mRNA_Ecto-sp13_S_contig1805.5542.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: D7FUR7_ECTSI (SET and MYND domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR7_ECTSI) HSP 1 Score: 1066 bits (2758), Expect = 0.000e+0 Identity = 568/630 (90.16%), Postives = 574/630 (91.11%), Query Frame = 2
Query: 248 NCRRCLQPPHLSPRLVPEATPQGGTSPPHPRSCAKCLRSVLCSRCVTAADTAEVGGGGGGCSHGSLECDALVRLSALQREQPGLASSLLGGSTVYLRLLLQLLAMRSRELETNSTTGSAAARAADAMAYLSDMDNLEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKLYCNSMTIGKAGFSAPLAGRGYWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRGPPAPPKRAVRSARSKTGGSGSGTADPFSGGGYSSDTIYRDSRHREEMVSGAWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQLGRMQLGVRPHGGGAQQARCRCVDCGGVTGEAYFDRWTELLRAKQSAADDDLAGGRVREGRRKLADLQVLCERRLSPENSFSLGVHCRQSLAAAVDRDWPTTIAHAERALGCMRRIASEIEG----RGGGGRLPAAAIGRGTCVGEEGDDEIHGGRGSXXXXXXXXXXXXXXXXXDERDGG-SFTAVVVSLECPLLATAIWEAILVEVLDRVLPFAGRHGETETELHRARVAFAERVVGVLGLRRGSLVTLPGES 2122
N RRCLQP HLSPRLVPEATPQGGTSPPHPRSCAKCLRSVLCSRC+TAAD+AEVGG GGGCSHGSLECDALVRLSALQREQP LASSLLGGSTVYLRLLLQLLAMRSREL TNST GSAAARA DA AYLSDMD+LEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKLYCNSMTIGKAGFSAPLAG GYWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTN SGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCR PPAPP+RAVRSARSKTGGSGS TADP SGGGYSSDTIY +SR REEMVSGAWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQL VRPHG GAQQARCRCVDCGGVTGEAYFDRWTELLRAKQ+AADDDLAGGRVREGRRKLADLQVLCERRLSP NSFSLGVHCR SLAAAVDRDWPTTIAHAERALGCMRRIASEIEG L A AI RGTCVGEEG D I GGRGS XXXXXXXXXXXXXXXX SFT VVS ECPLLATAIWEAILVEVLDRVLP AGRH ETELHRARVAFAERVVGVLGLRR SLVTLPGES
Sbjct: 14 NRRRCLQPSHLSPRLVPEATPQGGTSPPHPRSCAKCLRSVLCSRCITAADSAEVGGDGGGCSHGSLECDALVRLSALQREQPDLASSLLGGSTVYLRLLLQLLAMRSRELGTNSTAGSAAARAGDATAYLSDMDDLEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKLYCNSMTIGKAGFSAPLAGWGYWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNRSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRSPPAPPRRAVRSARSKTGGSGSDTADPCSGGGYSSDTIYGESRDREEMVSGAWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQLE-----VRPHGWGAQQARCRCVDCGGVTGEAYFDRWTELLRAKQTAADDDLAGGRVREGRRKLADLQVLCERRLSPHNSFSLGVHCRLSLAAAVDRDWPTTIAHAERALGCMRRIASEIEGGXXXXXXXXXLSAGAIDRGTCVGEEGGDGIRGGRGSDXXXXXXXXXXXXXXXXXXXXXXXSFTTAVVSSECPLLATAIWEAILVEVLDRVLPLAGRH--CETELHRARVAFAERVVGVLGLRRSSLVTLPGES 636
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: A0A6H5JQS4_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS4_9PHAE) HSP 1 Score: 489 bits (1258), Expect = 1.040e-164 Identity = 238/258 (92.25%), Postives = 241/258 (93.41%), Query Frame = 2
Query: 806 MTIGKAGFSAPLAGRGYWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRGPPAPPKRAVRSARSKTGGSGSGTADPFSGGGYSSDTIYRDSRHREEMVSGAWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQLGRMQLGVRPHGGGAQQARCRCVDCGGVTGEAYFDRWTELLRAKQSAADDDLAGGRVREGRRKLADLQV 1579
MTIGKAGFSAPLAGR YWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCR PPAPP+RAVRSA S+TGGSGSGTADP SGGG S DTIY D R REEMVSGAWVCPKR CCG GRVLPPLSTAGRGGAAGGEAQLG QLGV H GGAQQARCRCVDCGGVT EAYFDRWTELLRAKQ+AADDDLAGGRVREGRRKLADLQV
Sbjct: 1 MTIGKAGFSAPLAGRRYWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRSPPAPPRRAVRSAGSRTGGSGSGTADPCSGGGCSIDTIYGDIRDREEMVSGAWVCPKRGCCGKGRVLPPLSTAGRGGAAGGEAQLGGTQLGVWRHRGGAQQARCRCVDCGGVTEEAYFDRWTELLRAKQAAADDDLAGGRVREGRRKLADLQV 258
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: A0A6H5JVN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN9_9PHAE) HSP 1 Score: 176 bits (446), Expect = 1.100e-47 Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 2
Query: 248 NCRRCLQPPHLSPRLVPEATPQGGTSPPHPRSCAKCLRSVLCSRCVTAADTAEVGGGGGGCSHGSLECDALVRLSALQREQPGLASSLLGGSTVYLR 538
N RRCLQP HLSPRL+P+A PQ GTSPPHPRSCAKCLRSVLCSRC+TAA+T EVGG GGGCSHGSLECDALVRLSALQREQP LASSLLGGSTVYLR
Sbjct: 14 NRRRCLQPSHLSPRLMPDAAPQRGTSPPHPRSCAKCLRSVLCSRCITAAETVEVGGDGGGCSHGSLECDALVRLSALQREQPDLASSLLGGSTVYLR 110
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: A0A6H5KQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ9_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.350e-32 Identity = 67/76 (88.16%), Postives = 68/76 (89.47%), Query Frame = 2
Query: 1895 DGGSFTAVVVSLECPLLATAIWEAILVEVLDRVLPFAGRHGETETELHRARVAFAERVVGVLGLRRGSLVTLPGES 2122
DGGSFT +VS ECPLLAT IWEAILVEVLDRVLP AGRH ETETE HRARVAFAERVVGVLGLRR SLVTLPGES
Sbjct: 51 DGGSFTTAMVSSECPLLATGIWEAILVEVLDRVLPLAGRHCETETEAHRARVAFAERVVGVLGLRRSSLVTLPGES 126
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: A0A7S1AGI2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AGI2_NOCSC) HSP 1 Score: 81.3 bits (199), Expect = 1.640e-12 Identity = 98/341 (28.74%), Postives = 146/341 (42.82%), Query Frame = 2
Query: 173 IRAGTAVLQGARPMVWALKDEHEGRNCRRCLQPPHLSPRLVPEATPQGGTSPPHPRSCAKCLRSVLCSRCVTAADTAEVGGGGGGCSHGSLECDALVRLSALQREQP---GLAS-SLLGGSTVYLRLLLQLLAMRSRELETNSTT--------GSAAARAADAMAYLS--DMDNLEDHLDDLLDG-------GEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKLYCNSMTIGKAGFSAPLAGRGYWSGIRGCLYS------DFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRC 1114
+ AG VL+ A P+ AL D + C RC P G P +C ++ CS C ++D G EC A V+L+ R+ GL S S G +T +LRL ++LL++R+R + G A + + + S D++ L D+ L+ G +E G + A RL++ + +A+ D L ++ N+MT+ AP A +R L S DFG+GLYP+GAM NHSC P+C W SG L V + V G +L I+Y+ + R+ L F F C C C
Sbjct: 25 VSAGETVLRCA-PIAAALHDRDVPKRCSRCF-------------APTDGV----PCTC----HAIFCSTCAKSSDAKREHRG---------ECMA-VKLALSDRKTRNALGLKSKSSTGTATTFLRLAVRLLSVRARHSRSKPVLLLGDPDGDGEWIPSADEDVIHDSWEDVEELSPETDEALEALLARLQKGRVEELEGG-VNAVRLLSGSR-RASWDDVFRLLCRISMNAMTL------APEAQ------VRRALTSSKSRWKDFGIGLYPSGAMLNHSCFPSCLWFVR-SGTLIVETLRVVRRGEELTIAYLPVSGTVTQRRRRLLHAFGFHCVCSHC 318
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: A0A024GDU2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDU2_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 3.340e-12 Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 2
Query: 866 IRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVV-AVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRC-CRGP 1126
I L G+GLYP AM NHSC PNC R + + + V+ ++ + +G +L ISYVD+ P P+R++LLR +FF+C C RC C P
Sbjct: 217 ICNTLNEPLGIGLYPKAAMLNHSCAPNCIVRFDLNSKQAVIQTIDKILSGQELTISYVDVFLPTPLRKNLLRSSYFFDCLCERCNCNAP 305
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: A0A7S1U4L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4L7_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.030e-10 Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 2
Query: 887 DFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVD-ILQPWPVRQDLLRCHFFFECACPRCCRGPPAPPKRAVR 1153
GVGL+P GA+FNHSC P + + SG + V V V G +L +Y D ++Q P R LR +FF C CPRC + PK + +
Sbjct: 54 SMGVGLFPTGAVFNHSCVPALDYLVDPSGRMQFVTVRPVRRGEELTTTYTDLVMQSTPQRIAALRQEYFFTCVCPRCSLAETSNPKSSAK 143
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: A0A3Q3G641_9LABR (Histone-lysine N-methyltransferase Smyd1-like n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3G641_9LABR) HSP 1 Score: 73.2 bits (178), Expect = 9.530e-10 Identity = 52/162 (32.10%), Postives = 77/162 (47.53%), Query Frame = 2
Query: 629 AYLSDMDNLEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKLYCNSMTIGKAGFSAPLAGRGYWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRC 1114
+ L +D LEDH+ DL + +++ N + K + + S G + CN T+ S RG GVGL+P + NH C PNC+ N +G++ + AVE +P G +L +SYVD L RQ L+ +FFFEC+C C
Sbjct: 124 SQLVSVDQLEDHVSDLSEE-DLKQMKTNVQSFQEYWSYGRKKHSAEEISHIFGIIKCNGFTL---------------SDQRGL--QAVGVGLFPNLCLVNHDCWPNCTVILN-NGKIELRAVEKIPEGQELTVSYVDFLNLSADRQKKLKENFFFECSCEHC 266
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: UPI000E6F519B (histone-lysine N-methyltransferase ASHR1-like isoform X2 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F519B) HSP 1 Score: 72.8 bits (177), Expect = 1.030e-9 Identity = 68/232 (29.31%), Postives = 100/232 (43.10%), Query Frame = 2
Query: 443 LECDALVRLSALQREQPGLASSLLGGSTVYLRLLLQLLAMRSRELETNSTTGSAAARAADAMAYLSDMDNLEDHLDDLLDGGEME----ARMGNTIGAARLVAPAAW-KANQDVCSEFLGKLYCNSMTIGKAGFSAPLAGRGYWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRG 1123
+EC AL RLS +R+ SL + +RL L+ R +T +T A L DH+ D+ GE + A+M N + W +N ++ KL CN+ TI S +R G GLYP ++ NHSC PN G + V AVE +P G+++FI+YV+ + RQ L+ +FF C+CP C +G
Sbjct: 90 IECQALARLSKERRK------SLTPSLRLMVRLYLKRKLQNERVFQTTATDNYNLVEA------------LVDHMSDI---GEKQLVLYAQMANLVNLI-----LEWPNSNIKEIAQNFSKLACNAHTICD-------------SELR-----PLGTGLYPVISIINHSCSPNAVLVFEGRRAV-VRAVELIPQGTEVFITYVETAESTAARQKALKEQYFFTCSCPCCKKG 276
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Match: A0A4Y7J3F6_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7J3F6_PAPSO) HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9 Identity = 68/232 (29.31%), Postives = 100/232 (43.10%), Query Frame = 2
Query: 443 LECDALVRLSALQREQPGLASSLLGGSTVYLRLLLQLLAMRSRELETNSTTGSAAARAADAMAYLSDMDNLEDHLDDLLDGGEME----ARMGNTIGAARLVAPAAW-KANQDVCSEFLGKLYCNSMTIGKAGFSAPLAGRGYWSGIRGCLYSDFGVGLYPAGAMFNHSCRPNCSWRTNGSGELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRG 1123
+EC AL RLS +R+ SL + +RL L+ R +T +T A L DH+ D+ GE + A+M N + W +N ++ KL CN+ TI S +R G GLYP ++ NHSC PN G + V AVE +P G+++FI+YV+ + RQ L+ +FF C+CP C +G
Sbjct: 90 IECQALARLSKERRK------SLTPSLRLMVRLYLKRKLQNERVFQTTATDNYNLVEA------------LVDHMSDI---GEKQLVLYAQMANLVNLI-----LEWPNSNIKEIAQNFSKLACNAHTICD-------------SELR-----PLGTGLYPVISIINHSCSPNAVLVFEGRRAV-VRAVELIPQGTEVFITYVETAESTAARQKALKEQYFFTCSCPCCKKG 276 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1805.5542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1805.5542.1 >prot_Ecto-sp13_S_contig1805.5542.1 ID=prot_Ecto-sp13_S_contig1805.5542.1|Name=mRNA_Ecto-sp13_S_contig1805.5542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=681bp MMSLASTVEVRTAGAAGNGCFATSRPGGGLIRAGTAVLQGARPMVWALKDback to top mRNA from alignment at Ecto-sp13_S_contig1805:3220..12543+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1805.5542.1 ID=mRNA_Ecto-sp13_S_contig1805.5542.1|Name=mRNA_Ecto-sp13_S_contig1805.5542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1805:3220..12543+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1805:3220..12543+ >mRNA_Ecto-sp13_S_contig1805.5542.1 ID=mRNA_Ecto-sp13_S_contig1805.5542.1|Name=mRNA_Ecto-sp13_S_contig1805.5542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2043bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1805:3220..12543+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |