contig18075.5557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=445bp
CSISIRIYHRHVAHLSMAVFRLYGRRDAYDALRNLLAKTIQQDTPAFEDM
SPSTSRFCDLPMCASHLRKLLKMRAPRPADGSGGGGGSTATTGAGSSGGH
NDSSGSYPVMSAAHGGVGCGDGAGAGAAPRQRSEGDFLVPPSTPPFRDRG
QQVEQLPRRRYSHGVGTAVADVRPGLPLPAAGWSYLDYNKGAVSRPPSAS
ASASASAAPRTAPHEASRSSFQRPPLPPFGALPPLPPPSQPQPQPGGGAE
GLSGAPVPAPAASSYELSAATAYGGATAVGSAAAPASELFDTVGFEEAAR
RDQTAAAAPVWGTVSPAWGGGRFQSPAAGEQLRRGGDAGGGGGGGGGGVG
GGGGGGPWELSTHGGEGQHGRDGRGLAPGAPPPSSAAHVTTSGAELSAAH
GQKNVDHQSAITAADLQSVSHAVAGADGDTRSSANAGRPQLPDL*
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mRNA from alignment at Ecto-sp13_S_contig18075:1048..2382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18075.5557.1 ID=mRNA_Ecto-sp13_S_contig18075.5557.1|Name=mRNA_Ecto-sp13_S_contig18075.5557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1335bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18075:1048..2382- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTCCATCTCAATCAGGATCTATCACCGCCACGTGGCTCATCTGTCCAT
GGCGGTTTTTCGACTGTACGGACGCAGAGACGCTTACGACGCCCTCAGAA
ACCTGCTCGCCAAGACGATCCAGCAGGATACGCCGGCGTTCGAGGACATG
TCGCCGTCGACCTCGCGATTCTGCGACCTCCCCATGTGCGCATCGCACCT
CCGCAAACTCCTCAAGATGCGAGCGCCGCGTCCAGCAGACGGCAGCGGCG
GCGGCGGCGGCAGCACCGCGACGACCGGCGCCGGGAGCAGCGGTGGTCAC
AACGACAGCAGCGGCAGCTACCCCGTTATGAGCGCCGCTCATGGTGGCGT
TGGCTGCGGTGATGGTGCTGGTGCTGGTGCTGCGCCACGCCAACGCAGTG
AAGGCGATTTCTTGGTGCCTCCCTCTACCCCCCCTTTCCGAGATCGAGGC
CAACAAGTAGAACAGCTGCCGAGGAGGAGATATTCCCACGGGGTCGGCAC
CGCCGTCGCCGACGTCCGGCCCGGCTTGCCCCTGCCCGCGGCTGGTTGGA
GCTACCTCGACTACAACAAGGGGGCGGTTTCACGGCCGCCATCGGCATCG
GCATCGGCGTCGGCGTCGGCGGCCCCGCGAACTGCTCCGCACGAAGCGAG
CCGCTCTAGTTTTCAGAGACCACCGCTGCCCCCCTTCGGCGCTCTCCCGC
CGCTGCCGCCACCGTCGCAGCCGCAGCCGCAGCCGGGCGGGGGGGCGGAG
GGGCTTAGCGGCGCGCCCGTTCCGGCCCCCGCTGCTAGCTCGTACGAGCT
TAGCGCGGCGACAGCGTACGGGGGGGCGACTGCGGTCGGGTCTGCCGCTG
CACCCGCAAGCGAGTTGTTCGACACGGTAGGCTTTGAAGAGGCGGCGAGG
AGAGACCAGACGGCGGCGGCGGCGCCTGTCTGGGGGACAGTGTCACCGGC
ATGGGGTGGCGGGAGGTTTCAGAGCCCCGCCGCGGGGGAGCAGCTTCGCA
GGGGCGGTGATGCTGGTGGCGGTGGCGGTGGTGGTGGTGGTGGCGTTGGC
GGTGGTGGTGGCGGCGGGCCGTGGGAGCTGTCGACCCACGGAGGGGAAGG
GCAGCATGGTCGCGATGGCCGTGGCCTTGCCCCTGGTGCCCCGCCCCCCT
CTTCGGCTGCACACGTCACCACCAGCGGCGCAGAGCTCTCCGCCGCGCAC
GGCCAGAAAAATGTTGACCATCAATCCGCCATCACGGCTGCTGATCTGCA
GAGCGTGAGTCACGCCGTGGCCGGCGCGGATGGGGACACTAGGAGTAGTG
CCAACGCCGGTAGACCACAGCTTCCCGATCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18075:1048..2382-

>mRNA_Ecto-sp13_S_contig18075.5557.1 ID=mRNA_Ecto-sp13_S_contig18075.5557.1|Name=mRNA_Ecto-sp13_S_contig18075.5557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1335bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18075:1048..2382- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTCCATCTCAATCAGGATCTATCACCGCCACGTGGCTCATCTGTCCAT
GGCGGTTTTTCGACTGTACGGACGCAGAGACGCTTACGACGCCCTCAGAA
ACCTGCTCGCCAAGACGATCCAGCAGGATACGCCGGCGTTCGAGGACATG
TCGCCGTCGACCTCGCGATTCTGCGACCTCCCCATGTGCGCATCGCACCT
CCGCAAACTCCTCAAGATGCGAGCGCCGCGTCCAGCAGACGGCAGCGGCG
GCGGCGGCGGCAGCACCGCGACGACCGGCGCCGGGAGCAGCGGTGGTCAC
AACGACAGCAGCGGCAGCTACCCCGTTATGAGCGCCGCTCATGGTGGCGT
TGGCTGCGGTGATGGTGCTGGTGCTGGTGCTGCGCCACGCCAACGCAGTG
AAGGCGATTTCTTGGTGCCTCCCTCTACCCCCCCTTTCCGAGATCGAGGC
CAACAAGTAGAACAGCTGCCGAGGAGGAGATATTCCCACGGGGTCGGCAC
CGCCGTCGCCGACGTCCGGCCCGGCTTGCCCCTGCCCGCGGCTGGTTGGA
GCTACCTCGACTACAACAAGGGGGCGGTTTCACGGCCGCCATCGGCATCG
GCATCGGCGTCGGCGTCGGCGGCCCCGCGAACTGCTCCGCACGAAGCGAG
CCGCTCTAGTTTTCAGAGACCACCGCTGCCCCCCTTCGGCGCTCTCCCGC
CGCTGCCGCCACCGTCGCAGCCGCAGCCGCAGCCGGGCGGGGGGGCGGAG
GGGCTTAGCGGCGCGCCCGTTCCGGCCCCCGCTGCTAGCTCGTACGAGCT
TAGCGCGGCGACAGCGTACGGGGGGGCGACTGCGGTCGGGTCTGCCGCTG
CACCCGCAAGCGAGTTGTTCGACACGGTAGGCTTTGAAGAGGCGGCGAGG
AGAGACCAGACGGCGGCGGCGGCGCCTGTCTGGGGGACAGTGTCACCGGC
ATGGGGTGGCGGGAGGTTTCAGAGCCCCGCCGCGGGGGAGCAGCTTCGCA
GGGGCGGTGATGCTGGTGGCGGTGGCGGTGGTGGTGGTGGTGGCGTTGGC
GGTGGTGGTGGCGGCGGGCCGTGGGAGCTGTCGACCCACGGAGGGGAAGG
GCAGCATGGTCGCGATGGCCGTGGCCTTGCCCCTGGTGCCCCGCCCCCCT
CTTCGGCTGCACACGTCACCACCAGCGGCGCAGAGCTCTCCGCCGCGCAC
GGCCAGAAAAATGTTGACCATCAATCCGCCATCACGGCTGCTGATCTGCA
GAGCGTGAGTCACGCCGTGGCCGGCGCGGATGGGGACACTAGGAGTAGTG
CCAACGCCGGTAGACCACAGCTTCCCGATCTGTAG
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