mRNA_Ecto-sp13_S_contig1804.5536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1804.5536.1
Unique NamemRNA_Ecto-sp13_S_contig1804.5536.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1804.5536.1 vs. uniprot
Match: D7FH43_ECTSI (Exocyst complex component, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH43_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 7.470e-51
Identity = 258/286 (90.21%), Postives = 265/286 (92.66%), Query Frame = 1 
Query:    1 RGFEQETLACMRARRDELSSNQNVSVVSNLAEIGGSYVPLLAAWCAQLLPEIADEEEVSNLRDLRSEFQRSAQNPLRAREIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ASDGIVKAPSGSVAPSGRXXXXXSERRSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------DASRDKIPSLKQSLNNRASFSKPSGGASSAVPVATGRISVTSTS 825
            R + +ETLACMRARRDELSSNQ+V+VV+NLAEIGGSYVPLLAAWCAQLLPEIA+EEEVSNLRDLRSEFQRSAQNPLRAREIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASDGIVKAPSGS APSGRXXXXX  RRSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXX          DASRDKIPSLKQSL NRASFSKPSGGAS+AVPV TGRISVTSTS
Sbjct:  572 RTYLKETLACMRARRDELSSNQSVAVVNNLAEIGGSYVPLLAAWCAQLLPEIANEEEVSNLRDLRSEFQRSAQNPLRAREIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASDGIVKAPSGSAAPSGRXXXXXXXRRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATXXXXXXXXXXXRSGSLPHGDASRDKIPSLKQSLTNRASFSKPSGGASTAVPVTTGRISVTSTS 857
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BLAST of mRNA_Ecto-sp13_S_contig1804.5536.1 vs. uniprot
Match: A0A6H5K667_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K667_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-19
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 RGFEQETLACMRARRDELSSNQNVSVVSNLAEIGGSYVPLLAAWCAQLLPEIAD 162
            R + +ETLACMRARR+ELSSNQ+VSVVSNLAEIG SYVPLLAAWCAQLLPEIAD
Sbjct:   29 RTYLKETLACMRARRNELSSNQSVSVVSNLAEIGVSYVPLLAAWCAQLLPEIAD 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1804.5536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH43_ECTSI7.470e-5190.21Exocyst complex component, putative n=1 Tax=Ectoca... [more]
A0A6H5K667_9PHAE1.100e-1987.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1804contigEcto-sp13_S_contig1804:13338..15235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1237
Hectar predicted targeting categoryother localisation
Exons3
Cds size1206
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.2438998-CDS-Ecto-sp13_S_contig1804:13337..135751681462932.2438998-CDS-Ecto-sp13_S_contig1804:13337..13575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1804 13338..13575 -
1681462932.255808-CDS-Ecto-sp13_S_contig1804:13851..146781681462932.255808-CDS-Ecto-sp13_S_contig1804:13851..14678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1804 13852..14678 -
1681462932.2719562-CDS-Ecto-sp13_S_contig1804:15064..152051681462932.2719562-CDS-Ecto-sp13_S_contig1804:15064..15205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1804 15065..15205 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.2811923-UTR-Ecto-sp13_S_contig1804:15205..152351681462932.2811923-UTR-Ecto-sp13_S_contig1804:15205..15235Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1804 15206..15235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1804.5536.1prot_Ecto-sp13_S_contig1804.5536.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1804 13338..15205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1804.5536.1

>prot_Ecto-sp13_S_contig1804.5536.1 ID=prot_Ecto-sp13_S_contig1804.5536.1|Name=mRNA_Ecto-sp13_S_contig1804.5536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
MRARRDELSSNQNVSVVSNLAEIGGSYVPLLAAWCAQLLPEIADEEEVSN
LRDLRSEFQRSAQNPLRAREIASSSGGSSSTAGRLPSAASGTLVAAAAAA
QASTTASSASAGNRSRRSSSSGGGASGTPPIGVAGAPSSSSSSQRRTSGG
GASDGIVKAPSGSVAPSGRPSGGGSERRSSGGGGSERRSSGDGSGSRASA
ATASSSSAAGGGARSGPLAAGDASRDKIPSLKQSLNNRASFSKPSGGASS
AVPVATGRISVTSTSPSVTASGGATPVSASALADAAAARAAQAAGTHRVS
ELFSHYAECTPAQLSCGVFSIHSRGERRQLRQFPVLVRVGQPQRRWGHER
CQRRGEPRGRRGGGDVGGGSPAETHPHPQGGQGGGASEGQGRRGGESRTR
RK
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mRNA from alignment at Ecto-sp13_S_contig1804:13338..15235-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1804.5536.1 ID=mRNA_Ecto-sp13_S_contig1804.5536.1|Name=mRNA_Ecto-sp13_S_contig1804.5536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1898bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1804:13338..15235- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGGCTTTGAGCAGGAAACGCTCGCTTGCATGAGGGCTAGGAGGGACGA
GCTCTCCTCGAACCAGAACGTGTCGGTGGTGAGCAACCTGGCGGAGATCG
GGGGGAGCTACGTGCCTCTTCTGGCAGCGTGGTGCGCGCAGCTTCTTCCT
GAGATCGCGGACGAGGAGGAGGTCGGTGGTTTCTGTTGTTGTTGGTCATG
TGTTGTTTCTCTTGTAGTTATATCACACACTTTGTTGTCATTGTCATCGT
TGCTGCTGCCATTGCTGCTGCTGCTGTTGCGATCATGTTGCCGCTCTCTC
GTACTCTCTTTGGCTCTCCCTCTTACTCACTCACTCTCTCCTCGCTCACT
CTGCCTTCATGTCTACGTCACTCTCCCCCTCTCTACGTCACCCTTCTCCT
ATGTTTCACTCTGTCCCTGTCTCTTGTGCACTCTCTCTCCTCCTCTCTCC
CCTTCCCCCTTTCTCTCCCTCTCCCCCCCTCTCTCCCCCCTCCCCCCACC
TCTCTCTTCAACTCTCTCTCTCCCCCCCCAAACCCGCTCCCCTCCACCGC
CACACAGGTCTCCAACCTCCGAGACCTGAGGTCAGAGTTCCAGAGGTCCG
CCCAGAACCCCCTGCGAGCGAGGGAGATTGCTTCCTCCAGCGGGGGATCA
TCTTCCACGGCTGGCCGGCTACCCTCCGCAGCCTCCGGCACCCTGGTCGC
CGCCGCGGCCGCCGCTCAGGCTTCTACCACCGCTTCTTCTGCCAGCGCCG
GTAACAGGTCGAGGAGATCATCTTCGTCCGGGGGGGGGGCAAGCGGGACG
CCTCCGATCGGCGTTGCTGGGGCCCCGTCTTCGTCGTCGTCATCGCAGAG
GAGAACATCCGGGGGGGGCGCGTCCGACGGGATCGTCAAGGCCCCCTCCG
GTAGCGTTGCCCCTTCCGGCCGTCCGAGCGGCGGGGGGTCTGAGAGGAGG
AGCAGCGGAGGCGGCGGGTCTGAGAGGAGAAGCAGCGGTGACGGCAGCGG
TAGCAGGGCCTCAGCGGCAACGGCGTCCTCTTCCTCGGCGGCTGGCGGTG
GCGCCAGGAGCGGCCCGCTCGCTGCTGGGGATGCGTCTCGCGACAAGATT
CCGTCGCTGAAGCAGTCTCTCAACAACCGCGCCTCCTTCTCCAAGCCCTC
TGGCGGTGCCTCATCGGCTGTTCCCGTCGCCACCGGGCGAATCTCGGTGA
CCTCTACATCGCCTTCGGTGACGGCTTCCGGGGGCGCAACTCCCGTGTCC
GCCTCCGCGCTCGCCGACGCCGCCGCGGCTCGAGCGGCCCAAGCCGCAGG
TACGCACCGTGTATCCGAACTGTTTTCGCATTATGCGGAATGCACCCCGG
CCCAACTCTCGTGTGGGGTGTTTTCCATACACAGGTATCTGGATCTGTTT
TGCGTCATGAAGGCCCCAGTGACTGTCTTGGGGCTGTTTTCTCCAGGTAT
CTGACCCGTTTATGCATGGTGAGGACCCCCCGAATGGCCATCAGTGATCA
GTCCTGTGGGAACGATGCCCCGTCCTCTCGAGGGCCCGTGGTCAACGGTC
GAAAACCTGAGGCATGCGAAACATAGGAGTACCCCCCACTCCCCTCATCG
GCGTCCCTTTTTCATGAGTTTCCCCCCCCCCCCCACCATCCGTTTGATTC
CATGTCGCAGCCGCGGCGAGCGCCGCCAGCTCCGGCAATTTCCGGTCCTC
GTACGTGTCGGGCAACCACAGCGGCGCTGGGGGCACGAGCGGTGTCAGCG
GCGGGGGGAGCCGAGGGGGCGACGCGGGGGGGGCGATGTCGGGGGGGGGT
CCCCAGCGGAGACCCACCCTCACCCTCAAGGCGGCCAGGGAGGCGGCGCA
AGCGAAGGCCAAGGCCGCCGCGGAGGCGAAAGCCGCACGCGGCGGAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1804:13338..15235-

>mRNA_Ecto-sp13_S_contig1804.5536.1 ID=mRNA_Ecto-sp13_S_contig1804.5536.1|Name=mRNA_Ecto-sp13_S_contig1804.5536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1804:13338..15235- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGCTAGGAGGGACGAGCTCTCCTCGAACCAGAACGTGTCGGTGGT
GAGCAACCTGGCGGAGATCGGGGGGAGCTACGTGCCTCTTCTGGCAGCGT
GGTGCGCGCAGCTTCTTCCTGAGATCGCGGACGAGGAGGAGGTCTCCAAC
CTCCGAGACCTGAGGTCAGAGTTCCAGAGGTCCGCCCAGAACCCCCTGCG
AGCGAGGGAGATTGCTTCCTCCAGCGGGGGATCATCTTCCACGGCTGGCC
GGCTACCCTCCGCAGCCTCCGGCACCCTGGTCGCCGCCGCGGCCGCCGCT
CAGGCTTCTACCACCGCTTCTTCTGCCAGCGCCGGTAACAGGTCGAGGAG
ATCATCTTCGTCCGGGGGGGGGGCAAGCGGGACGCCTCCGATCGGCGTTG
CTGGGGCCCCGTCTTCGTCGTCGTCATCGCAGAGGAGAACATCCGGGGGG
GGCGCGTCCGACGGGATCGTCAAGGCCCCCTCCGGTAGCGTTGCCCCTTC
CGGCCGTCCGAGCGGCGGGGGGTCTGAGAGGAGGAGCAGCGGAGGCGGCG
GGTCTGAGAGGAGAAGCAGCGGTGACGGCAGCGGTAGCAGGGCCTCAGCG
GCAACGGCGTCCTCTTCCTCGGCGGCTGGCGGTGGCGCCAGGAGCGGCCC
GCTCGCTGCTGGGGATGCGTCTCGCGACAAGATTCCGTCGCTGAAGCAGT
CTCTCAACAACCGCGCCTCCTTCTCCAAGCCCTCTGGCGGTGCCTCATCG
GCTGTTCCCGTCGCCACCGGGCGAATCTCGGTGACCTCTACATCGCCTTC
GGTGACGGCTTCCGGGGGCGCAACTCCCGTGTCCGCCTCCGCGCTCGCCG
ACGCCGCCGCGGCTCGAGCGGCCCAAGCCGCAGGTACGCACCGTGTATCC
GAACTGTTTTCGCATTATGCGGAATGCACCCCGGCCCAACTCTCGTGTGG
GGTGTTTTCCATACACAGCCGCGGCGAGCGCCGCCAGCTCCGGCAATTTC
CGGTCCTCGTACGTGTCGGGCAACCACAGCGGCGCTGGGGGCACGAGCGG
TGTCAGCGGCGGGGGGAGCCGAGGGGGCGACGCGGGGGGGGCGATGTCGG
GGGGGGGTCCCCAGCGGAGACCCACCCTCACCCTCAAGGCGGCCAGGGAG
GCGGCGCAAGCGAAGGCCAAGGCCGCCGCGGAGGCGAAAGCCGCACGCGG
CGGAAA
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