mRNA_Ecto-sp13_S_contig18047.5540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18047.5540.1
Unique NamemRNA_Ecto-sp13_S_contig18047.5540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: D8LCB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCB5_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 3.770e-148
Identity = 203/208 (97.60%), Postives = 205/208 (98.56%), Query Frame = 1
Query:  112 MEKFEIPVVDLSGWVGGTQGNGDDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNSAGTV 735
            ME FEIPVVDLSGWVGG QGNGDDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFE+WSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPT GSNFDKF+SAGTV
Sbjct:    1 METFEIPVVDLSGWVGGAQGNGDDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFENWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPT-GSNFDKFDSAGTV 207          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: A0A3R6Y8Z9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Y8Z9_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.420e-72
Identity = 106/204 (51.96%), Postives = 147/204 (72.06%), Query Frame = 1
Query:  124 EIPVVDLSGWVGGTQGNGDD----CRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNS 723
            ++PVVDL+ ++G T     D    C K+AE LH FG+++VRDPR +E DNN+FLD ME+Y+ ++D V+DARPE+SYQVGVTPE  E+ R HC R   L   HRP+TLCPPE D K RFFW  GPRP  +++ +LN  PVVP+ F  W  +M+ WGNKM+ A+  + ++ A+GLGL+++A +  M+  PHLLAPT GSNF+K+++
Sbjct:    8 DLPVVDLAKFIGVTDVKAADVVAECNKVAECLHKFGVLVVRDPRATEADNNRFLDLMERYFERTDFVEDARPEYSYQVGVTPEQQEKARNHCTRAEGLAKEHRPITLCPPELDKKSRFFWRAGPRPENSQFTELNAEPVVPKAFPEWEEVMNMWGNKMLAAIHEIVQMAALGLGLEQDAFARHMNVAPHLLAPT-GSNFNKYHT 210          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: W4FIL1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIL1_9STRA)

HSP 1 Score: 230 bits (586), Expect = 4.170e-72
Identity = 104/208 (50.00%), Postives = 146/208 (70.19%), Query Frame = 1
Query:  124 EIPVVDLSGWVGGTQGNG----DDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNSAGTV 735
            ++PV+DL+ ++G          D+C K+AE LH +G+++VRDPR +E DNN FLD ME+Y+  +D ++DARPE+S+QVGVTPE  E+ R HC R   L   H+P+TLCPPE D K RFFW  GPRP  +++ +LN  PVVP+ F  W  +M+ WGNKM+ A+  + ++ A+GLGL+++A S+LM   PHLLAPT GSNF K+N+   V
Sbjct:    7 DLPVIDLTKFIGAADLTAADVVDECNKVAECLHKYGVLVVRDPRATEADNNLFLDLMERYFEHTDFIEDARPEYSFQVGVTPEQQEKARNHCTRAEGLAKEHQPVTLCPPELDKKSRFFWRAGPRPENSQFTELNAEPVVPKAFPEWEDVMNMWGNKMLAAIHEIVQMAALGLGLEKDAFSSLMTVAPHLLAPT-GSNFSKYNTLNDV 213          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: A0A024TIV5_9STRA (2OG-FeII_Oxy domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TIV5_9STRA)

HSP 1 Score: 231 bits (589), Expect = 2.300e-71
Identity = 106/204 (51.96%), Postives = 147/204 (72.06%), Query Frame = 1
Query:  124 EIPVVDLSGWVGGTQGNGDD----CRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNS 723
            ++PVVDL+ ++G T     D    C K+AE LH FG+++VRDPR +E DNN+FLD ME+Y+ ++D V+DARPE+SYQVGVTPE  E+ R HC R   L   HRP+TLCPPE D K RFFW  GPRP  +++ +LN  PVVP+ F  W  +M+ WGNKM+ A+  + ++ A+GLGL+++A +  M+  PHLLAPT GSNF+K+++
Sbjct:    8 DLPVVDLAKFIGVTDVKAADVVAECNKVAECLHKFGVLVVRDPRATEADNNRFLDLMERYFERTDFVEDARPEYSYQVGVTPEQQEKARNHCTRAEGLAKEHRPITLCPPELDKKSRFFWRAGPRPENSQFTELNAEPVVPKAFPEWEEVMNMWGNKMLAAIHEIVQMAALGLGLEQDAFARHMNVAPHLLAPT-GSNFNKYHT 210          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: W4FGD8_9STRA (2OG-FeII_Oxy domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGD8_9STRA)

HSP 1 Score: 230 bits (586), Expect = 5.960e-71
Identity = 104/208 (50.00%), Postives = 146/208 (70.19%), Query Frame = 1
Query:  124 EIPVVDLSGWVGGTQGNG----DDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNSAGTV 735
            ++PV+DL+ ++G          D+C K+AE LH +G+++VRDPR +E DNN FLD ME+Y+  +D ++DARPE+S+QVGVTPE  E+ R HC R   L   H+P+TLCPPE D K RFFW  GPRP  +++ +LN  PVVP+ F  W  +M+ WGNKM+ A+  + ++ A+GLGL+++A S+LM   PHLLAPT GSNF K+N+   V
Sbjct:    7 DLPVIDLTKFIGAADLTAADVVDECNKVAECLHKYGVLVVRDPRATEADNNLFLDLMERYFEHTDFIEDARPEYSFQVGVTPEQQEKARNHCTRAEGLAKEHQPVTLCPPELDKKSRFFWRAGPRPENSQFTELNAEPVVPKAFPEWEDVMNMWGNKMLAAIHEIVQMAALGLGLEKDAFSSLMTVAPHLLAPT-GSNFSKYNTLNDV 213          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: A0A1V9YYT8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYT8_9STRA)

HSP 1 Score: 233 bits (593), Expect = 4.110e-70
Identity = 105/204 (51.47%), Postives = 142/204 (69.61%), Query Frame = 1
Query:  124 EIPVVDLSGWVGGTQGNGDDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNSAGTV 735
            ++PV+DL+ ++   +  GD CR +AE L+ +G+++VRDPR +E DNN F+D ME+Y+ Q+D  +DARPE+SYQVGVTPE  ER R HC R   L + HRP+TLCPPE D K RFFW  GPRP  T++ +LN  PV+P+ F  W   MD WGNKM+ A+  +  + AIGL L+++A    M  GPHLLAPT GSNF+K+ +   V
Sbjct:  267 DLPVIDLAKYMANREQGGDQCRVVAECLYKYGVLVVRDPRATEDDNNTFVDMMERYFEQTDFKQDARPEYSYQVGVTPEHLERARNHCNRAETLDEAHRPVTLCPPELDKKSRFFWRTGPRPPKTQFTELNAEPVIPKAFPEWENTMDMWGNKMLAAVHELVEMAAIGLRLEKDAFQKRMTYGPHLLAPT-GSNFNKYGNLNDV 469          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: A0A485KKI3_9STRA (Aste57867_8531 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKI3_9STRA)

HSP 1 Score: 225 bits (574), Expect = 3.700e-69
Identity = 103/208 (49.52%), Postives = 146/208 (70.19%), Query Frame = 1
Query:  124 EIPVVDLSGWVGGTQGNG----DDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNSAGTV 735
            ++PV+DL  ++     N     D+C+K+A+ LH +G+++VRDPR +E DN +FLD ME+Y+  +D V+DARPE+S+QVGVTPE  E+ R HC R   L + HRP+TLCPPE D K RFFW +GPRP  T++ +LN  PVVP+ F  W  IM+ WG+KM+ A+  + ++ A+GLGL+++A S  M   PHLLAPT GSNF+K+ +   V
Sbjct:    6 DLPVIDLEKFMNAADVNNQDVVDECKKVADCLHKYGVLVVRDPRATEADNGRFLDLMERYFEHTDFVQDARPEYSFQVGVTPEEQEKARNHCTRAEHLEEVHRPVTLCPPELDKKSRFFWRMGPRPENTQFTELNAEPVVPKEFPEWEEIMNMWGDKMLAAIHEIVQMAALGLGLEKDAFSKRMTYAPHLLAPT-GSNFNKYATRNDV 212          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: A0A067CZA4_SAPPC (2OG-FeII_Oxy domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZA4_SAPPC)

HSP 1 Score: 224 bits (572), Expect = 6.790e-69
Identity = 103/204 (50.49%), Postives = 136/204 (66.67%), Query Frame = 1
Query:  124 EIPVVDLSGWVGGTQGNGDDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNSAGTV 735
            ++PV+DL+ ++       D C  +A+ LH +G+++VRDPR +E DNN F+D ME+Y+ Q+D  +DARPE SYQVGVTPE  ER R HC R   L   H+P+TLCPPE D K RFFW  GPRP  T++ +LN  PVVP  F  W   MD WG+KM+ A+  +  + AIGLGL+++A    M  GPHLLAPT GSNF K+ +   V
Sbjct:    6 DLPVIDLAKYMADRANGIDQCNVVADCLHKYGVLVVRDPRATEADNNTFVDMMERYFEQTDFTQDARPELSYQVGVTPEHQERARNHCSRAEALAKEHQPVTLCPPELDKKSRFFWRTGPRPPTTQFTELNAEPVVPAAFPEWVPTMDMWGSKMLAAVHELVEMAAIGLGLEKDAFQKRMQYGPHLLAPT-GSNFAKYGNLNDV 208          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: A0A7S0XDN5_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDN5_9STRA)

HSP 1 Score: 221 bits (564), Expect = 6.100e-68
Identity = 94/185 (50.81%), Postives = 139/185 (75.14%), Query Frame = 1
Query:  181 DCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNSAGTV 735
            +C+K+AEA H +G+ +V+DPRV+E +N+ FL+ ME+Y+ QS+G+ DARP+ SYQVGVTPE TE+PR +C +I  +    +PL+ CPPE DPKWRFFW +G  P  TK++QLN  PV+P+ F  W+ +M+ WGNKM+ AL T++ + A+G  + +++ ++LM +GPHLLAPT GS+F+K+    TV
Sbjct:   13 ECKKVAEAFHKYGVCIVKDPRVNESNNSTFLNMMEQYFEQSNGIDDARPDLSYQVGVTPERTEKPRDYCSKIGSIGPDDKPLSPCPPELDPKWRFFWRVGEPPKSTKFKQLNAEPVIPKNFPQWTEVMNMWGNKMLDALLTIAEMAAVGFNIPKDSFTSLMADGPHLLAPT-GSDFNKYGQLNTV 196          
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Match: A0A6G0W8E9_9STRA (2OG-FeII_Oxy domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8E9_9STRA)

HSP 1 Score: 222 bits (566), Expect = 6.260e-68
Identity = 101/204 (49.51%), Postives = 144/204 (70.59%), Query Frame = 1
Query:  124 EIPVVDLSGWVGGTQGNGDD----CRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNS 723
            ++PV+DL  ++        D    C+K+A+ L+ +G+++VRDPR +E DN +FLD ME+Y+  +D V+DARPE+SYQVGVTPE  E+ R HC R   L +G+RP+TLCPPE D K RFFW +G RP  T++ +LN  PV+P  F  W  +M+ WGNKM+ A+  + ++ AIGLGL+++A S  M  GPHLLAPT GSNF+K+++
Sbjct:    7 DLPVIDLEKFMRAPDATSADVVEECKKVADCLYKYGVLVVRDPRATEADNGRFLDLMERYFEHTDFVQDARPEYSYQVGVTPERQEKARNHCARAETLSEGNRPVTLCPPELDKKSRFFWRMGSRPEKTQFTELNAEPVIPAAFPEWEEVMNMWGNKMLDAIHEIVQMAAIGLGLEKDAFSKRMTFGPHLLAPT-GSNFNKYSN 209          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18047.5540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB5_ECTSI3.770e-14897.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3R6Y8Z9_9STRA1.420e-7251.96Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FIL1_9STRA4.170e-7250.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TIV5_9STRA2.300e-7151.962OG-FeII_Oxy domain-containing protein n=2 Tax=Aph... [more]
W4FGD8_9STRA5.960e-7150.002OG-FeII_Oxy domain-containing protein n=6 Tax=Aph... [more]
A0A1V9YYT8_9STRA4.110e-7051.47Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A485KKI3_9STRA3.700e-6949.52Aste57867_8531 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067CZA4_SAPPC6.790e-6950.492OG-FeII_Oxy domain-containing protein n=3 Tax=Sap... [more]
A0A7S0XDN5_9STRA6.100e-6850.81Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6G0W8E9_9STRA6.260e-6849.512OG-FeII_Oxy domain-containing protein n=1 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18047contigEcto-sp13_S_contig18047:2..3207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score428.3
Seed ortholog evalue2.4e-117
Seed eggNOG ortholog2880.D8LCB5
Model size735
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.dioxygenase activity
EggNOG OGs2QR0G@2759,COG3491@1
Cds size735
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18047.5540.1prot_Ecto-sp13_S_contig18047.5540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18047 2..3207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.539034-CDS-Ecto-sp13_S_contig18047:1..421681462932.539034-CDS-Ecto-sp13_S_contig18047:1..42Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18047 2..42 -
1681462932.5543973-CDS-Ecto-sp13_S_contig18047:431..5431681462932.5543973-CDS-Ecto-sp13_S_contig18047:431..543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18047 432..543 -
1681462932.5659487-CDS-Ecto-sp13_S_contig18047:898..10031681462932.5659487-CDS-Ecto-sp13_S_contig18047:898..1003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18047 899..1003 -
1681462932.5750356-CDS-Ecto-sp13_S_contig18047:1429..15761681462932.5750356-CDS-Ecto-sp13_S_contig18047:1429..1576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18047 1430..1576 -
1681462932.583713-CDS-Ecto-sp13_S_contig18047:1992..21121681462932.583713-CDS-Ecto-sp13_S_contig18047:1992..2112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18047 1993..2112 -
1681462932.5929081-CDS-Ecto-sp13_S_contig18047:2977..31351681462932.5929081-CDS-Ecto-sp13_S_contig18047:2977..3135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18047 2978..3135 -
1681462932.602171-CDS-Ecto-sp13_S_contig18047:3155..32071681462932.602171-CDS-Ecto-sp13_S_contig18047:3155..3207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18047 3156..3207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18047.5540.1

>prot_Ecto-sp13_S_contig18047.5540.1 ID=prot_Ecto-sp13_S_contig18047.5540.1|Name=mRNA_Ecto-sp13_S_contig18047.5540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
PPLADSALPPSHLQQVQIHSSSVPQHCNANLSRFTLPMEKFEIPVVDLSG
WVGGTQGNGDDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQ
SDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEAD
PKWRFFWTIGPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALE
TVSRLCAIGLGLDEEAISTLMHEGPHLLAPTAGSNFDKFNSAGTV
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mRNA from alignment at Ecto-sp13_S_contig18047:2..3207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18047.5540.1 ID=mRNA_Ecto-sp13_S_contig18047.5540.1|Name=mRNA_Ecto-sp13_S_contig18047.5540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18047:2..3207- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCCTCGCTGATTCCGCGCTGCCCCCGTCGCATCTGCAGCAAGTTCA GAGTTGCGCCGCACTCACTTAGTACATAGCAGCTCCGTACCACAGCACTG CAACGCAAACCTATCCAGATTCACGCTTCCCATGGAAAAATTTGAGATTC CAGTGGTGGATCTCTCGGGATGGGTAGGGGGCACGCAAGGCAATGGGGAT GACTGCCGCAAGTTGGCAGAAGCACTTCATGTGAGGAGGCGATATATTTT TCGTGGATTTTTGTGCAACTAATTTGACAACTTCTGAGTTAGTGACGGCA CCGGCACCGGACCATCCATGCGCGATGCTGGACATGTGCACATAGTCTTC ATTACACTGGTAGCTTATGCGATTTGCTGTCGTACACAACTTCCCGCCAG AAAGTTAGTCGATGGTTCCAAGCAATATGCCATACGACTATGCTCTGCCA AATATCTGACTGCGTGCGAGCGACAATAATATCGGGACTGGCTCTAAGTG GTGAATTTGACCGCTTTCGTGAGAAATCAGTTTATGAGGGAATAGAACAT GGAGGGGATATGCATACGCAGACCTCCAACCCCAACCCACTTCCCCAATG GCATGCTTCATCCAACATGTTTATTTAATAGAAAAATCCTTCGAAGGCTT CTTCCGTATGTCCCATGGACTCCGCGTTGCAGTGCAAAGGTCGTCTGACT TGCCCACAGCTGGTTTCTTCACATGTTTCATGTTTCTCTGCGTCTCTGAA ATGGACACCCCACCACACGTGTTGTGTAAACGGCCCAGACCCGACAAGTC TCATGGGCGAAGTTATGATAGCTTGTTCAGATCCTGTATTCCTGGTATTC GTTTTGACTGTACATACACACACAATGGACTGCGCTGATCTGTCCCAAGG TGCTTTCCCTCACCCTCTGACGCACAAGTCCAGATTGACCGTAAGTCAAC GCTGTTACACTTTAACTTGACGCACAGTCCAGACTGACAGGCTGTACAAT CAATGCTGTGTCGCCGCTACTCCCGATACTTGAGCCGAGGGTGCCCTCTC CCGCCCTTCCATGCACCCTTCCATGCACCGACGCACACAAAATAGGCGTT TGGAATTGTCCTCGTCCGAGACCCGAGGGTATCTGAGGTAGACAACAATC AGTTTCTCGACCAGATGGAGAAGTACTACGCCCAGAGCGACGGTGTCAAG GATGCAAGGCCAGAGGTGTGTGTGTATGTGTGTGTGTTTCGATATGTGGT GCGCCCAGTATTATTTGCGCTGGCTATACCACCACGTTGATATTGCGGAG AACCGCAAGTAGCAGCTTTCTTCGTGTACTACGATCAGGTGGTTGGTGGT TGGTTGCTCTTAATCAAAAGGGTCGGTTTGTATTGAGCAGGCTACGGGAG TGCAGGTATTCTGCTGAGGTGAAGCAGATGTTGAGTATCTTGCATGAAGC TCTGCGGGTTTCACCATCTTGGTGGGGTTTGATAGGCCCTTTTGCCGGTC AAGTCAGTGTCCTCTCGAGCCATGACCAGCAAAGCAACGAAGCTGTTTCT TGTTACGGATGTCATGACACGATCCGCCGGCCGTTTTGCCCACGCCTCCC CTCCCACTTCGCCTGGAACAAAATCGGCAAGTTTTCCTACCAAGTTGGCG TTACACCTGAGGGCACGGAGCGGCCACGCGCGCATTGCGAGCGCATCAGT CAGTTGCCGGACGGACATCGACCGTTGACTCTGTGTCCCCCTGAGGCTGA CCCAAAGTGGCGGTTCTTCTGGACGATTGTGAGGCGTGAGATGTCGGCTC ATTCCGACCAGCGGGGTCTGACACCGTCATCATGTGTGTGCACCTTACCC GCTGTTTTGAAGCGTGCATTTTGGTTCGCGCCTGCGCATGGCTCCGTAGT ATGTCACACCCCAGGCTTCTGTTGCAGAAAGCTGCGTCTGTATTTTCTCC ATTCGGGACACTCGTCTACATGATCTGCCGCATGACTCTAGCGGACCGAG CACTGAATCATGGTCTAATTTCGCACCCATCCCAACTATATCCGGTTGGT TGGATGGAACGATTTGGGCACGCCGAAACAACCGTATCAGCCTGGCAACG TCGTGCACGGTGTCGTGCTCGCAGCCGGCGCAACCTCCTCTCTACTGGTG GAAAGCTCGGCAGAACTGACTCCCCGTAACCATTCATTGTTTGCGCGAGC GCAGGGTCCGCGGCCCGCCGTGACAAAGTACCAGCAGCTCAACCCCCCGC CCGTCGTGCCAGAAGGCTTCGAGAGTTGGTCTACGATCATGGACGCGTGG GGAAACAAGGTGCGTTTGCGCGATGAATTCACAAGCATTTGCAGTTTTAC AGGTTTTGACTCCCGCTTCTTGTCCATCCAGGCACCGCGGTTAACTCGTT GGCAACGAAAATGATGAACACCCAAATTCTATTCTTTGCGATCTGCATCA AACACGTTCGTTGTCAACGCCATACCGGGTAGGGGAAACGCGTGCTCTAT CAGCCGATTTAGCCGGGCCTGCTGTGTGTCGAATTTGTGCGTTTTTGGTC ATCACTACTATGATTTTGCTGTTTACGGGCGTCTCGTGTTGGGTGCATGT GGGTTTCGTCACGGTGTTGGTTGGTTGATTGCTGATACGCGATGCGTCTC CACCATGCCATCAGATGATTGGCGCGCTGGAGACGGTCTCGCGGCTGTGC GCTATTGGTCTCGGGCTAGACGAGGAAGCTATTTCAACTCTCATGCACGA GGGCCCGCATCTCCTGGCCCCCACTGGTGAGCGAGTGCATGTTTTTCAAC GTTTTCTGGCTTAGCATATTAGAAAAAACAACGCTGACAAAAATGAAGGC GGCAAGCACCGCAGGAGGAAATGTGGAGGACGCTTCCAGTGTGACCCCGG CTGGCGTGTCAAAGACATTTCGACAGGTGTACGCAAGCTCCCAGAACAGA TGGATCGACAAAAAAACGAACACTGCCCTTTCATGAATGCGCTGCTTCTA GTCCCAAGTCACATGCGGTACCGCGACATTTGACAGCCCCGGAACTCTTA CTAGACCGGCATCCTAAAGGAGTGATAAGCAGCGGCTCTGATTGTTTGAC ACGAACGGTTCCCACGTCATGTTTTCCGGCGAATCCTTGACTCTTCTGTT CGTCCGTTCTGCGAGCAGGCTCAAACTTCGACAAGTTCAATTCAGCGGGC ACTGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18047:2..3207-

>mRNA_Ecto-sp13_S_contig18047.5540.1 ID=mRNA_Ecto-sp13_S_contig18047.5540.1|Name=mRNA_Ecto-sp13_S_contig18047.5540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18047:2..3207- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCCTCGCTGATTCCGCGCTGCCCCCGTCGCATCTGCAGCAAGTTCA
GATACATAGCAGCTCCGTACCACAGCACTGCAACGCAAACCTATCCAGAT
TCACGCTTCCCATGGAAAAATTTGAGATTCCAGTGGTGGATCTCTCGGGA
TGGGTAGGGGGCACGCAAGGCAATGGGGATGACTGCCGCAAGTTGGCAGA
AGCACTTCATGCGTTTGGAATTGTCCTCGTCCGAGACCCGAGGGTATCTG
AGGTAGACAACAATCAGTTTCTCGACCAGATGGAGAAGTACTACGCCCAG
AGCGACGGTGTCAAGGATGCAAGGCCAGAGTTTTCCTACCAAGTTGGCGT
TACACCTGAGGGCACGGAGCGGCCACGCGCGCATTGCGAGCGCATCAGTC
AGTTGCCGGACGGACATCGACCGTTGACTCTGTGTCCCCCTGAGGCTGAC
CCAAAGTGGCGGTTCTTCTGGACGATTGGTCCGCGGCCCGCCGTGACAAA
GTACCAGCAGCTCAACCCCCCGCCCGTCGTGCCAGAAGGCTTCGAGAGTT
GGTCTACGATCATGGACGCGTGGGGAAACAAGATGATTGGCGCGCTGGAG
ACGGTCTCGCGGCTGTGCGCTATTGGTCTCGGGCTAGACGAGGAAGCTAT
TTCAACTCTCATGCACGAGGGCCCGCATCTCCTGGCCCCCACTGCAGGCT
CAAACTTCGACAAGTTCAATTCAGCGGGCACTGTC
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