prot_Ecto-sp13_S_contig18066.5552.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18066.5552.1
Unique Nameprot_Ecto-sp13_S_contig18066.5552.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length246
Homology
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: D7FWM8_ECTSI (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM8_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 8.700e-147
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 0
Query:   34 DEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP 245
            DEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSIT+TVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP
Sbjct:   22 DEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP 233          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A836CDG2_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG2_9STRA)

HSP 1 Score: 302 bits (773), Expect = 9.050e-101
Identity = 153/239 (64.02%), Postives = 187/239 (78.24%), Query Frame = 0
Query:    2 AYNRTPLLPPCPSDCLRFRYLVFRADDACVAQDEVSLYSNA-RERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 239
            AY     +PP P      R  V R   +   ++E+SL++N  +ER++WD+L+EFFAI+KT EHLENARIK+AIGRDEYT  CS LI+Q+KDAES L+++G ITNT  FI E+Q+D PYAM+RLVKYGVPATVLHR  DE D I RARQAAETTQCFITAMDALKL+QRAVDEVQPLI D+ DRLNK +GLP  +EG +  R WL+T N +RA+D+L ++Q RQLLHDLD SYSAFFR+L
Sbjct:    7 AYADLQQIPPQP------RQTVLREYSSFGEEEELSLHNNTPKERKKWDQLAEFFAIIKTVEHLENARIKNAIGRDEYTSRCSDLIAQFKDAESTLVSEGHITNTSAFIVEFQMDVPYAMERLVKYGVPATVLHRNHDEHDAISRARQAAETTQCFITAMDALKLDQRAVDEVQPLISDVMDRLNKCEGLPEGFEGVKTMRAWLITFNGLRASDQLDDEQVRQLLHDLDVSYSAFFRFL 239          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A6S9EJI3_HETAK (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EJI3_HETAK)

HSP 1 Score: 249 bits (635), Expect = 7.330e-80
Identity = 127/216 (58.80%), Postives = 162/216 (75.00%), Query Frame = 0
Query:   27 DDACVAQDEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQL-DCPYAMDRLVKYGVPATVLHRQVDERDQIG-RARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 240
            D+  +  ++V LY N RER+++D+L+EF+AI+KTTEHLENAR+ ++I ++EY REC+ LI Q+KD ES L+    IT+T  FI  + L DC  A +RL+ YGVPATV+HR  D +  +  +ARQAAE TQ FITAMDALKLEQRAVDEVQPL+ D+ DRL ++  LP D+  TQK   WL  LN +RAADEL EDQARQLLHDLD +YS FFR+LE
Sbjct:   21 DNDHLMMEDVKLYKNTRERQRYDRLAEFYAIIKTTEHLENARLSNSIDKEEYARECTTLIQQFKDTESVLIRQNYITDTSSFIAAWGLGDCALAAERLLTYGVPATVVHRSGDGQAGLALQARQAAEATQAFITAMDALKLEQRAVDEVQPLVADVMDRLTRLAALPADFAPTQKIEAWLKELNGLRAADELGEDQARQLLHDLDAAYSGFFRFLE 236          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A7S1FP92_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FP92_9STRA)

HSP 1 Score: 214 bits (544), Expect = 2.430e-66
Identity = 107/204 (52.45%), Postives = 150/204 (73.53%), Query Frame = 0
Query:   38 LYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHR-QVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 240
            L+ NA+ERR+ D +++ FAI+K TEHLE A  + ++ + EYT EC  LISQ++  E+AL+ +G+I ++ +FI+EYQ++CP A+DRL++ GVPAT LH+ Q +E      A + AE  Q FITAMDALKL+QRAVDEVQPL+ DL D L +V GLP +++     + WL+ LNAMRA DE+ EDQARQL  +LDT+Y+ F R+L+
Sbjct:   16 LFQNAKERRKLDDMADLFAIIKATEHLEIAYGRDSVTQKEYTTECLKLISQFRSTETALIKNGTIRSSEEFIQEYQMECPRAVDRLLRTGVPATTLHQTQANEGAASNEAVRVAECVQHFITAMDALKLDQRAVDEVQPLLSDLMDSLTRVSGLPANFDPVDMLKRWLIKLNAMRAVDEIDEDQARQLSFELDTAYAGFHRFLK 219          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: W7T9L8_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9L8_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.370e-65
Identity = 115/239 (48.12%), Postives = 161/239 (67.36%), Query Frame = 0
Query:    2 AYNRTPLLPPCPSDCLRFRYLVFRADDACVAQDEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 240
            A  + P  PP      R +Y       A + Q E+ L +NA ERR+++ L++ F+I+K TEHLE A  + AI  D+YT  CS LISQ+K  E+A+LA  ++ +   F+ EY +DCP A++RL++ GVP+TVL+  VD  D  G A + AET Q FITAMD ++LEQRAVDE+QP++ D+   L +V GLP ++ G++K  EWLVTLNAMRA D ++E+QARQLL DLD  YS+F  +L+
Sbjct:    9 AIQQQPSKPP------RGKYESLSPTPASMKQ-EIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVD--DGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A5D6XFV6_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFV6_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.060e-63
Identity = 107/212 (50.47%), Postives = 145/212 (68.40%), Query Frame = 0
Query:   29 ACVAQDEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 239
            A +A  EV L+ + +ERR+++ LS+ FAI+KTTEHLE A ++ AI  DEYT  C+ LISQYK AE+AL   G + N   F+ +Y+LDCP A++RLV+ GVPATV+H     + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L +V GLP D++G  K   WL TLN +RA+DEL +DQARQL  DL+ +YS+F  +L
Sbjct:   20 APLADQEVRLWKDTKERRKFEDLSDLFAIIKTTEHLEAAYVRDAITPDEYTEACTKLISQYKTAENALRLGGHLPNIEAFLAQYRLDCPRALERLVRIGVPATVVHNTTSRKTDSVN----VAQTVQSFITVMDVLKLNIRAVDEIQPLVSEMMASLTQVSGLPPDFDGRAKIEGWLRTLNGLRASDELDDDQARQLSFDLERAYSSFMAFL 227          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A812XGV8_SYMMI (Vps28 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XGV8_SYMMI)

HSP 1 Score: 208 bits (530), Expect = 1.220e-63
Identity = 109/206 (52.91%), Postives = 145/206 (70.39%), Query Frame = 0
Query:   35 EVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 239
            EV L+  + ERR+ ++L++ +AI+K T+ LE A  + AI   EY+  C+ L+SQ+K  ESAL+  G IT+   F++EY +DCP A DRL++ GVPATV+H   D+R D +      AET Q FITAMDALKLEQRAVDEVQPL+ +L   L +V GLP D+EG  K R WL  LN MRA +ELS+++ARQL+ DL+ +YSAF RYL
Sbjct:   59 EVKLFEGSNERRRHEELADLYAIIKVTDSLEAAYSRDAISTSEYSESCTRLLSQFKGTESALITGGMITSAEIFMREYNIDCPRAYDRLIRAGVPATVMHMSHDDRADSVI----VAETVQAFITAMDALKLEQRAVDEVQPLLAELMSALTRVAGLPADFEGLVKMRLWLQKLNQMRAVEELSDEEARQLIFDLEGAYSAFHRYL 260          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A2D4C4W2_PYTIN (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4W2_PYTIN)

HSP 1 Score: 204 bits (519), Expect = 1.830e-62
Identity = 105/212 (49.53%), Postives = 146/212 (68.87%), Query Frame = 0
Query:   29 ACVAQDEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 239
            A  +  EV L+ N +ERR+++ LS+ FAI+KTTEHLE A ++ AI  +EYT  C+ LISQ+K AE+AL   G + +   FI +Y+LDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L +V GLP D++G  K   WL TLN++RA+DEL +DQARQL  DL+ +YS+F  +L
Sbjct:   22 APTSAPEVKLWGNTKERRKFEDLSDLFAIIKTTEHLETAYVRDAITPEEYTETCTKLISQFKTAETALRLGGFLDDIEAFISQYRLDCPRALERLVRIGVPATVVHNSTNRKADSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLCEMMTSLTQVSGLPADFQGRDKMEGWLRTLNSLRASDELDDDQARQLSFDLERAYSSFMAFL 229          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: W2JRS1_PHYPR (Vacuolar protein sorting-associated protein 28 homolog n=23 Tax=Phytophthora TaxID=4783 RepID=W2JRS1_PHYPR)

HSP 1 Score: 199 bits (506), Expect = 1.910e-60
Identity = 102/206 (49.51%), Postives = 142/206 (68.93%), Query Frame = 0
Query:   35 EVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 239
            E+ L+++ ++RR+++ L++ FAI KTTEHLE A ++ AI  +EYT  C+ LISQYK AE+AL   G I +   FI EY+LDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L  V GLP D+ G  K   WL T+N+MRA++EL E+QARQL  DL+ +YS+F  +L
Sbjct:   32 EIKLWADTKDRRKYEDLADLFAIFKTTEHLEAAYVRDAITPEEYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVHNTTNRKTDSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNSMRASEELDEEQARQLSFDLERAYSSFMAFL 233          
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A484ED39_BRELC (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED39_BRELC)

HSP 1 Score: 199 bits (507), Expect = 1.960e-60
Identity = 105/206 (50.97%), Postives = 141/206 (68.45%), Query Frame = 0
Query:   35 EVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 239
            EV L+ + +ERR+++ L++ FAILKTTEHLE A ++ A+  DEYT  C+ LISQ+K AE+AL   G I +  +FI EYQLDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L  V GLP D+    K  +WL T+NAM A+DEL E QARQL  DL+ +YS+F  +L
Sbjct:   44 EVKLWGDTKERRKYEDLADLFAILKTTEHLEAAYVRDAVTPDEYTEACTKLISQFKTAETALRLGGFIESVENFIAEYQLDCPRALERLVRIGVPATVVHNTTNRKTDSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVRGLPADFSKRDKIEDWLRTMNAMGASDELDEVQARQLSFDLERAYSSFMAFL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWM8_ECTSI8.700e-14799.53Vacuolar protein sorting-associated protein 28 hom... [more]
A0A836CDG2_9STRA9.050e-10164.02Vacuolar protein sorting-associated protein 28 hom... [more]
A0A6S9EJI3_HETAK7.330e-8058.80Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7S1FP92_9STRA2.430e-6652.45Vacuolar protein sorting-associated protein 28 hom... [more]
W7T9L8_9STRA2.370e-6548.12Vacuolar protein sorting-associated protein 28 hom... [more]
A0A5D6XFV6_9STRA1.060e-6350.47Vacuolar protein sorting-associated protein 28 hom... [more]
A0A812XGV8_SYMMI1.220e-6352.91Vps28 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A2D4C4W2_PYTIN1.830e-6249.53Vacuolar protein sorting-associated protein 28 hom... [more]
W2JRS1_PHYPR1.910e-6049.51Vacuolar protein sorting-associated protein 28 hom... [more]
A0A484ED39_BRELC1.960e-6050.97Vacuolar protein sorting-associated protein 28 hom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..95
IPR037206VPS28, C-terminal domain superfamilyGENE3D1.20.120.1130coord: 142..241
e-value: 3.4E-35
score: 122.0
IPR037206VPS28, C-terminal domain superfamilySUPERFAMILY140427VPS28 C-terminal domain-likecoord: 146..239
IPR038358VPS28, N-terminal domain superfamilyGENE3D1.20.1440.200coord: 22..126
e-value: 3.3E-22
score: 80.6
IPR007143Vacuolar protein sorting-associated Vps28PIRSFPIRSF017535ESCRT1_Vps28coord: 27..240
e-value: 1.7E-59
score: 198.7
IPR007143Vacuolar protein sorting-associated Vps28PFAMPF03997VPS28coord: 51..239
e-value: 1.3E-59
score: 201.1
IPR007143Vacuolar protein sorting-associated Vps28PANTHERPTHR12937VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28coord: 32..240
IPR017898Vacuolar protein sorting-associated, VPS28, N-terminalPROSITEPS51313VPS28_Ncoord: 25..134
score: 18.601
IPR017899Vacuolar protein sorting-associated, VPS28, C-terminalPROSITEPS51310VPS28_Ccoord: 144..240
score: 38.203
IPR037202ESCRT assembly domainSUPERFAMILY140111Endosomal sorting complex assembly domaincoord: 35..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18066contigEcto-sp13_S_contig18066:684..3396 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18066.5552.1mRNA_Ecto-sp13_S_contig18066.5552.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18066 202..3554 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18066.5552.1 ID=prot_Ecto-sp13_S_contig18066.5552.1|Name=mRNA_Ecto-sp13_S_contig18066.5552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MAYNRTPLLPPCPSDCLRFRYLVFRADDACVAQDEVSLYSNARERRQWDK
LSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADG
SITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAA
ETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKT
REWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037206VPS28_C_sf
IPR038358VPS28_N_sf
IPR007143Vps28
IPR017898VPS28_N
IPR017899VPS28_C
IPR037202ESCRT_assembly_dom