mRNA_Ecto-sp13_S_contig18066.5552.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18066.5552.1
Unique NamemRNA_Ecto-sp13_S_contig18066.5552.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: D7FWM8_ECTSI (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM8_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 2.550e-143
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 3 
Query:  258 DEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP 893
            DEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSIT+TVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP
Sbjct:   22 DEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITSTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP 233
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A836CDG2_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG2_9STRA)

HSP 1 Score: 301 bits (772), Expect = 2.110e-97
Identity = 153/239 (64.02%), Postives = 187/239 (78.24%), Query Frame = 3 
Query:  162 AYNRTPLLPPCPSDCLRFRYLVFRADDACVAQDEVSLYSNA-RERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 875
            AY     +PP P      R  V R   +   ++E+SL++N  +ER++WD+L+EFFAI+KT EHLENARIK+AIGRDEYT  CS LI+Q+KDAES L+++G ITNT  FI E+Q+D PYAM+RLVKYGVPATVLHR  DE D I RARQAAETTQCFITAMDALKL+QRAVDEVQPLI D+ DRLNK +GLP  +EG +  R WL+T N +RA+D+L ++Q RQLLHDLD SYSAFFR+L
Sbjct:    7 AYADLQQIPPQP------RQTVLREYSSFGEEEELSLHNNTPKERKKWDQLAEFFAIIKTVEHLENARIKNAIGRDEYTSRCSDLIAQFKDAESTLVSEGHITNTSAFIVEFQMDVPYAMERLVKYGVPATVLHRNHDEHDAISRARQAAETTQCFITAMDALKLDQRAVDEVQPLISDVMDRLNKCEGLPEGFEGVKTMRAWLITFNGLRASDQLDDEQVRQLLHDLDVSYSAFFRFL 239
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A6S9EJI3_HETAK (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EJI3_HETAK)

HSP 1 Score: 249 bits (635), Expect = 7.720e-77
Identity = 127/216 (58.80%), Postives = 162/216 (75.00%), Query Frame = 3 
Query:  237 DDACVAQDEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQL-DCPYAMDRLVKYGVPATVLHRQVDERDQIG-RARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 878
            D+  +  ++V LY N RER+++D+L+EF+AI+KTTEHLENAR+ ++I ++EY REC+ LI Q+KD ES L+    IT+T  FI  + L DC  A +RL+ YGVPATV+HR  D +  +  +ARQAAE TQ FITAMDALKLEQRAVDEVQPL+ D+ DRL ++  LP D+  TQK   WL  LN +RAADEL EDQARQLLHDLD +YS FFR+LE
Sbjct:   21 DNDHLMMEDVKLYKNTRERQRYDRLAEFYAIIKTTEHLENARLSNSIDKEEYARECTTLIQQFKDTESVLIRQNYITDTSSFIAAWGLGDCALAAERLLTYGVPATVVHRSGDGQAGLALQARQAAEATQAFITAMDALKLEQRAVDEVQPLVADVMDRLTRLAALPADFAPTQKIEAWLKELNGLRAADELGEDQARQLLHDLDAAYSGFFRFLE 236
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A7S1FP92_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FP92_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.690e-63
Identity = 107/204 (52.45%), Postives = 150/204 (73.53%), Query Frame = 3 
Query:  270 LYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHR-QVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 878
            L+ NA+ERR+ D +++ FAI+K TEHLE A  + ++ + EYT EC  LISQ++  E+AL+ +G+I ++ +FI+EYQ++CP A+DRL++ GVPAT LH+ Q +E      A + AE  Q FITAMDALKL+QRAVDEVQPL+ DL D L +V GLP +++     + WL+ LNAMRA DE+ EDQARQL  +LDT+Y+ F R+L+
Sbjct:   16 LFQNAKERRKLDDMADLFAIIKATEHLEIAYGRDSVTQKEYTTECLKLISQFRSTETALIKNGTIRSSEEFIQEYQMECPRAVDRLLRTGVPATTLHQTQANEGAASNEAVRVAECVQHFITAMDALKLDQRAVDEVQPLLSDLMDSLTRVSGLPANFDPVDMLKRWLIKLNAMRAVDEIDEDQARQLSFELDTAYAGFHRFLK 219
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: W7T9L8_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9L8_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.260e-62
Identity = 115/239 (48.12%), Postives = 161/239 (67.36%), Query Frame = 3 
Query:  162 AYNRTPLLPPCPSDCLRFRYLVFRADDACVAQDEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLE 878
            A  + P  PP      R +Y       A + Q E+ L +NA ERR+++ L++ F+I+K TEHLE A  + AI  D+YT  CS LISQ+K  E+A+LA  ++ +   F+ EY +DCP A++RL++ GVP+TVL+  VD  D  G A + AET Q FITAMD ++LEQRAVDE+QP++ D+   L +V GLP ++ G++K  EWLVTLNAMRA D ++E+QARQLL DLD  YS+F  +L+
Sbjct:    9 AIQQQPSKPP------RGKYESLSPTPASMKQ-EIKLINNAAERRKYEDLADLFSIIKATEHLEIAFARDAISEDDYTAACSKLISQFKSTEAAVLAAKTVADARAFMTEYHMDCPRAVERLLRLGVPSTVLNPSVD--DGRGDAIKVAETVQYFITAMDGVRLEQRAVDELQPMLTDIMTSLRRVQGLPAEFLGSKKLEEWLVTLNAMRAMDAITEEQARQLLFDLDQGYSSFHAWLK 238
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A5D6XFV6_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFV6_9STRA)

HSP 1 Score: 207 bits (527), Expect = 6.720e-61
Identity = 107/212 (50.47%), Postives = 145/212 (68.40%), Query Frame = 3 
Query:  243 ACVAQDEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 875
            A +A  EV L+ + +ERR+++ LS+ FAI+KTTEHLE A ++ AI  DEYT  C+ LISQYK AE+AL   G + N   F+ +Y+LDCP A++RLV+ GVPATV+H     + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L +V GLP D++G  K   WL TLN +RA+DEL +DQARQL  DL+ +YS+F  +L
Sbjct:   20 APLADQEVRLWKDTKERRKFEDLSDLFAIIKTTEHLEAAYVRDAITPDEYTEACTKLISQYKTAENALRLGGHLPNIEAFLAQYRLDCPRALERLVRIGVPATVVHNTTSRKTDSVN----VAQTVQSFITVMDVLKLNIRAVDEIQPLVSEMMASLTQVSGLPPDFDGRAKIEGWLRTLNGLRASDELDDDQARQLSFDLERAYSSFMAFL 227
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A812XGV8_SYMMI (Vps28 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XGV8_SYMMI)

HSP 1 Score: 208 bits (530), Expect = 7.830e-61
Identity = 109/206 (52.91%), Postives = 145/206 (70.39%), Query Frame = 3 
Query:  261 EVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 875
            EV L+  + ERR+ ++L++ +AI+K T+ LE A  + AI   EY+  C+ L+SQ+K  ESAL+  G IT+   F++EY +DCP A DRL++ GVPATV+H   D+R D +      AET Q FITAMDALKLEQRAVDEVQPL+ +L   L +V GLP D+EG  K R WL  LN MRA +ELS+++ARQL+ DL+ +YSAF RYL
Sbjct:   59 EVKLFEGSNERRRHEELADLYAIIKVTDSLEAAYSRDAISTSEYSESCTRLLSQFKGTESALITGGMITSAEIFMREYNIDCPRAYDRLIRAGVPATVMHMSHDDRADSVI----VAETVQAFITAMDALKLEQRAVDEVQPLLAELMSALTRVAGLPADFEGLVKMRLWLQKLNQMRAVEELSDEEARQLIFDLEGAYSAFHRYL 260
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A2D4C4W2_PYTIN (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4W2_PYTIN)

HSP 1 Score: 204 bits (519), Expect = 1.110e-59
Identity = 105/212 (49.53%), Postives = 146/212 (68.87%), Query Frame = 3 
Query:  243 ACVAQDEVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 875
            A  +  EV L+ N +ERR+++ LS+ FAI+KTTEHLE A ++ AI  +EYT  C+ LISQ+K AE+AL   G + +   FI +Y+LDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L +V GLP D++G  K   WL TLN++RA+DEL +DQARQL  DL+ +YS+F  +L
Sbjct:   22 APTSAPEVKLWGNTKERRKFEDLSDLFAIIKTTEHLETAYVRDAITPEEYTETCTKLISQFKTAETALRLGGFLDDIEAFISQYRLDCPRALERLVRIGVPATVVHNSTNRKADSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLCEMMTSLTQVSGLPADFQGRDKMEGWLRTLNSLRASDELDDDQARQLSFDLERAYSSFMAFL 229
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BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: W2JRS1_PHYPR (Vacuolar protein sorting-associated protein 28 homolog n=23 Tax=Phytophthora TaxID=4783 RepID=W2JRS1_PHYPR)

HSP 1 Score: 199 bits (506), Expect = 1.070e-57
Identity = 102/206 (49.51%), Postives = 142/206 (68.93%), Query Frame = 3 
Query:  261 EVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 875
            E+ L+++ ++RR+++ L++ FAI KTTEHLE A ++ AI  +EYT  C+ LISQYK AE+AL   G I +   FI EY+LDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L  V GLP D+ G  K   WL T+N+MRA++EL E+QARQL  DL+ +YS+F  +L
Sbjct:   32 EIKLWADTKDRRKYEDLADLFAIFKTTEHLEAAYVRDAITPEEYTEACTKLISQYKTAETALRLGGFIDSVESFIAEYRLDCPRALERLVRIGVPATVVHNTTNRKTDSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVSGLPPDFAGRDKIEGWLRTMNSMRASEELDEEQARQLSFDLERAYSSFMAFL 233
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Match: A0A484ED39_BRELC (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED39_BRELC)

HSP 1 Score: 199 bits (507), Expect = 1.100e-57
Identity = 105/206 (50.97%), Postives = 141/206 (68.45%), Query Frame = 3 
Query:  261 EVSLYSNARERRQWDKLSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADGSITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDER-DQIGRARQAAETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYL 875
            EV L+ + +ERR+++ L++ FAILKTTEHLE A ++ A+  DEYT  C+ LISQ+K AE+AL   G I +  +FI EYQLDCP A++RLV+ GVPATV+H   + + D +      A+T Q FIT MD LKL  RAVDE+QPL+ ++   L  V GLP D+    K  +WL T+NAM A+DEL E QARQL  DL+ +YS+F  +L
Sbjct:   44 EVKLWGDTKERRKYEDLADLFAILKTTEHLEAAYVRDAVTPDEYTEACTKLISQFKTAETALRLGGFIESVENFIAEYQLDCPRALERLVRIGVPATVVHNTTNRKTDSVN----VAQTVQNFITLMDVLKLNIRAVDEIQPLLSEMMSSLTMVRGLPADFSKRDKIEDWLRTMNAMGASDELDEVQARQLSFDLERAYSSFMAFL 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18066.5552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWM8_ECTSI2.550e-14399.53Vacuolar protein sorting-associated protein 28 hom... [more]
A0A836CDG2_9STRA2.110e-9764.02Vacuolar protein sorting-associated protein 28 hom... [more]
A0A6S9EJI3_HETAK7.720e-7758.80Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7S1FP92_9STRA1.690e-6352.45Vacuolar protein sorting-associated protein 28 hom... [more]
W7T9L8_9STRA2.260e-6248.12Vacuolar protein sorting-associated protein 28 hom... [more]
A0A5D6XFV6_9STRA6.720e-6150.47Vacuolar protein sorting-associated protein 28 hom... [more]
A0A812XGV8_SYMMI7.830e-6152.91Vps28 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A2D4C4W2_PYTIN1.110e-5949.53Vacuolar protein sorting-associated protein 28 hom... [more]
W2JRS1_PHYPR1.070e-5749.51Vacuolar protein sorting-associated protein 28 hom... [more]
A0A484ED39_BRELC1.100e-5750.97Vacuolar protein sorting-associated protein 28 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18066contigEcto-sp13_S_contig18066:202..3554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score421.8
Seed ortholog evalue2.2e-115
Seed eggNOG ortholog2880.D7FWM8
Preferred nameVPS28
Model size1378
KEGG koko:K06002,ko:K12184
KEGG Pathwayko04144,ko04974,map04144,map04974
KEGG ModuleM00409
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000813,GO:0001654,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006914,GO:0006996,GO:0007010,GO:0007032,GO:0007034,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008593,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010604,GO:0010605,GO:0010646,GO:0010648,GO:0010796,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0019058,GO:0019068,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022008,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030029,GO:0030036,GO:0030100,GO:0030154,GO:0030163,GO:0030182,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032535,GO:0032801,GO:0032879,GO:0032880,GO:0032984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040008,GO:0042058,GO:0042059,GO:0042176,GO:0042221,GO:0042493,GO:0042551,GO:0042886,GO:0043112,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044085,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045324,GO:0045732,GO:0045807,GO:0045926,GO:0046618,GO:0046755,GO:0046907,GO:0048232,GO:0048468,GO:0048469,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051036,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0060255,GO:0060341,GO:0060627,GO:0061919,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070925,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090066,GO:0090087,GO:0090150,GO:0097352,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:1901184,GO:1901185,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1903320,GO:1903321,GO:1903827,GO:1903829,GO:1904669,GO:1904951,GO:2000395,GO:2000397
Exons5
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG3284@1,KOG3284@2759
Ec32 ortholog descriptionVacuolar protein sorting-associated, VPS28
Ec32 orthologEc-06_001250.1
EC3.4.23.1
Cds size738
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18066.5552.1prot_Ecto-sp13_S_contig18066.5552.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18066 684..3396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462933.278422-UTR-Ecto-sp13_S_contig18066:201..6831681462933.278422-UTR-Ecto-sp13_S_contig18066:201..683Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18066 202..683 -
1681462933.3482132-UTR-Ecto-sp13_S_contig18066:3396..35541681462933.3482132-UTR-Ecto-sp13_S_contig18066:3396..3554Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18066 3397..3554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462933.2933125-CDS-Ecto-sp13_S_contig18066:683..8631681462933.2933125-CDS-Ecto-sp13_S_contig18066:683..863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18066 684..863 -
1681462933.3045373-CDS-Ecto-sp13_S_contig18066:1247..13491681462933.3045373-CDS-Ecto-sp13_S_contig18066:1247..1349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18066 1248..1349 -
1681462933.316876-CDS-Ecto-sp13_S_contig18066:1949..20881681462933.316876-CDS-Ecto-sp13_S_contig18066:1949..2088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18066 1950..2088 -
1681462933.325269-CDS-Ecto-sp13_S_contig18066:2525..26111681462933.325269-CDS-Ecto-sp13_S_contig18066:2525..2611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18066 2526..2611 -
1681462933.3338127-CDS-Ecto-sp13_S_contig18066:3165..33961681462933.3338127-CDS-Ecto-sp13_S_contig18066:3165..3396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18066 3166..3396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18066.5552.1

>prot_Ecto-sp13_S_contig18066.5552.1 ID=prot_Ecto-sp13_S_contig18066.5552.1|Name=mRNA_Ecto-sp13_S_contig18066.5552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MAYNRTPLLPPCPSDCLRFRYLVFRADDACVAQDEVSLYSNARERRQWDK
LSEFFAILKTTEHLENARIKSAIGRDEYTRECSALISQYKDAESALLADG
SITNTVDFIKEYQLDCPYAMDRLVKYGVPATVLHRQVDERDQIGRARQAA
ETTQCFITAMDALKLEQRAVDEVQPLIYDLSDRLNKVDGLPNDYEGTQKT
REWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP*
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mRNA from alignment at Ecto-sp13_S_contig18066:202..3554-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18066.5552.1 ID=mRNA_Ecto-sp13_S_contig18066.5552.1|Name=mRNA_Ecto-sp13_S_contig18066.5552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18066:202..3554- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAAGTAGCTTGTTGGACCCAACCGTGGCAATATCCAGTGCGAACGAGG
GAGGGAGGGCTAGACTTGAGAGAGCGCACACCCAGTGAGCGCAGACCAAC
ATTCCCCCAGCTTGACGGCAGAGTGTTATGCGACAATACGGCGTGTGTGC
GTATTAGCATGGCTTACAACAGAACACCTCTCCTGCCGCCATGCCCGAGC
GACTGCTTGCGTTTCAGATATCTCGTGTTTCGTGCCGACGACGCTTGTGT
TGCGCAGGACGAGGTGAGCTTGTATAGTAACGCGAGAGAACGAAGGCAGT
GGGACAAGCTGTCGGAATTTTTCGCTATCCTCAAGACCACGGAGCACCTG
GAGAACGCGCGCATCAAGAGCGCCATTGGGCGAGACGAGGTGCGACTAAT
GCTAGCACCTTGATGCCGGAGTGCGATCGTTCATGTTGACATGTACACTG
ATTCGTTTGCTTCTTGTGTGGCAGGTGCTGCTGGTGCTTTCTTTCGACGG
TAGAGCGAGGTGCGACACCAGTTGTTTAGAGTATGCCACAGCCTCGACTG
ACGCGGCTAGTCCCGACAAAGATTTACGACGATAGCAGCAAACTCAAAGC
ACACCCTCGGCGCCTCGTTGAACCAAGTTTTGTAGCAACCGAAATCAAAC
GATAAAACTACTAGAACGGTCAAACGGATTGGGTTCGGTTGCTGAAGTAG
TGCGTCTTACATTTGTTTGGCTCGTGCCCAGAAATCCAGTTGCACCGGTA
TTTTTTAGCAGAGCAGACACTATCCCCACCTTGACGGCTACCCGCCCTCC
GCCTCCGCCAAATCGAAAAGCGGCTGCTCTCTCAGACGACGTGTGTGTTG
CTTGACTCTCTGTTCCTTGGCCACCACCCCCGCTTGCTGTCTCTCGTGCG
GCGGCGTCCGTTTCGCCGTTACCTCCTCCTCTGTGGCTGGCAGTACACCC
GGGAATGCTCCGCGCTCATCTCGCAGTACAAGGACGCAGAGAGCGCGTTG
CTCGCGGACGGGAGTATCACCAACACAGTGTGAGCGCGCACCGCTTTTAG
AGACTTGTCGGCGTTGAATTTTGGTTCGAGTTGGAGCGCGATGCTGACAA
TCTTTTGGGGGGCGCGGGTATGGGCTTGCTTGTGAAAACGGTTCTCGCGG
TTGATCACGTTTCCCTAGCGTTTTTCGCCTTCATACATACCTGGTACAAA
CGTTTTGCGAGTTCTTGTTCGTTTTGGGGTGTTGCTTGTTTCTCGTTAAA
ATGAATGCTTGAAGATTGTCGGTAACGGATGCGGTTGATGACGGCGAGCT
GATTTGCCCACGACCGTCGAAATTTGGTTTGAGCAGACAGGACTAATGAG
CATCGTCGTTGACCAAGAAAAAAACATGAGCTATCCGGCGCTCCCTAGTC
ATCCACTTGTCTCCCTCTTTTCCCCCTTGCGTCGTGTGCCCTTTCCTCTC
ATCTCGCTCGCGACAGCGATTTTATCAAGGAGTACCAGCTAGATTGCCCT
TACGCGATGGACCGGCTGGTCAAGTACGGCGTTCCCGCCACAGTCTTGCA
CCGACAAGTAGACGAGAGGGATCAGATCGGCAGGGCGCGCCAGGCGGCCG
AAACGGTGAGTCTTCCGAAGCTCGCTGGTTCTACAAAAGAAGAGGTCTTT
TTTTTGTGTTGTACAAGTAGAAGGCCGGTGTTTCTGTACGTACGAAGAGA
GTGCCCCCGTCCCCATGCCATTCGACGAAATTCGTCATCCCCATGCTCAG
TAGCTCTACCGCCGTCGAAGAGCGCACCTGCTACCACAAATAGAAAAAGC
GCGGGGAAACAACCGAAGAATTGGTCTGAGGTGTGCCCCCGCACCGGATC
GCACAACAGGGTAGCCGCGAAGTTCTGATTGGCACGCCTGTCTTGTCGAC
AGTATGGTCTGTTGTTTTCCGATTGCAAGAAGAATTTCTCGGCCATGTGT
CCATACAAGGCGAGAGATAGGGGTCGCCTTGTGCTTGCACGACGATACAG
CCATGTATTTGTGGCTCGCGGGTTGAACTTTTTCGTTTCGAGTCTTGACG
AAACAAAACCGTGTCTTGCACGATTCACCCCTCCAATAATTGACACTTAC
GGTTCAACAAATGCTGCTCTTTTTTCGCTGACAGCACTCCCAGAAAGTCC
GCCTTCCTGTCCCTGTCCCCCCTCCGTTCATGTCGCACGTATGCTGTGTT
TCCAGACGCAATGTTTCATCACCGCGATGGACGCCTTGAAGCTGGAGCAG
AGGGCTGTCGATGAGGTGCAGCCGCTCATCTACGACCTTTCGGACCGGTT
GAATAAGGTGCGTCGTCTGCAGCAGCAGCGTTCATATTGGGGGGAGAGGG
GGGGGGGGCGGAGTTTGCCGTCACACCCGAGCCCCAAGCTCGAGCGGTAG
CCTAAACTCTATCCCTGCCCCATCCTGCAGACCCTCGTCAACCTCTATGT
CTCTACTCCACTGCCCTGGCACGCCCGAATTCAATGTTTGACACAAACTC
TTTTCCTTCTTGACCTGACATTTTGATACGTCGCCGTCACTCCCAAAGAG
TAGAACCACGACCCCGAATTTTCTGCAAGCCCTAAACTCACTCGTCTCGT
CCGCTCCCCAGACACACTCCCGTGTGTTGCGCCAGGCAACTTTTTTTTTA
ACACTCCACATACTGCTGTGCCCTGGTGTTGTGGTTCCAAGGTGGACGGG
CTTCCGAATGACTACGAGGGGACACAGAAGACCCGGGAGTGGCTGGTGAC
TCTGAACGCCATGCGGGCGGCCGACGAGCTCTCGGAGGACCAGGCGCGGC
AGCTCTTGCACGACCTCGACACGTCCTACAGCGCCTTCTTCCGGTACTTG
GAGATGACGCAAAAGCCGTGAAGGCCATGCAATAATACTATGGCGCACCA
CTGCACACGGTGGCGGGATGATGTCGAAATGAAAACGAGAGAGGGTGGCC
TGTTGGAAATATGATGTCCTCCGTGTGACATGCTTACGTGAGATGGCAGG
GTACTGCGATAAGGAGCATCTCCATCATGACACTCGTGGCAGAGAGGCAG
GAGGCCGTCGCGAAGTGAGCCGTGCGGCCGTGTTGTACTGTGAACACGTA
GTCGGGATGCGGTGGGTGGGCTTCACGCAGCTTTCATCGGGGTTCTGTGC
CCAACGGACGAACGTTGATGAACGGTTGGATCCCTAACTGGCAAATTGGA
TGTGCTGTACAGAGCTTTCCCAGAAAACGGACGGTGGTGTTCGTTGCCTA
GGCGTTCCACGCTCGTCGGCATTCATAGGACATGTAGAGATGAGTGTTTG
GTTTTCGACAGGCGACTTTTGAATGTTGTGGTGCTGAGTTTTTTTGTTCG
GGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18066:202..3554-

>mRNA_Ecto-sp13_S_contig18066.5552.1 ID=mRNA_Ecto-sp13_S_contig18066.5552.1|Name=mRNA_Ecto-sp13_S_contig18066.5552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18066:202..3554- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTACAACAGAACACCTCTCCTGCCGCCATGCCCGAGCGACTGCTT
GCGTTTCAGATATCTCGTGTTTCGTGCCGACGACGCTTGTGTTGCGCAGG
ACGAGGTGAGCTTGTATAGTAACGCGAGAGAACGAAGGCAGTGGGACAAG
CTGTCGGAATTTTTCGCTATCCTCAAGACCACGGAGCACCTGGAGAACGC
GCGCATCAAGAGCGCCATTGGGCGAGACGAGTACACCCGGGAATGCTCCG
CGCTCATCTCGCAGTACAAGGACGCAGAGAGCGCGTTGCTCGCGGACGGG
AGTATCACCAACACAGTCGATTTTATCAAGGAGTACCAGCTAGATTGCCC
TTACGCGATGGACCGGCTGGTCAAGTACGGCGTTCCCGCCACAGTCTTGC
ACCGACAAGTAGACGAGAGGGATCAGATCGGCAGGGCGCGCCAGGCGGCC
GAAACGACGCAATGTTTCATCACCGCGATGGACGCCTTGAAGCTGGAGCA
GAGGGCTGTCGATGAGGTGCAGCCGCTCATCTACGACCTTTCGGACCGGT
TGAATAAGGTGGACGGGCTTCCGAATGACTACGAGGGGACACAGAAGACC
CGGGAGTGGCTGGTGACTCTGAACGCCATGCGGGCGGCCGACGAGCTCTC
GGAGGACCAGGCGCGGCAGCTCTTGCACGACCTCGACACGTCCTACAGCG
CCTTCTTCCGGTACTTGGAGATGACGCAAAAGCCGTGA
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