mRNA_Ecto-sp13_S_contig1806.5548.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1806.5548.1
Unique Name	mRNA_Ecto-sp13_S_contig1806.5548.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: D7FHI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI4_ECTSI)

HSP 1 Score: 627 bits (1616), Expect = 3.340e-222
Identity = 327/397 (82.37%), Postives = 342/397 (86.15%), Query Frame = 1

Query:   58 MALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCS--YLWMTLQGAAEVCLTDGDEESLKLTQRNVTGNLSPAVCRRSPGTTSCCDXXXXXXXXXXXXERTGCNANSTGGNTNIVESSVDRRPPPATAATVS-------VQKLRWGCADDMHAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSLVNTTEGSDQDNHTAPSPPRTIADHVTGEDQNTEISSTAAPDSCEALDSSGCESGTGKPAITKMSAVKGLMAESSRSRSEREVRRRVVVLLAHKRRHVSEEAFFEDLEKELGGERSVRGTSEDDIHPDFRGTGIRLHMFVVDV 1221
            MALVLHSYASPFTDQLQL +R FTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALF +  Y  MT +GAAEVCLTDGDEESLKLTQRNVT NL P   RRSP T SCCD            ERTGCNA+S GG+TN VESS DRRPP ATAAT+S       VQKLRWGCADDMHA GVP G DGDSGS RAWDVVLGSDIAALPYASAYGDLLQTIVSLVN T+GS Q +HTAPSPPRTI+DHVTGEDQNTEIS+TAA DSCEALD SGCESG G+PAI K S +KGLMA++ RSRSER  RRRVVVLLAHKRRHVSEEAFFEDL +ELGGERSVRGTSEDDIHPDFRGTGIRLHMFVVDV
Sbjct:    1 MALVLHSYASPFTDQLQLKERFFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFAALQYHCMTFKGAAEVCLTDGDEESLKLTQRNVTDNLQPDFSRRSPSTASCCDQQQAQDATAAEEERTGCNADSKGGSTNSVESSADRRPPQATAATISATAATISVQKLRWGCADDMHAAGVPLGGDGDSGSSRAWDVVLGSDIAALPYASAYGDLLQTIVSLVNNTKGSGQVSHTAPSPPRTISDHVTGEDQNTEISNTAASDSCEALDGSGCESGRGEPAIIKTSPMKGLMADAGRSRSERAGRRRVVVLLAHKRRHVSEEAFFEDLREELGGERSVRGTSEDDIHPDFRGTGIRLHMFVVDV 397

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: A0A6H5KX94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX94_9PHAE)

HSP 1 Score: 619 bits (1596), Expect = 1.960e-219
Identity = 327/388 (84.28%), Postives = 339/388 (87.37%), Query Frame = 1

Query:   58 MALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNVTGNLSPAVCRRSPGTTSCCDXXXXXXXXXXXXERTGCNANSTGGNTNIVESSVDRRPPPATAATVSVQKLRWGCADDMHAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSLVNTTEGSDQDNHTAPSPPRTIADHVTGEDQNTEISSTAAPDSCEALDSSGCESGTGKPAITKMSAVKGLMAESSRSRSEREVRRRVVVLLAHKRRHVSEEAFFEDLEKELGGERSVRGTSEDDIHPDFRGTGIRLHMFVVDV 1221
            MALVLHSYASPFTDQLQL +RLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELG        AA        TL GAAEVCLTDGDEESLKLTQRNVTGNLSPAVCRRSP T SCCD            ERT CNA+ST G+TNIVES VDRRPP ATAATVSVQ+LRWGCADDMHAVGVPR  DGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSLVN T+GS QD HTAPSPPRTIADHVTG DQNTEISSTAAPDSCE LD SG ESGTGKPAITK SA+KG+MAE+ RS SERE RR+VVVLLAHKRRH+SEEAFFEDL++ELGGERSVRGTSEDDIHPDFRGTGIRLHMFVVDV
Sbjct:    1 MALVLHSYASPFTDQLQLRERLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGTGTGFLGIAAA-------TL-GAAEVCLTDGDEESLKLTQRNVTGNLSPAVCRRSPSTASCCDQQQAQAVTAADKERTPCNADSTAGSTNIVESPVDRRPPLATAATVSVQQLRWGCADDMHAVGVPRRGDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSLVNITDGSGQDKHTAPSPPRTIADHVTGADQNTEISSTAAPDSCEPLDGSGRESGTGKPAITKTSAMKGVMAEAGRSGSEREGRRQVVVLLAHKRRHISEEAFFEDLKEELGGERSVRGTSEDDIHPDFRGTGIRLHMFVVDV 380

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: A0A5D6Y5E6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5E6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.400e-24
Identity = 88/246 (35.77%), Postives = 117/246 (47.56%), Query Frame = 1

Query:   61 ALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNVTGNLSPAVCRRSPGTTSCCDXXXXXXXXXXXXERTGCNANSTGGNTNIVESSVDRRPPPATAATVSVQKLRWGCADDMHAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSLV 798
            ALV  SY +PF D L+   R F + G+ ++I Q W+ DG+GGT +GFGASVY A+  LA +LE H + VRG+RVIELG  C  P  A +    L     GA+ V LTDGD  S++L +RNV  N   A CR                                                         ++  WG   D   VG  + ED  + +P A+DVVLG+DI A PYA A+  LL ++ +LV
Sbjct:  660 ALVAFSYRNPFHDALRDATRWFPLAGRRVQIAQGWRADGRGGTRLGFGASVYDASVALALFLESHDHHVRGRRVIELG--CG-PGLAGIAAGVL-----GASSVLLTDGDAGSVELAKRNVELNALGATCR--------------------------------------------------------ARQYLWG---DPMVVGDDKDED--TPAPTAFDVVLGADIVACPYAEAFEALLVSLRALV 836

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: H3HDA5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDA5_PHYRM)

HSP 1 Score: 107 bits (266), Expect = 1.820e-23
Identity = 63/131 (48.09%), Postives = 81/131 (61.83%), Query Frame = 1

Query:   61 ALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNVTGN-LSPAVC 450
            ALV  S+ +PF D LQ   R F I GK ++I QAW+GDG+GGT +GFGASVY AA  L+ YL  H  LV+G RV+ELG  C  P    +  ++L         V +TDGD  S++LTQRN+  N +S  VC
Sbjct:   24 ALVPFSFRNPFHDALQDATRWFPIAGKRIRIDQAWQGDGRGGTALGFGASVYDAAIALSLYLAAHRDLVKGNRVVELG--CG-PGLVGVVAAHL-----EPKSVVITDGDPASVELTQRNIKANDISGGVC 146

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: A0A3M6VH25_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VH25_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.720e-23
Identity = 81/258 (31.40%), Postives = 119/258 (46.12%), Query Frame = 1

Query:   34 CGVSSGLIMALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNV-TGNLSPAVCRRSPGTTSCCDXXXXXXXXXXXXERTGCNANSTGGNTNIVESSVDRRPPPATAATVSVQKLRWGCADDMHAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSLVNT 804
            C  ++     LV +S+ +PF D L+   R F I GK ++I QAW+ DG+GGT +GFGASVY +A  L+ YL  H  LV+GKR+IELG  C  P    +  ++L         + +TDGD  S+ LT+RN+   NLS  +C                                                        + +K  WG  D  H + VP+     +G    +DV+LG+DI A PYASA+  L++++  L  +
Sbjct:    9 CPSTASSTYVLVPYSFRNPFHDALRDATRWFPIAGKRIRIDQAWQSDGRGGTTLGFGASVYDSAIALSLYLAAHQDLVKGKRIIELG--CG-PGLVGIVAAHL-----EPRSIVITDGDSASVALTRRNMEVNNLSKEIC--------------------------------------------------------TAEKYLWGDLD--HHL-VPK-----TGGHSHYDVILGADIVACPYASAFEALMKSLGELAGS 194

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: A0A0N7L683_PLAHL (Predicted methyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L683_PLAHL)

HSP 1 Score: 107 bits (268), Expect = 8.690e-23
Identity = 81/247 (32.79%), Postives = 111/247 (44.94%), Query Frame = 1

Query:   61 ALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNV-TGNLSPAVCRRSPGTTSCCDXXXXXXXXXXXXERTGCNANSTGGNTNIVESSVDRRPPPATAATVSVQKLRWGCAD----DMHAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTI 786
            ALV  S+ +PF + LQ   R F I GK ++I QAW+ DG+GGT +G+GASVY AA  L+ YL  HP LV+G R+IELG  C  P    +  ++L         V +TDGD  S+ LTQ NV   NLS  +C                                                        +V+K  WG  +     MHA                +DV++G+DI A PYASA+ +L++T+
Sbjct:   27 ALVPFSFHNPFHNALQDATRWFPIAGKAIRIDQAWQSDGRGGTTLGYGASVYDAAIALSLYLVDHPDLVKGNRIIELG--CG-PGLVGVVAAHL-----EPKSVVITDGDSASVALTQHNVHLNNLSADIC--------------------------------------------------------TVEKYIWGDLEHHLVSMHA---------------PYDVIIGADIVACPYASAFKELMRTL 194

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: A0A6A3VI85_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VI85_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.030e-22
Identity = 82/246 (33.33%), Postives = 112/246 (45.53%), Query Frame = 1

Query:   61 ALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNVTGN-LSPAVCRRSPGTTSCCDXXXXXXXXXXXXERTGCNANSTGGNTNIVESSVDRRPPPATAATVSVQKLRWGCADDMHAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSL 795
            ALV  S+ +PF D L+   R F I GK ++I QAW+ DG+GGT +GFGASVY AA  L+ YL  H  +V+G RVIELG  C  P    +  ++L         V +TDGD  S+ LTQ N+  N LS  VC                                                        + ++  WG   D+    VP+ +      P  +DV+LG+DI A PYASA+  L+ ++ SL
Sbjct:   35 ALVPFSFRNPFHDALRDATRWFPIAGKRIRIDQAWQSDGRGGTALGFGASVYDAAIALSLYLAAHRDVVKGNRVIELG--CG-PGLVGVVAAHL-----EPKNVVITDGDPASVALTQHNIRVNGLSEDVC--------------------------------------------------------TAEEYLWG---DLEHRFVPKAD-----GPAHYDVILGADIVACPYASAFASLMASLKSL 208

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: G4YG32_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YG32_PHYSP)

HSP 1 Score: 106 bits (264), Expect = 2.800e-22
Identity = 85/252 (33.73%), Postives = 113/252 (44.84%), Query Frame = 1

Query:   43 SSGLIMALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNVTGNLSPA-VCRRSPGTTSCCDXXXXXXXXXXXXERTGCNANSTGGNTNIVESSVDRRPPPATAATVSVQKLRWGCADDMHAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSL 795
            S   + ALV  S+ SPF D L+   R F I GK +++ QAW+ DG+GGT +GFGASVY AA  L+ YL  H  LV G RVIELG  C  P    +  ++L         V +TDGD  S+ LT+RN+  N  P  VC                                                        S ++  WG   D+    VP   DG    P  +DV+LG+DI A PYASA+  L+ ++ +L
Sbjct:   17 SVSTVCALVPFSFRSPFHDALRDATRWFPIAGKRIRVDQAWQSDGRGGTALGFGASVYDAAIALSLYLAAHRDLVIGNRVIELG--CG-PGLVGVVAAHL-----EPKSVVITDGDPASVALTKRNIEVNELPGDVC--------------------------------------------------------SAEEYLWG---DLEHPLVPT-RDG----PEHYDVILGADIVACPYASAFESLMTSLKAL 196

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: M4B6W0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6W0_HYAAE)

HSP 1 Score: 105 bits (263), Expect = 3.280e-22
Identity = 83/246 (33.74%), Postives = 114/246 (46.34%), Query Frame = 1

Query:   61 ALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNVTGN-LSPAVCRRSPGTTSCCDXXXXXXXXXXXXERTGCNANSTGGNTNIVESSVDRRPPPATAATVSVQKLRWGCADDMHAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSL 795
            ALV  S+ +PF + L  + R F I GK ++I QAW+ DG+GGT +GFGASVY AA  L+ YL  H  LV GKR+IELGG    P    +  ++L         + +TDGD  S+ LT+RN+  N LS +VC                                                        + +K  WG  D  H + VPR      G    +DV+LG+DI A PYASA+  L++++  L
Sbjct:   16 ALVPFSFRNPFHNALCDSTRWFPIAGKRIRIDQAWQNDGRGGTALGFGASVYDAAIALSLYLASHRDLVEGKRIIELGGG---PGLVGVVAAHL-----KPKGIVITDGDPASVALTRRNIELNGLSESVC--------------------------------------------------------TAEKYLWGDVD--HEL-VPR-----IGGCGYYDVILGADIVACPYASAFEALMKSLRKL 189

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BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Match: A0A7S2XUW0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUW0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.110e-22
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 1

Query:   61 ALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQGAAEVCLTDGDEESLKLTQRNVTGNL 435
            A+V+ S AS FTD  QL  R F I    ++++Q WK DGKGGT +G GA+VY AA+VL+EYL R+  L+ G+RV+ELG    + A AA         L GA++V  TDGDE+ + L + N+  NL
Sbjct:    9 AIVVFSQASSFTDTKQLPSRSFQIGDHFVQLEQRWKNDGKGGTTLGHGATVYNAAFVLSEYLARNRPLLEGQRVVELGTGPGLVAIAA--------ALHGASQVIATDGDEDVVDLARCNIQANL 125

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1806.5548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FHI4_ECTSI	3.340e-222	82.37	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KX94_9PHAE	1.960e-219	84.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A5D6Y5E6_9STRA	1.400e-24	35.77	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
H3HDA5_PHYRM	1.820e-23	48.09	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A3M6VH25_9STRA	2.720e-23	31.40	Uncharacterized protein n=1 Tax=Peronospora effusa...	[more]
A0A0N7L683_PLAHL	8.690e-23	32.79	Predicted methyltransferase n=1 Tax=Plasmopara hal...	[more]
A0A6A3VI85_9STRA	1.030e-22	33.33	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
G4YG32_PHYSP	2.800e-22	33.73	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]
M4B6W0_HYAAE	3.280e-22	33.74	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
A0A7S2XUW0_9STRA	4.110e-22	46.40	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1806	contig	Ecto-sp13_S_contig1806:3722..6709 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	115.5
Seed ortholog evalue	5.4e-23
Seed eggNOG ortholog	36331.EPrPI00000018914
Preferred name	METTL22
Model size	1539
KEGG ko	ko:K03141
KEGG Pathway	ko03022,ko03420,ko05203,map03022,map03420,map05203
KEGG Module	M00290
Hectar predicted targeting category	other localisation
GOs	GO:0000428,GO:0000439,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006351,GO:0006355,GO:0006357,GO:0006360,GO:0006366,GO:0006464,GO:0006468,GO:0006479,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0016740,GO:0016741,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031072,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032259,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Exons	3
EggNOG free text desc.	General transcription factor IIH subunit. Source PGD
EggNOG OGs	1MAIY@121069,KOG2074@1,KOG2074@2759,KOG2793@1,KOG2793@2759
Ec32 ortholog description	S-adenosyl-L-methionine-dependent methyltransferase
Ec32 ortholog	Ec-25_002250.2
Cds size	1167
COG Functional cat.	KL
Best tax level	Pythiales
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03021,ko03400

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462933.0771394-UTR-Ecto-sp13_S_contig1806:3721..3778	1681462933.0771394-UTR-Ecto-sp13_S_contig1806:3721..3778	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig1806 3722..3778 +
1681462933.1165967-UTR-Ecto-sp13_S_contig1806:6394..6709	1681462933.1165967-UTR-Ecto-sp13_S_contig1806:6394..6709	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig1806 6395..6709 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462933.0875216-CDS-Ecto-sp13_S_contig1806:3778..3880	1681462933.0875216-CDS-Ecto-sp13_S_contig1806:3778..3880	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1806 3779..3880 +
1681462933.100899-CDS-Ecto-sp13_S_contig1806:4715..4914	1681462933.100899-CDS-Ecto-sp13_S_contig1806:4715..4914	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1806 4716..4914 +
1681462933.1086276-CDS-Ecto-sp13_S_contig1806:5528..6394	1681462933.1086276-CDS-Ecto-sp13_S_contig1806:5528..6394	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1806 5529..6394 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1806.5548.1	prot_Ecto-sp13_S_contig1806.5548.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1806 3779..6394 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1806:3722..6709+
coding sequence from alignment at Ecto-sp13_S_contig1806:3722..6709+

protein sequence of mRNA_Ecto-sp13_S_contig1806.5548.1

>prot_Ecto-sp13_S_contig1806.5548.1 ID=prot_Ecto-sp13_S_contig1806.5548.1|Name=mRNA_Ecto-sp13_S_contig1806.5548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=389bp
MALVLHSYASPFTDQLQLNDRLFTIDGKLLKIQQAWKGDGKGGTDIGFGA
SVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFCSYLWMTLQ
GAAEVCLTDGDEESLKLTQRNVTGNLSPAVCRRSPGTTSCCDQQQAQAVT
AAEEERTGCNANSTGGNTNIVESSVDRRPPPATAATVSVQKLRWGCADDM
HAVGVPRGEDGDSGSPRAWDVVLGSDIAALPYASAYGDLLQTIVSLVNTT
EGSDQDNHTAPSPPRTIADHVTGEDQNTEISSTAAPDSCEALDSSGCESG
TGKPAITKMSAVKGLMAESSRSRSEREVRRRVVVLLAHKRRHVSEEAFFE
DLEKELGGERSVRGTSEDDIHPDFRGTGIRLHMFVVDV*

mRNA from alignment at Ecto-sp13_S_contig1806:3722..6709+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1806.5548.1 ID=mRNA_Ecto-sp13_S_contig1806.5548.1|Name=mRNA_Ecto-sp13_S_contig1806.5548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1806:3722..6709+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACACACCAAACGTGCGTGTGCGTTGTGGTGTTGTGGAGTGTCATCAGG
CTTAATAATGGCGCTTGTGCTTCACTCCTACGCTTCACCGTTCACAGATC
AGCTCCAGCTCAACGACCGCCTTTTCACCATCGACGGCAAACTCCTCAAA
ATACAGCAGGTGGGTGGGTGGGCGACCAGCGACGCTGTAGCTGCCCGTGC
ACGCAACACACAGCGAGGAGAACAGGAATGCCTAATGGCTGGATACAACT
GGAAGGATGTCTCCGAAGTGTTTCTTCCCAGCCCAAGGATCGCATGAACG
CGTTGCGTATCCGTGATAAATTTCGTCCCGACAAGTATCCGCAACGTCCT
TTGAGGTAGCAGGCTGTGTGCCACCACCACCGAACAGCAGAACCACCAAC
ACTTCCCACGGCTGTGAAACATAAGGATAGCTTGTGCTGCAGCCCTAGGA
ACTCCGTGGAATATTGCTGGACCTTGTGTTGAGACGGCAGGGTAGGACAC
GAGACATGGAAGCATTGAAGCACAGAATATTTCCCCCCCACTTTTGGGTG
CTTCCTGAACCATGGTGTCCCAAAAATCCTTGCCATCGCTTAGCAGTCTG
CAGGCTCATCTTCCTTCTTCTTCACCGCTAGCAACGGCGATTTTGACAAC
CAGATAGGGCGGAGAGTCGTCGATGCTCAGAGAATTGATCGCACAGCGGA
GGATTCAGGTCGCCGCCAGAGGTCTTGCGAGCGGTGCTTTCAACTGACCT
TGACTCCCTCACGCGGCACCTCCTCTGCTTGCTGCATGTGCCATCCTCCT
CTTTCCTCTTTTCATTTCTCTCTCTTTGGGTGGGGCGTTAGCGGGAGGGA
ATGTGTCTGTGGCAGACGCGATGGCGTCAAGTTGGATCAGAAACTGCCGC
ACCACACGAACTGTTGAGCAGCAGCATTGGCTTCATGTGACAACATCCTC
CCCCCCCCCCTCTCCCCCTACACCCATCCTTCGACGACAACGAGGCCTGG
AAAGGAGATGGAAAGGGAGGGACGGACATTGGCTTTGGGGCTAGCGTCTA
CCCAGCTGCCTATGTTCTAGCGGAGTACCTTGAGCGCCACCCTTACCTCG
TGCGTGGGAAACGGGTGATAGAGCTAGGTGGGTGTTGTGCTATTCCCGCG
CGAGCTGCGCTCTTTTGCAGCTACCTCTGGATGACACTTCAAGGTGGAAA
CCCACCCTCAGTTTGAGATGGGTTCTTTCTGGTCATAGCCCTGATTTGTA
CCACATTTTTTATTGTTTACACTCTTGGGTTGTCGGTGATTGGAAGCACT
CCCACAGCTGTGGCCCGGCCATACCTGTGCGAAAAGCATAACAGCTACTA
CCCATGCGCGTTTGCTTTCTTCTCCAGGTACTGGGACAGGATTTCTCGGT
ATTGCCGCGGCGACCCTTGGTGAGTCTCGAGTCTGTAGGCAAGAACCGCG
TCGGATGCCGGTCGGGCAGATGATAGAACAACGTTGTGTTCCTGTGTGCT
GCATGTTTGGTCACCTGTGTATAGAATATCCGAGGTTCTTCATGTTGTTG
CGTCGGACTAGTCACATCACGCCAGACCTATCCTCTCGTTTTCTCAAAAA
CTCACAATCGGATCCCGAAACCGTTCTTGATGCGCCCATAGCCCCGCCAC
CTCCGTTGGCATCTAGTACGAGCGAACGACCTACACAGGTTTATACGAAT
TTCATGCGAAGACAAGAAGTTTAAGTATTACTACTACTTGGCGCGGCGAT
AGTGGCGAGCAACCGGTAATGCCCCCTCTCCCCCCTCCTTGGGCCACCAC
CCTTTAGGAGCCGCCGAGGTATGCTTAACCGACGGAGATGAGGAAAGCCT
GAAGCTGACCCAGAGAAATGTGACGGGCAATCTCAGTCCCGCTGTCTGTC
GTCGAAGTCCTGGTACTACCTCCTGCTGCGACCAGCAGCAAGCTCAAGCC
GTCACCGCTGCAGAGGAGGAGAGAACCGGGTGCAATGCGAACTCCACAGG
CGGCAACACGAATATCGTCGAGAGTTCTGTGGATCGAAGACCACCACCAG
CCACTGCGGCCACGGTTTCCGTGCAAAAGCTTCGCTGGGGCTGTGCAGAC
GACATGCACGCTGTTGGTGTTCCCCGCGGGGAAGACGGCGACAGCGGAAG
CCCTCGTGCTTGGGACGTGGTACTGGGGTCGGATATCGCCGCCTTGCCTT
ACGCGTCCGCGTACGGCGACCTCCTCCAAACAATCGTTTCGCTCGTAAAC
ACCACCGAGGGTAGTGACCAAGACAACCACACCGCGCCGTCGCCACCTCG
AACAATTGCTGACCACGTGACCGGAGAGGATCAAAACACGGAAATTTCAA
GCACTGCTGCTCCCGACAGCTGCGAAGCCCTCGATAGCTCCGGCTGTGAA
AGCGGTACGGGAAAACCGGCGATAACCAAAATGTCGGCAGTGAAAGGTTT
GATGGCGGAGTCCAGCCGCAGCCGGTCGGAAAGAGAGGTAAGGCGGCGGG
TAGTTGTGCTCTTGGCACATAAACGAAGACACGTCTCAGAGGAGGCGTTT
TTCGAGGATCTGGAGAAGGAGCTAGGCGGAGAAAGGAGCGTCCGAGGAAC
CAGCGAGGACGACATCCACCCCGATTTTCGGGGCACGGGAATACGCTTAC
ACATGTTCGTGGTCGATGTTTGACGCACGGGGCGCCACCCGTCTCAGGCT
GGTCGTGCCCCGGGTTTAGTTTTCGGTGAGGGTGTTCGACGTTGCTTGCT
TCTCTAACCCTACAGCTACTGTAAGTTGATAATTCGTGTCTCGGGTCTTA
CTTGCCTCAGAATGACACCGCTTTTCGAGGTTCTTTGTCAGGGCAGGCAG
TCATGAATACATTCTCGTTCTTCTCACTTGTGTAGGCTCTGTAGGCTTGG
TTCGCTCAGACGTTGGTGCTCGGACCAGGATATTACCCCCCCTTTGGGAC
AAACTTGTTGGAAATTGGGTACGTACGACCTTGTGCAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1806:3722..6709+

>mRNA_Ecto-sp13_S_contig1806.5548.1 ID=mRNA_Ecto-sp13_S_contig1806.5548.1|Name=mRNA_Ecto-sp13_S_contig1806.5548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1806:3722..6709+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTTGTGCTTCACTCCTACGCTTCACCGTTCACAGATCAGCTCCA
GCTCAACGACCGCCTTTTCACCATCGACGGCAAACTCCTCAAAATACAGC
AGGCCTGGAAAGGAGATGGAAAGGGAGGGACGGACATTGGCTTTGGGGCT
AGCGTCTACCCAGCTGCCTATGTTCTAGCGGAGTACCTTGAGCGCCACCC
TTACCTCGTGCGTGGGAAACGGGTGATAGAGCTAGGTGGGTGTTGTGCTA
TTCCCGCGCGAGCTGCGCTCTTTTGCAGCTACCTCTGGATGACACTTCAA
GGAGCCGCCGAGGTATGCTTAACCGACGGAGATGAGGAAAGCCTGAAGCT
GACCCAGAGAAATGTGACGGGCAATCTCAGTCCCGCTGTCTGTCGTCGAA
GTCCTGGTACTACCTCCTGCTGCGACCAGCAGCAAGCTCAAGCCGTCACC
GCTGCAGAGGAGGAGAGAACCGGGTGCAATGCGAACTCCACAGGCGGCAA
CACGAATATCGTCGAGAGTTCTGTGGATCGAAGACCACCACCAGCCACTG
CGGCCACGGTTTCCGTGCAAAAGCTTCGCTGGGGCTGTGCAGACGACATG
CACGCTGTTGGTGTTCCCCGCGGGGAAGACGGCGACAGCGGAAGCCCTCG
TGCTTGGGACGTGGTACTGGGGTCGGATATCGCCGCCTTGCCTTACGCGT
CCGCGTACGGCGACCTCCTCCAAACAATCGTTTCGCTCGTAAACACCACC
GAGGGTAGTGACCAAGACAACCACACCGCGCCGTCGCCACCTCGAACAAT
TGCTGACCACGTGACCGGAGAGGATCAAAACACGGAAATTTCAAGCACTG
CTGCTCCCGACAGCTGCGAAGCCCTCGATAGCTCCGGCTGTGAAAGCGGT
ACGGGAAAACCGGCGATAACCAAAATGTCGGCAGTGAAAGGTTTGATGGC
GGAGTCCAGCCGCAGCCGGTCGGAAAGAGAGGTAAGGCGGCGGGTAGTTG
TGCTCTTGGCACATAAACGAAGACACGTCTCAGAGGAGGCGTTTTTCGAG
GATCTGGAGAAGGAGCTAGGCGGAGAAAGGAGCGTCCGAGGAACCAGCGA
GGACGACATCCACCCCGATTTTCGGGGCACGGGAATACGCTTACACATGT
TCGTGGTCGATGTTTGA