mRNA_Ecto-sp13_S_contig18057.5546.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18057.5546.1
Unique NamemRNA_Ecto-sp13_S_contig18057.5546.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18057.5546.1 vs. uniprot
Match: D7FID8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.940e-17
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   19 MATTADVKNKMREHFSPVLFSPSDIADERGLLRKLLHDCKRVPDHVVTVYKQKANKSNPTVLSQDTTAA 225
            M TTA+V NKM+EHFSP LFSP DI D+R LLRKLLHDCK   +  V   +Q+AN  +PTV SQD T++
Sbjct:    1 MVTTANVDNKMKEHFSPDLFSPLDITDDRRLLRKLLHDCKVRYEREVE--QQQANNMDPTVESQDPTSS 67
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BLAST of mRNA_Ecto-sp13_S_contig18057.5546.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.750e-9
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 MCKKRPMATTADVKNKMREHFSPVLFSPSDIADERGLLRKLLHDCKRVPDHVVTVYKQKANK 186
            +C++ P+ T A+VKN++  HF P LFSPSDI +ER +LR+LL +CK   +    ++K K  K
Sbjct:  851 ICQQWPVVTVAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCKVRYEREKDLHKSKKGK 912
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BLAST of mRNA_Ecto-sp13_S_contig18057.5546.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.720e-8
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 MCKKRPMATTADVKNKMREHFSPVLFSPSDIADERGLLRKLLHDCK 138
            +C++ P+ T A+VKN++  HF P LFSPSDI +ER +LR+LL +CK
Sbjct:  549 ICQQWPVVTAAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCK 594
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BLAST of mRNA_Ecto-sp13_S_contig18057.5546.1 vs. uniprot
Match: D7FTK7_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK7_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 1.210e-5
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   16 PMATTADVKNKMREHFSPVLFSPSDIADERGLLRKLLHDCK 138
            P+AT A+V + M++HF+P LFSPSDI++ER +LR+LL   K
Sbjct:   74 PIATQAEVDDGMQKHFTPELFSPSDISNERRMLRQLLQTYK 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18057.5546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FID8_ECTSI2.940e-1760.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTD8_9PHAE5.750e-945.16ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D8LDN6_ECTSI2.720e-854.35ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FTK7_ECTSI1.210e-556.10ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18057contigEcto-sp13_S_contig18057:235..1427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001520.1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.972343-CDS-Ecto-sp13_S_contig18057:234..3321681462932.972343-CDS-Ecto-sp13_S_contig18057:234..332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18057 235..332 -
1681462932.985541-CDS-Ecto-sp13_S_contig18057:1261..14271681462932.985541-CDS-Ecto-sp13_S_contig18057:1261..1427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18057 1262..1427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18057.5546.1prot_Ecto-sp13_S_contig18057.5546.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18057 235..1427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18057.5546.1

>prot_Ecto-sp13_S_contig18057.5546.1 ID=prot_Ecto-sp13_S_contig18057.5546.1|Name=mRNA_Ecto-sp13_S_contig18057.5546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MCKKRPMATTADVKNKMREHFSPVLFSPSDIADERGLLRKLLHDCKRVPD
HVVTVYKQKANKSNPTVLSQDTTAALQTWRWWRISQRY
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mRNA from alignment at Ecto-sp13_S_contig18057:235..1427-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18057.5546.1 ID=mRNA_Ecto-sp13_S_contig18057.5546.1|Name=mRNA_Ecto-sp13_S_contig18057.5546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18057:235..1427- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCAAGAAGCGGCCGATGGCGACGACAGCAGACGTAAAAAACAAGAT
GCGGGAGCACTTCAGCCCCGTCCTCTTCAGCCCCTCGGATATCGCGGATG
AACGCGGTCTGCTCAGGAAGCTGCTGCATGATTGCAAGCGAGTGCCCGAT
CATGTTGTTACCGTTTGTCTTACTGGCTGCAAACCCTAAACCCTTGTGGT
CCTACCCAGGAACCCCAGCCTGGTTGGCCACGTATACCACTGACTTTGTT
GCCGTGGCTGCCACACTACATCGGTCGGCACCCACGCAGGCAATACTTAC
GATGTGGGTATTGCTTCTCTCCTGCACCCTTGCGTGTGCTGTGTAGGATG
ATGAAGTCGAAGGTTCGGCGGTGCCGCCAACCTGCTCTACTTGGTGGTCT
TGTATCACTCGTCAAGTACGTAACGCCCTACAGAAGGATCGACCGACTGT
CAGCGGGACTCGCTGAAGAGGGCAGAGTGTTGTAGGAGTTCCCACGGGCT
AGGGTTGGTGGCGCCGACAGGCGCAACATGTAGACAAGATCTCTACACTG
TTGGGGGCTGATCGGGTGGGTAGGGTGTGCATTGCAGTTAATGTTCTCGG
GGCGTGGAGCGGATGAACCAGTCTTGAAATGCGGAGATCTCGAGTATTCC
GGAAACACAACACATGTACTCCGCAGCAGGACTTGCAAAGGTGTCGTCTT
GTGTGTGGTTGCCTGGATTCAGCGTGTCGCGCGACAGGTTGGAGGGAGGG
CCATGAAAAGCCAAAGCTGGCCTAGAAGTAGCTTTGGGGTGCGCTTTATA
GGGTCAAGGCGTGTTGAACGCCATCCGTGGCGTTCGACTTCGGCGATTAT
GTATAATATCAACGGCATAGTCTAGAGCAGAACGACGCCCAGTTTTTGGG
TGGGTAAACCGAGCCTCAATACGCCGCCCAGTTCTTGAACTACTTTTTCT
ACACGGCGATGCCATCGGGAATTACCCGTTAAACCCAGCCTTTGTTGCAG
CCTCATCCTCGACCCCCCCCCCAACTGGTGATTCGGTCCGCTGACGGCCT
TCGACAACCCAAATTGATGTAGGGTCCGCCACGAACGCGGGGGAGACAAA
CAGAAAGCCAACAAGAGTAACCCAACGGTGCTGTCTCAAGATACCACAGC
AGCACTCCAGACGTGGAGGTGGTGGAGGATCAGCCAACGATAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18057:235..1427-

>mRNA_Ecto-sp13_S_contig18057.5546.1 ID=mRNA_Ecto-sp13_S_contig18057.5546.1|Name=mRNA_Ecto-sp13_S_contig18057.5546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18057:235..1427- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCAAGAAGCGGCCGATGGCGACGACAGCAGACGTAAAAAACAAGAT
GCGGGAGCACTTCAGCCCCGTCCTCTTCAGCCCCTCGGATATCGCGGATG
AACGCGGTCTGCTCAGGAAGCTGCTGCATGATTGCAAGCGAGTGCCCGAT
CATGTTGTTACCGTTTACAAACAGAAAGCCAACAAGAGTAACCCAACGGT
GCTGTCTCAAGATACCACAGCAGCACTCCAGACGTGGAGGTGGTGGAGGA
TCAGCCAACGATAT
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