mRNA_Ecto-sp13_S_contig18055.5545.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18055.5545.1
Unique NamemRNA_Ecto-sp13_S_contig18055.5545.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A6H5L5U1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5U1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.470e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIK 102
            RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIK
Sbjct:  366 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIK 399
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A7S2EHV9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EHV9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-8
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIK 102
            R+TLLLLDRADD LSPLMHEFTYQ +V DLL IK
Sbjct:  166 RSTLLLLDRADDCLSPLMHEFTYQAMVNDLLPIK 199
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A835YPU4_9STRA (Sec1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.890e-8
Identity = 23/33 (69.70%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGI 99
            R+TLL++DRADDPL+PLMH+FTYQCLV+++L +
Sbjct:  248 RSTLLVMDRADDPLTPLMHDFTYQCLVQEVLPV 280
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A7R9WX81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX81_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.820e-8
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIK 102
            R+TLLLLDR+DD L+PLMH+FTYQ +V DLLG++
Sbjct:   32 RSTLLLLDRSDDCLTPLMHDFTYQAMVNDLLGME 65
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A7S2R8E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8E9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.290e-8
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIK 102
            RATLLLLDR DD LSPLMHEFTYQ +V DLL ++
Sbjct:   91 RATLLLLDRTDDCLSPLMHEFTYQAMVNDLLTVE 124
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A7S1D716_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D716_CYCTE)

HSP 1 Score: 53.9 bits (128), Expect = 2.590e-7
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGI---KVTI 111
            RATLL+LDR DD LSPLMH+FTYQ +V DLL I   K+T+
Sbjct:  180 RATLLILDRKDDCLSPLMHDFTYQAMVNDLLSIDDEKITL 219
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A367J3S0_RHIAZ (Vacuolar sorting protein VPS33/slp1 (Fragment) n=2 Tax=Rhizopus TaxID=4842 RepID=A0A367J3S0_RHIAZ)

HSP 1 Score: 53.9 bits (128), Expect = 2.590e-7
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIKVTIN 114
            RATLL+LDR+ DP++PL+HEFTYQ ++ DLL ++ T N
Sbjct:  128 RATLLILDRSIDPVAPLLHEFTYQAMINDLLPVQETDN 165
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A1X0S8I2_RHIZD (Sec1-like protein n=2 Tax=Rhizopus microsporus TaxID=58291 RepID=A0A1X0S8I2_RHIZD)

HSP 1 Score: 53.9 bits (128), Expect = 2.590e-7
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIKVTIN 114
            RATLL+LDR+ DP++PL+HEFTYQ ++ DLL ++ T N
Sbjct:   82 RATLLILDRSIDPVAPLLHEFTYQAMINDLLPVQETDN 119
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A7S3NJ37_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ37_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.530e-7
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    4 ATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIK 102
            AT+L+LDRADDPL+PL+HE+TYQ LV D+L I+
Sbjct:  267 ATVLILDRADDPLTPLLHEYTYQALVHDMLTIQ 299
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BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Match: A0A7R9WGS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGS9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.550e-7
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIK 102
            R+TLLL+DR+DD LSPLMHEFTYQ +V DLL I+
Sbjct:  243 RSTLLLVDRSDDCLSPLMHEFTYQAMVNDLLPIE 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18055.5545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U1_9PHAE1.470e-13100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2EHV9_9STRA1.550e-882.35Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A835YPU4_9STRA2.890e-869.70Sec1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7R9WX81_9STRA4.820e-870.59Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A7S2R8E9_9STRA7.290e-876.47Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1D716_CYCTE2.590e-767.50Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A367J3S0_RHIAZ2.590e-760.53Vacuolar sorting protein VPS33/slp1 (Fragment) n=2... [more]
A0A1X0S8I2_RHIZD2.590e-760.53Sec1-like protein n=2 Tax=Rhizopus microsporus Tax... [more]
A0A7S3NJ37_9STRA3.530e-769.70Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9WGS9_9STRA3.550e-773.53Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18055contigEcto-sp13_S_contig18055:64..177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score70.9
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7FII8
Preferred nameSTXBP1
Model size114
KEGG koko:K14780,ko:K15292,ko:K15300,ko:K15301
KEGG Pathwayko04721,map04721
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000149,GO:0000278,GO:0000281,GO:0000323,GO:0000902,GO:0000904,GO:0000910,GO:0001505,GO:0001775,GO:0001906,GO:0001909,GO:0001956,GO:0002064,GO:0002065,GO:0002066,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002576,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002703,GO:0002705,GO:0002790,GO:0002886,GO:0002888,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005764,GO:0005766,GO:0005773,GO:0005829,GO:0005856,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0006810,GO:0006836,GO:0006887,GO:0006904,GO:0006906,GO:0006928,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006996,GO:0007009,GO:0007049,GO:0007154,GO:0007155,GO:0007267,GO:0007268,GO:0007269,GO:0007271,GO:0007274,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007317,GO:0007399,GO:0007409,GO:0007412,GO:0007417,GO:0007420,GO:0007596,GO:0007599,GO:0008104,GO:0008150,GO:0009268,GO:0009306,GO:0009314,GO:0009416,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009914,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010447,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010807,GO:0010817,GO:0010827,GO:0010829,GO:0010941,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0014048,GO:0014049,GO:0014070,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016082,GO:0016188,GO:0016192,GO:0016323,GO:0016324,GO:0017075,GO:0017156,GO:0017157,GO:0017158,GO:0019897,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019905,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0022607,GO:0022610,GO:0022615,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0023061,GO:0030027,GO:0030030,GO:0030072,GO:0030073,GO:0030139,GO:0030141,GO:0030154,GO:0030168,GO:0030182,GO:0030348,GO:0030424,GO:0030427,GO:0030659,GO:0030667,GO:0030707,GO:0030855,GO:0031090,GO:0031091,GO:0031175,GO:0031252,GO:0031333,GO:0031338,GO:0031339,GO:0031340,GO:0031344,GO:0031346,GO:0031410,GO:0031629,GO:0031630,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032229,GO:0032355,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032879,GO:0032890,GO:0032892,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033003,GO:0033005,GO:0033006,GO:0033008,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0033993,GO:0034097,GO:0034109,GO:0034341,GO:0034613,GO:0034622,GO:0034762,GO:0034763,GO:0035542,GO:0035544,GO:0036230,GO:0040011,GO:0042060,GO:0042119,GO:0042221,GO:0042581,GO:0042582,GO:0042588,GO:0042589,GO:0042734,GO:0042763,GO:0042764,GO:0042802,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043269,GO:0043270,GO:0043274,GO:0043299,GO:0043300,GO:0043302,GO:0043304,GO:0043306,GO:0043312,GO:0043434,GO:0043523,GO:0043524,GO:0043679,GO:0043900,GO:0043933,GO:0044070,GO:0044085,GO:0044087,GO:0044194,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0045026,GO:0045055,GO:0045087,GO:0045177,GO:0045184,GO:0045202,GO:0045321,GO:0045335,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045920,GO:0045921,GO:0045955,GO:0045956,GO:0045995,GO:0046324,GO:0046325,GO:0046879,GO:0046903,GO:0046907,GO:0046928,GO:0047485,GO:0048167,GO:0048278,GO:0048284,GO:0048468,GO:0048471,GO:0048477,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048786,GO:0048787,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050773,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050804,GO:0050805,GO:0050806,GO:0050817,GO:0050821,GO:0050865,GO:0050867,GO:0050878,GO:0050896,GO:0051046,GO:0051047,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051259,GO:0051291,GO:0051301,GO:0051588,GO:0051590,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051952,GO:0051954,GO:0051955,GO:0051957,GO:0051960,GO:0051962,GO:0051966,GO:0051968,GO:0060281,GO:0060284,GO:0060292,GO:0060322,GO:0060341,GO:0060429,GO:0060548,GO:0060627,GO:0061024,GO:0061025,GO:0061564,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070177,GO:0070527,GO:0070727,GO:0070820,GO:0070887,GO:0071214,GO:0071310,GO:0071345,GO:0071346,GO:0071470,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090174,GO:0097060,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098590,GO:0098609,GO:0098693,GO:0098793,GO:0098794,GO:0098805,GO:0098888,GO:0098891,GO:0098916,GO:0099003,GO:0099011,GO:0099177,GO:0099243,GO:0099500,GO:0099503,GO:0099504,GO:0099525,GO:0099536,GO:0099537,GO:0099643,GO:0104004,GO:0106020,GO:0106022,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140029,GO:0140056,GO:0150034,GO:1900006,GO:1900076,GO:1900077,GO:1901214,GO:1901215,GO:1901652,GO:1901698,GO:1901700,GO:1902803,GO:1902875,GO:1903047,GO:1903294,GO:1903296,GO:1903305,GO:1903306,GO:1903307,GO:1903429,GO:1903530,GO:1903531,GO:1903532,GO:1903793,GO:1904580,GO:1905879,GO:1990504,GO:1990778,GO:2000026,GO:2000241,GO:2000300,GO:2001273,GO:2001274
Exons1
EggNOG free text desc.vesicle docking involved in exocytosis
EggNOG OGsCOG5158@1,KOG1300@2759
EC3.6.4.13
Cds size114
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.9277298-CDS-Ecto-sp13_S_contig18055:63..1771681462932.9277298-CDS-Ecto-sp13_S_contig18055:63..177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18055 64..177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18055.5545.1prot_Ecto-sp13_S_contig18055.5545.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18055 64..177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18055.5545.1

>prot_Ecto-sp13_S_contig18055.5545.1 ID=prot_Ecto-sp13_S_contig18055.5545.1|Name=mRNA_Ecto-sp13_S_contig18055.5545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
RATLLLLDRADDPLSPLMHEFTYQCLVEDLLGIKVTIN
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mRNA from alignment at Ecto-sp13_S_contig18055:64..177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18055.5545.1 ID=mRNA_Ecto-sp13_S_contig18055.5545.1|Name=mRNA_Ecto-sp13_S_contig18055.5545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18055:64..177+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGCGACCCTCCTTCTCTTGGACCGTGCGGATGACCCGCTCTCGCCGCT
GATGCACGAGTTCACCTACCAGTGTCTCGTCGAAGACCTCCTCGGCATAA
AGGTGACGATAAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18055:64..177+

>mRNA_Ecto-sp13_S_contig18055.5545.1 ID=mRNA_Ecto-sp13_S_contig18055.5545.1|Name=mRNA_Ecto-sp13_S_contig18055.5545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18055:64..177+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGCGACCCTCCTTCTCTTGGACCGTGCGGATGACCCGCTCTCGCCGCT
GATGCACGAGTTCACCTACCAGTGTCTCGTCGAAGACCTCCTCGGCATAA
AGGTGACGATAAAT
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