mRNA_Ecto-sp13_S_contig18041.5537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18041.5537.1
Unique NamemRNA_Ecto-sp13_S_contig18041.5537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: D7G9I3_ECTSI (Mercuric reductase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I3_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 1.050e-144
Identity = 210/220 (95.45%), Postives = 211/220 (95.91%), Query Frame = 1
Query:    1 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQVSQRPIFFLE 660
            VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHE PKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPK+GVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQ        LE
Sbjct:   90 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHEDPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKDGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQFDDNDRAILE 309          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: B7ZGN8_9PHAE (Mercuric reductase A (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN8_9PHAE)

HSP 1 Score: 366 bits (939), Expect = 3.870e-124
Identity = 178/220 (80.91%), Postives = 199/220 (90.45%), Query Frame = 1
Query:    1 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQVSQRPIFFLE 660
            VVIGGGPIGLELAQAMQRFGS+VTVLIRSG IMPKEDDDARAIV ESL+ DG++L F+LKF+RVEH++P  E DFP I++ VEQ+G EK+ ECEALLVATGRKPNV+NVGLEKAG+E+N K+GVKVNDQLQT+NK++YAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEA KIA+DTYTK+        LE
Sbjct:   94 VVIGGGPIGLELAQAMQRFGSQVTVLIRSGQIMPKEDDDARAIVKESLINDGMDLLFNLKFIRVEHDAPANEDDFPTIRVVVEQNGVEKIVECEALLVATGRKPNVNNVGLEKAGIEYNAKDGVKVNDQLQTSNKAVYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEANKIAFDTYTKEFDDNDRTILE 313          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: A0A836CF07_9STRA (Mercuric reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF07_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.040e-88
Identity = 133/209 (63.64%), Postives = 169/209 (80.86%), Query Frame = 1
Query:    1 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTK 627
            +V+GGGPIG+ELAQAM RFG++VTV++R   IMPKED DA  IV  ++ +DG+   ++LKF+RVEH     E  FP I++  E  G E VFE EALLVA GR+PNV+N+GLE AG++F+P +G+ V+D LQTTNK+IYAVGDCCTK+QFTH +DFMAR+ IRNALFFG  KFS+LLIPWAT+TEPEVAHVGLYPRD+EA+ + Y T+T+
Sbjct:  341 LVLGGGPIGMELAQAMARFGAQVTVVLRGSKIMPKEDSDAADIVAAAMERDGVKFHYNLKFVRVEHTQADGEA-FPTIRMIAEDKGTEVVFEAEALLVAAGRRPNVTNMGLEDAGIKFSPTDGIVVSDTLQTTNKAIYAVGDCCTKYQFTHVSDFMARLAIRNALFFGNGKFSNLLIPWATYTEPEVAHVGLYPRDLEAKGVGYQTFTR 548          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: A0A0G4FLL1_VITBC (DEP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FLL1_VITBC)

HSP 1 Score: 280 bits (717), Expect = 1.840e-87
Identity = 138/209 (66.03%), Postives = 167/209 (79.90%), Query Frame = 1
Query:    1 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTK 627
            +V+G GPIGLE+AQ+ +RFGSEV VL R G ++PKED DA A+V ++L +DGL ++  + F++V HE P E   F  I + +E+DG  +V E EALLVATGRKPNV  +GLE AGVE++ + GVKVND LQT+NKSIYAVGDCCTKF FTHAADFMAR VIRNALF+GKAK SDLLIPW T TEPE+AHVGLYPRDME+  IAY T+TK
Sbjct:  362 IVMGAGPIGLEMAQSFRRFGSEVVVLNRGGKVLPKEDADAAAVVQKALERDGLVIKNRVTFVKVTHEPPAEGQPFGKITVHIERDGGSEVIEGEALLVATGRKPNVRGIGLEAAGVEYDDRMGVKVNDYLQTSNKSIYAVGDCCTKFHFTHAADFMARAVIRNALFWGKAKMSDLLIPWCTVTEPEIAHVGLYPRDMESGGIAYRTFTK 570          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: A0A6H5JXL0_9PHAE (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL0_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 8.920e-83
Identity = 131/142 (92.25%), Postives = 134/142 (94.37%), Query Frame = 1
Query:    1 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEK-----VFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSI 411
            VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPL+KIFVEQDGQEK     VFECEALLVATGRKPNV NVGLEKAGVE NPK+GVKVNDQLQTTNK +
Sbjct:   90 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLVKIFVEQDGQEKDDQEQVFECEALLVATGRKPNVGNVGLEKAGVEINPKDGVKVNDQLQTTNKGV 231          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: A0A520ZUQ4_9DELT (FAD-containing oxidoreductase (Fragment) n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A520ZUQ4_9DELT)

HSP 1 Score: 248 bits (633), Expect = 2.000e-78
Identity = 130/211 (61.61%), Postives = 162/211 (76.78%), Query Frame = 1
Query:    4 VIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQVS 636
            VIG GPIGLELAQA QR GS VTV  RS  IMPKED +A  IV  S+LKDG+   FH  F RVE    K EG+   +K+ +++DG E V E +ALL+ATGRKP+VS++GLEKAGVEF+ ++GV VN++LQTTN +IYAVGD   K+QFTH ADFMAR+VI+NALFFG+ K SDLLIPWAT+TEPEVAHVGLY +D+  + I + T+ ++ S
Sbjct:   55 VIGAGPIGLELAQAFQRLGSLVTVFSRSEKIMPKEDPEAVEIVKASMLKDGVTFAFHSTFKRVEG---KVEGE--PVKVVLDKDGSEVVHEFDALLIATGRKPSVSSMGLEKAGVEFDTRKGVIVNEKLQTTNDNIYAVGDVAGKYQFTHMADFMARLVIKNALFFGRDKVSDLLIPWATYTEPEVAHVGLYEKDLVERDIPFATFKREFS 260          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: A0A7Y3AFA7_9DELT (FAD-containing oxidoreductase n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3AFA7_9DELT)

HSP 1 Score: 248 bits (634), Expect = 2.940e-75
Identity = 130/211 (61.61%), Postives = 162/211 (76.78%), Query Frame = 1
Query:    4 VIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQVS 636
            VIG GPIGLELAQA QR GS VTV  RS  IMPKED +A  IV  S+LKDG+   FH  F RVE    K EG+   +K+ +++DG E V E +ALL+ATGRKP+VS++GLEKAGVEF+ ++GV VN++LQTTN +IYAVGD   K+QFTH ADFMAR+VI+NALFFG+ K SDLLIPWAT+TEPEVAHVGLY +D+  + I + T+ ++ S
Sbjct:  360 VIGAGPIGLELAQAFQRLGSLVTVFSRSEKIMPKEDPEAVEIVKASMLKDGVTFAFHSTFKRVEG---KAEGE--PVKVVLDKDGSEVVHEFDALLIATGRKPSVSSMGLEKAGVEFDTRKGVIVNEKLQTTNDNIYAVGDVAGKYQFTHMADFMARLVIKNALFFGRDKVSDLLIPWATYTEPEVAHVGLYEKDLVERDIPFATFKREFS 565          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: UPI0010AB8C00 (FAD-containing oxidoreductase n=1 Tax=Desulfosediminicola flagellatus TaxID=2569541 RepID=UPI0010AB8C00)

HSP 1 Score: 246 bits (627), Expect = 2.810e-74
Identity = 121/211 (57.35%), Postives = 163/211 (77.25%), Query Frame = 1
Query:    4 VIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQVS 636
            VIG GPIGLELAQA QRFGS+VTV  RSG I+PKED +A  +V  S++KDG+   F+  +  V     K   D  +I++ V+  G+EK+ E + LL+ATGRKP+V+ +GLEKA VEF+ ++GV VND+LQT+N +IYAVGD  +K+QFTH ADFMAR+VI+NALFFG+ K SDLL+PWAT+T+PEVAHVGLY +D++ ++IAY T+ ++ S
Sbjct:  354 VIGAGPIGLELAQAFQRFGSKVTVFSRSGTILPKEDPEAAELVKTSMIKDGVTFAFNSSYKWV-----KGTADNEIIRVAVDIAGEEKIMEFDELLIATGRKPSVTGLGLEKADVEFDLRKGVLVNDKLQTSNPNIYAVGDVASKYQFTHMADFMARLVIKNALFFGRDKVSDLLVPWATYTDPEVAHVGLYEKDLDEREIAYTTFKREFS 559          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: A0A7S3Y3S3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3S3_HETAK)

HSP 1 Score: 237 bits (604), Expect = 4.350e-74
Identity = 122/224 (54.46%), Postives = 162/224 (72.32%), Query Frame = 1
Query:    1 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPK----EEGD----FPLIKIFVEQDGQE--KVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALF-FGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQVSQ 639
            +V+G GPIGLELAQ   RFGS+VTV+ R   I+PKED DA  IV +S+LKDG+   F+  FLR EH  P     + GD    F  +++ +E+ G+E  +V E +ALL+ TGR+PNV  +GLE AGV  +   GV+V+D L+T+N +++AVGDCCT++QFTHAADFMAR+V+RNALF  G+A+FS LL+PW TFT PEVAHVG YP D+EAQ + Y TY K  ++
Sbjct:   33 LVVGFGPIGLELAQCFARFGSQVTVVGRRDKILPKEDRDAAEIVYQSMLKDGMEFIFNCTFLRFEHTLPPPPPGDGGDGETRFGTVRLRLEERGKEGVRVLEADALLLGTGRRPNVEGMGLEAAGVAHDAVAGVQVDDHLRTSNPAVFAVGDCCTRYQFTHAADFMARLVLRNALFPLGRARFSALLVPWCTFTAPEVAHVGQYPADLEAQGVPYATYRKSFAE 256          
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Match: F0Y9C3_AURAN (Mercuric reductase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9C3_AURAN)

HSP 1 Score: 242 bits (617), Expect = 3.200e-73
Identity = 120/220 (54.55%), Postives = 158/220 (71.82%), Query Frame = 1
Query:    1 VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLKDGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVATGRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFTHAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQKIAYDTYTKQVSQRPIFFLE 660
            VV+G GPIGLE+AQA+  FGS+VT ++RS  ++PKED DA A+V  +L +DG+       + RVEH  PK+   FP I + V+ DG E   ECE LLVATGRKPNV + GL+KAGV F+ ++GV+V+D L+TTN  +YAVGD CT++QFTH A  MA +V+ NALF G+  FS L++PWAT+TEPEVAHVGLY RD+ +Q +A DTYT  ++      LE
Sbjct:  276 VVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPDAAALVRAALERDGVAFVTGAAYKRVEHAPPKKGAAFPTIGVAVDVDGAETRLECEMLLVATGRKPNVEHCGLDKAGVAFDVRDGVQVDDYLRTTNPDVYAVGDVCTRYQFTHVAGTMAGMVVDNALFRGRHAFSKLVVPWATYTEPEVAHVGLYERDVASQGLACDTYTTALAHNDRAILE 495          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18041.5537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9I3_ECTSI1.050e-14495.45Mercuric reductase A n=1 Tax=Ectocarpus siliculosu... [more]
B7ZGN8_9PHAE3.870e-12480.91Mercuric reductase A (Fragment) n=1 Tax=Laminaria ... [more]
A0A836CF07_9STRA1.040e-8863.64Mercuric reductase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A0G4FLL1_VITBC1.840e-8766.03DEP domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A6H5JXL0_9PHAE8.920e-8392.25Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A520ZUQ4_9DELT2.000e-7861.61FAD-containing oxidoreductase (Fragment) n=1 Tax=D... [more]
A0A7Y3AFA7_9DELT2.940e-7561.61FAD-containing oxidoreductase n=1 Tax=Desulfobacte... [more]
UPI0010AB8C002.810e-7457.35FAD-containing oxidoreductase n=1 Tax=Desulfosedim... [more]
A0A7S3Y3S3_HETAK4.350e-7454.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y9C3_AURAN3.200e-7354.55Mercuric reductase n=1 Tax=Aureococcus anophageffe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18041contigEcto-sp13_S_contig18041:235..3174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score421.0
Seed ortholog evalue3.4e-115
Seed eggNOG ortholog2880.D7G9I3
Model size660
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.dihydrolipoyl dehydrogenase activity
EggNOG OGsCOG1249@1,KOG1335@2759
Ec32 ortholog descriptionPyridine nucleotide-disulphide oxidoreductase, NAD-binding domain
Ec32 orthologEc-28_001040.1
Cds size660
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.324587-CDS-Ecto-sp13_S_contig18041:234..3391681462932.324587-CDS-Ecto-sp13_S_contig18041:234..339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18041 235..339 +
1681462932.3481576-CDS-Ecto-sp13_S_contig18041:1005..11671681462932.3481576-CDS-Ecto-sp13_S_contig18041:1005..1167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18041 1006..1167 +
1681462932.3587186-CDS-Ecto-sp13_S_contig18041:2002..21401681462932.3587186-CDS-Ecto-sp13_S_contig18041:2002..2140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18041 2003..2140 +
1681462932.3718295-CDS-Ecto-sp13_S_contig18041:2623..27201681462932.3718295-CDS-Ecto-sp13_S_contig18041:2623..2720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18041 2624..2720 +
1681462932.382662-CDS-Ecto-sp13_S_contig18041:3016..31741681462932.382662-CDS-Ecto-sp13_S_contig18041:3016..3174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18041 3017..3174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18041.5537.1prot_Ecto-sp13_S_contig18041.5537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18041 235..3174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18041.5537.1

>prot_Ecto-sp13_S_contig18041.5537.1 ID=prot_Ecto-sp13_S_contig18041.5537.1|Name=mRNA_Ecto-sp13_S_contig18041.5537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
VVIGGGPIGLELAQAMQRFGSEVTVLIRSGAIMPKEDDDARAIVLESLLK
DGLNLQFHLKFLRVEHESPKEEGDFPLIKIFVEQDGQEKVFECEALLVAT
GRKPNVSNVGLEKAGVEFNPKEGVKVNDQLQTTNKSIYAVGDCCTKFQFT
HAADFMARIVIRNALFFGKAKFSDLLIPWATFTEPEVAHVGLYPRDMEAQ
KIAYDTYTKQVSQRPIFFLE
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mRNA from alignment at Ecto-sp13_S_contig18041:235..3174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18041.5537.1 ID=mRNA_Ecto-sp13_S_contig18041.5537.1|Name=mRNA_Ecto-sp13_S_contig18041.5537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2940bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18041:235..3174+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGATCGGAGGAGGACCCATCGGTCTCGAGCTAGCCCAGGCAATGCA GCGCTTCGGGTCGGAAGTCACCGTGCTCATCCGCTCCGGAGCTATCATGC CCAAGGTGCGTAAGTGAAGGCGGGGTGGTTTTGGTTGTGTCCTCCCCCCT AGGCTTGGGCGTTGGCACTGCCGGCCGAAAAATATCGAAGACGTGATTCT GCTCGACGTGAAGGCAGGGGAAAGTGCTCTCTACGCCGCTTAGACCCAGG TGGTGTTATTCTTCGTGCCGAGACCGGCCCGAGTCTACCCATTACGAGAC GCTCTTGGGACAGTGAAGACGGTCGGTTGCACATATCTCTGCGGGTGTTA TGTTGCTCTCCCTCTCTCTCTGGCTTTTGTTTTGCTGGCTATCTTTGTTG AGGTATTGCAGTCGCCATCGACATGTCAAATTTTTTAATTCTAGTGCATA CCTCTCTTGTCTTGTGTTTTCTAGTAACGGCGACGAAGGCGTGTGTCTCG GCTTTCGTTGCCATCCACAGTTGTAACGACAGTAGAAGTACCACCGTCTT ACACTGGTATCAATACTGTCCTTTTCGTTCTTTCGTACCACCCTCTTGTT GCCGTGTCCCCACCCACCTTGCTCTCTTAACGATCCCTATCCTCACCCAC CATGATCTCTTAACGATCCCTATCCTCACCCACCTTGCTCTCTTAACGAT CCCTATCCTCACCCACCATGATCTCTTCTGTTCCCTCCTGTGTCTGTTTA ATTAATGCTGAATTCACCCAGGAGGATGACGACGCGAGGGCGATCGTGCT TGAGTCCCTCCTTAAGGACGGCTTGAACCTCCAGTTCCACCTCAAGTTCC TCCGCGTGGAGCACGAGAGTCCAAAGGAGGAGGGAGACTTCCCCCTTATC AAGATCTTCGTGGAGCAGGACGGCCAGGAGAAGGTCAGTAAAGATCTTCG TACTTAGAACAGGACGGCCAGGAAAAGGTCGGTAAGGATCTTGGTAGAAC AGCACGGCTAGGAGAAAGTCGGCAAGGAACTTGGTAGAACAGGACGGCCA CGAGAAGATCAGTAGGGATCTTGGCTGAACAGGACGGCCAGGAGAAGGTC AGTAAGGATCTTGGTCGAACAGGACGGCCACGAGAGTTCAGTAAAGATCT TCGTATTTAGGACAGGACGGCCAGGAGCAGGTCAGTACGAACAAGTCTTG GACAACTTACGTTACAATCTCAAAAGACCCATTCGAGACAATACCGCAGT CGAGTGGGTTGTAACTGCTGCTCGCTTCATTTCGTTCCACATAAAACCTT CTGGTTTTTCATGCCGGTTGTCGTGTTGTCTTTTTTCGCGCTGACTATAC CGCTGCCTCTTGTGACCGACTGACTGGCTTCGCGCGGCCCCGGCACCGCT CGCTGTCGATCGTCTTACGGCGGTGGTCCGTGCCACTGTTTTCACTCGGG TCGCGACTTCACACCAACGGCAACGAATCGTGGTCTACTCGGCCACCACG CTTCTAATCAACTACCCAAGAGACTCTATAATAGTCGGAAACTGCTCCTC GTCCTGCCCGTCGTCGTCGGCTCTGCGTACGCGACTTGTGCCGTCTGGTG TGACTTAAGAAGATCAGCTCTCTCCCTCAAGAGGCCGTTGTTGTCGTTCG TTCCATGGTAATTCGTTCTTACATGCTCGCTCTCTCTCTCTCTCTCTCTC TCTCCGTGCCCGTTGTCGTTGGTGTCGCTCGTCCTACGGCATACATCCGT GCGTGCTCGATGACCCAGGTGTTCGAGTGCGAGGCCCTCCTGGTGGCCAC CGGGCGGAAGCCCAACGTGAGCAACGTGGGCCTGGAGAAGGCGGGGGTGG AGTTCAACCCCAAGGAGGGCGTCAAGGTCAACGACCAGCTGCAGACCACT AACAAGGTACCAGTCAGGGTTGGAACTAGGGTTAGGGTTAGGGTTAGGGT ACAGAGCGTGATGTGTGTGTGGTGGATGCCGCTCTCTCTGGTTGTCCTCG TCTCGACGTTGTTGTTTGGAGGTGTGGTGTAGGGCGTGTAATAGCGGATG TTGCTCTCGTTTCTTTTCTTCTCCGGGATTGCAGACGTGCATGCTGCTAT GAAGCTGCTCTCGGATGTTCACTGCTGTAGCGTGAAGAGTCGTTTTGGGA AAATCAAGGTCTTGTGGATCGGGTTCAGGGATCCTGCCGGAGTAAAACGA GAGCTCAAGAGACCCGCTCCCGGACCTGCGCGCAGGCGAACCGATCATCT AACCTTGCCGCAAAACCACGATCTGCTATGTCCATGCTTCCTCCCTCTTG TGTGTGACTTTCTCTCTCGCTCTTAATCTCTCATTCTGTCTTTCTCTCTC TCCGTGACTACCATTTGGTGCCGATGGAACCCTCGTCAGTCTATCTACGC TGTCGGGGACTGCTGCACGAAGTTCCAGTTCACTCACGCCGCGGACTTCA TGGCAAGGATCGTCATCAGGAACGCGCTCTTCTTCGGTAAGCGTTAAATA CCAGGACAATCGAGAACGCATCGCATGCAATATAGATGGATACAGCAGTA TGATTGGTATACTTAAGGTGTAGCCGAAATCAAACCATTAGACTAGTCAA CGCTGGCTAGTCTAATAGGTCGATTGCGACTTCAATATAGACTAACCCAC GAAAAAATTGTTGTAAATCACCAGCATGTCCCAGAACGATCTATGCTGTA GTAACGTCACCCCCCCTTCCACGCCCGCCCGCCCTCGCGCTCCCCGGCGC CCCTGATCTGGCTTAATTCAACTCCACCGTAGGCAAGGCGAAGTTCAGCG ACCTCCTGATCCCATGGGCCACCTTTACCGAGCCGGAGGTGGCCCACGTT GGGCTGTACCCTCGCGACATGGAGGCGCAGAAAATCGCATACGACACGTA CACCAAGCAGGTGAGCCAGAGACCCATTTTTTTTCTTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18041:235..3174+

>mRNA_Ecto-sp13_S_contig18041.5537.1 ID=mRNA_Ecto-sp13_S_contig18041.5537.1|Name=mRNA_Ecto-sp13_S_contig18041.5537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18041:235..3174+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGATCGGAGGAGGACCCATCGGTCTCGAGCTAGCCCAGGCAATGCA
GCGCTTCGGGTCGGAAGTCACCGTGCTCATCCGCTCCGGAGCTATCATGC
CCAAGGAGGATGACGACGCGAGGGCGATCGTGCTTGAGTCCCTCCTTAAG
GACGGCTTGAACCTCCAGTTCCACCTCAAGTTCCTCCGCGTGGAGCACGA
GAGTCCAAAGGAGGAGGGAGACTTCCCCCTTATCAAGATCTTCGTGGAGC
AGGACGGCCAGGAGAAGGTGTTCGAGTGCGAGGCCCTCCTGGTGGCCACC
GGGCGGAAGCCCAACGTGAGCAACGTGGGCCTGGAGAAGGCGGGGGTGGA
GTTCAACCCCAAGGAGGGCGTCAAGGTCAACGACCAGCTGCAGACCACTA
ACAAGTCTATCTACGCTGTCGGGGACTGCTGCACGAAGTTCCAGTTCACT
CACGCCGCGGACTTCATGGCAAGGATCGTCATCAGGAACGCGCTCTTCTT
CGGCAAGGCGAAGTTCAGCGACCTCCTGATCCCATGGGCCACCTTTACCG
AGCCGGAGGTGGCCCACGTTGGGCTGTACCCTCGCGACATGGAGGCGCAG
AAAATCGCATACGACACGTACACCAAGCAGGTGAGCCAGAGACCCATTTT
TTTTCTTGAG
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