mRNA_Ecto-sp13_S_contig1805.5543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1805.5543.1
Unique NamemRNA_Ecto-sp13_S_contig1805.5543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1805.5543.1 vs. uniprot
Match: D7FUR8_ECTSI (Nitrate high affinity transporter n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FUR8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.170e-15
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  211 MSDWKKYDSYDVPIDPKQQDKATMFKLYSFRRPHMR 318
            MSDWKKYDSYDVPIDPKQQDKATMFKLYSFRRPHMR
Sbjct:    1 MSDWKKYDSYDVPIDPKQQDKATMFKLYSFRRPHMR 36
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BLAST of mRNA_Ecto-sp13_S_contig1805.5543.1 vs. uniprot
Match: D7FUS1_ECTSI (Nitrate/nitrite transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUS1_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.500e-13
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:  211 MSDWKKYDSYDVPIDPKQQDKATMFKLYSFRRPHMR 318
            MSDWKKYD+YDVPIDPKQQDKAT  KLYSFRRPHMR
Sbjct:    1 MSDWKKYDTYDVPIDPKQQDKATTLKLYSFRRPHMR 36
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BLAST of mRNA_Ecto-sp13_S_contig1805.5543.1 vs. uniprot
Match: A0A835YQD5_9STRA (Nitrate high affinity transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.360e-7
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:  220 WKKYDSYDVPIDPKQQDKATMFKLYSFRRPHMR 318
            WKKYDSYD+ +DPKQ D+AT FKL +F RPHMR
Sbjct:   11 WKKYDSYDLDVDPKQDDRATEFKLSTFSRPHMR 43
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BLAST of mRNA_Ecto-sp13_S_contig1805.5543.1 vs. uniprot
Match: A0A812ST29_9DINO (Nitrate/nitrite transporter n=2 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812ST29_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 2.070e-6
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  175 RATNSCVRTTPKMS-DWKKYDSYDVPIDPKQQDKATMFKLYSFRRPHMR 318
            +A +  + TT K    WKKY++YD  +DPKQ D+AT  KL SF+RPHMR
Sbjct:   12 KAADGVLPTTNKHEGSWKKYETYDCEVDPKQGDRATKIKLLSFKRPHMR 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1805.5543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUR8_ECTSI3.170e-15100.00Nitrate high affinity transporter n=4 Tax=Ectocarp... [more]
D7FUS1_ECTSI3.500e-1391.67Nitrate/nitrite transporter n=2 Tax=Ectocarpus Tax... [more]
A0A835YQD5_9STRA4.360e-772.73Nitrate high affinity transporter n=2 Tax=Tribonem... [more]
A0A812ST29_9DINO2.070e-653.06Nitrate/nitrite transporter n=2 Tax=Symbiodinium n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1805contigEcto-sp13_S_contig1805:14204..15680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score81.6
Seed ortholog evalue8e-14
Seed eggNOG ortholog2880.D7FUR8
Preferred nameNRT2.2
Model size319
KEGG koko:K02575
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000325,GO:0001101,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007275,GO:0008150,GO:0008509,GO:0009507,GO:0009536,GO:0009628,GO:0009705,GO:0009791,GO:0009987,GO:0010035,GO:0010167,GO:0015075,GO:0015103,GO:0015112,GO:0015267,GO:0015291,GO:0015318,GO:0015513,GO:0015698,GO:0015706,GO:0015707,GO:0016020,GO:0022622,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022857,GO:0031090,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071229,GO:0071241,GO:0071249,GO:0071705,GO:0071944,GO:0080167,GO:0090696,GO:0098588,GO:0098656,GO:0098805,GO:0099402,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1990351
Exons2
EggNOG free text desc.cellular response to nitrate
EggNOG OGs2QPIC@2759,COG2223@1
Cds size108
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.8132267-UTR-Ecto-sp13_S_contig1805:14203..144131681462932.8132267-UTR-Ecto-sp13_S_contig1805:14203..14413Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1805 14204..14413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.8232806-CDS-Ecto-sp13_S_contig1805:14413..144321681462932.8232806-CDS-Ecto-sp13_S_contig1805:14413..14432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1805 14414..14432 +
1681462932.8309875-CDS-Ecto-sp13_S_contig1805:15591..156801681462932.8309875-CDS-Ecto-sp13_S_contig1805:15591..15680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1805 15592..15680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1805.5543.1prot_Ecto-sp13_S_contig1805.5543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1805 14414..15680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1805.5543.1

>prot_Ecto-sp13_S_contig1805.5543.1 ID=prot_Ecto-sp13_S_contig1805.5543.1|Name=mRNA_Ecto-sp13_S_contig1805.5543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MSDWKKYDSYDVPIDPKQQDKATMFKLYSFRRPHMR
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mRNA from alignment at Ecto-sp13_S_contig1805:14204..15680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1805.5543.1 ID=mRNA_Ecto-sp13_S_contig1805.5543.1|Name=mRNA_Ecto-sp13_S_contig1805.5543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1805:14204..15680+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCGTTCCCGTTTAGGGGGTCATGAGGACTCCTTTTCAAAAACCTTAA
CGGTTGTCTCAGGATACACCAAGCTCCTCCCTCCCCGCTGCCCACTCACT
ATCTCTTGTTCTCCTCTTGTCCCTTTTTCAGAAACAAGAAGTAAACAAAC
TTTTCTTCCTTTCCCCGGCGGCCACGCGCAACAAACAGCTGTGTGCGCAC
TACCCCCAAGATGTCTGACTGGAAGAAATGTGAGTTATGCCCTTGTCTAT
GTGTACCATGGTAGGTGTGGTGACGAGACCGCAGCACGTACTGCAGCGTG
CGGCCCGATCCGTTTGCTCCAGGGCCTTCTTATACGTAACGTGTTACTAC
GACATGGTATATTTTCTTAGCAACAAAGTTCTGTAGCGATGGAATTTGTA
CCACATTCCCACGGTTGTGATGTACCATAGGGTGGTCGAACGAAGCGATA
TAGATTGCCGGGAGATGGACAACGCATTTCTTGAGGCTGGGAATCATGTT
CAGGATTCTCGCCTCACCAACCACCAACAAAGGGCAGAAGAACGTTATCT
ACTGAACTGCTGTAGTCTGAACAGGTAGCACTTAGCACAGCAGTAGTTGG
CTGCAATCGTTGAGTGGGATTAATCGCTACGAATACCCTCTCACGAATGT
ACACGGGCAACGAGAATTTTGCAATGCTCTTTGCATATGTACAGCGCAGG
CGCCAAGTTGTAGGTGCCACCGCTGGTTTATGTACCCTTGGTGCCAAACT
GTAGGTGCCACTGCTGTTAGACTGTCATTGTACAGCAGCGGTGGTCCCGG
TGTAACGCCCGCCGAATAATATCGTTTTCCCCGTATAATGCCGGTGAAAT
CGTGTGGCGCAGATGGGATATTCAAGTTGTTTCATACTCTAGATAATGCT
GGTGCGATCCCGCCGATTTTTAGGTATCAATACCGGGACCACTTCTGTAT
GTGAATTGTGCACCCAGTGGTGTATCAAATTACTGGTCGTGTTGACAAAT
GCCTCGAAGACCCTCAAGCAACAAGTTTTTGGCATGCGGCGACAAGTGCT
CCAAACTGACAGAATCCTCCACACCTCCTGTCTGCAGCACTACTGTAGCA
GCATGGTAGCAGCCTCCAGTCAGTCAACAAAGAAGCTGTAACGGTGCCAA
TCGGTTGCCTACCTCTACATAGCGTACCATCGTGGAATGTCCTGGTAGAT
CTTCGAACGGCAAATGAATCCCCCCAACCCGATTGCCCAACGGGCAACGG
AGAGAAAGAAACCGAGCGGTACGACAGGAAGAACATTCGTTGCACATGAT
CGTGCCTTCCATCCTCGCCCAATCGACCCTCATCCGCCCATCCACCCCCT
GCCCACTCGCTCACTCACGACAACGACTTCACGCACAGACGACAGCTATG
ATGTGCCCATCGATCCCAAGCAGCAGGACAAGGCCACCATGTTCAAGCTC
TATAGCTTCCGGCGCCCCCACATGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1805:14204..15680+

>mRNA_Ecto-sp13_S_contig1805.5543.1 ID=mRNA_Ecto-sp13_S_contig1805.5543.1|Name=mRNA_Ecto-sp13_S_contig1805.5543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1805:14204..15680+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGACTGGAAGAAATACGACAGCTATGATGTGCCCATCGATCCCAA
GCAGCAGGACAAGGCCACCATGTTCAAGCTCTATAGCTTCCGGCGCCCCC
ACATGCGA
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