mRNA_Ecto-sp13_S_contig18033.5534.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18033.5534.1
Unique NamemRNA_Ecto-sp13_S_contig18033.5534.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: A0A6H5LBZ3_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBZ3_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.220e-40
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVY 219
            TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK+Y
Sbjct:  686 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKLY 758
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.210e-38
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK 213
            TVGTQFKDQLHNLMDMI+DTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK
Sbjct:  661 TVGTQFKDQLHNLMDMIKDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK 731
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: A0A6H5KDB8_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.790e-37
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK 213
            TVGTQF+ QLH+LMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK
Sbjct:  618 TVGTQFRGQLHDLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK 688
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: A0A835YXT9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.470e-34
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVY 219
            TVGTQFK+QLHNLMDMIRDTRPHYIRC+KPND A+PD ++R RVMEQLRYGGVLEAVRVARSG+PVRLPHK +
Sbjct:  928 TVGTQFKEQLHNLMDMIRDTRPHYIRCVKPNDQAQPDLINRPRVMEQLRYGGVLEAVRVARSGFPVRLPHKEF 1000
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: A0A7S2H2V2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H2V2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.720e-25
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPH 210
            TVG QFK+QL NLM+ +  T PHYIRC+KPND A+P  ++R R+ EQLRYGGVLEAVRVAR GYPVRL H
Sbjct:   48 TVGQQFKEQLSNLMEKVESTEPHYIRCLKPNDAAKPKMLTRKRLTEQLRYGGVLEAVRVARMGYPVRLDH 117
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: A0A7S4DA52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA52_HETAK)

HSP 1 Score: 108 bits (269), Expect = 2.060e-24
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVYLS 225
            ++GTQFK QL  LM  +++TRPHYIRC+KPND   PD+  R RV+EQLRYGGVLEAVRVARSGYPVRL H  + +
Sbjct:  676 SIGTQFKGQLRALMADVQETRPHYIRCLKPNDILAPDQFVRTRVIEQLRYGGVLEAVRVARSGYPVRLAHAEFFA 750
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: F0XZB9_AURAN (Myosin motor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZB9_AURAN)

HSP 1 Score: 108 bits (269), Expect = 2.110e-24
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVYL 222
            TVG+QFK QL +LM  +  T+PHY+RC+KPND+  PD   RVRV EQLRYGGVLEAVRVARSG+PVR+PH  +L
Sbjct:  599 TVGSQFKSQLASLMRAVSATKPHYVRCLKPNDDNVPDAFWRVRVAEQLRYGGVLEAVRVARSGFPVRMPHAEFL 672
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: A0A482RWB6_9ARCH (Myosin motor domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWB6_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 2.810e-24
Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 VGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVYLSCHT*KCRRQ 252
            VG QFK+QL  LMD I  T PHYIRC+KPND   PD+ SRVRV EQLRYGGVLEAVRVARSG+PVRL H  + + +     RQ
Sbjct:  401 VGIQFKEQLGKLMDCIYATTPHYIRCLKPNDRNLPDQFSRVRVTEQLRYGGVLEAVRVARSGFPVRLVHAEFFARYRLLLSRQ 483
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: W7U2F6_9STRA (Myosin head, motor domain protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2F6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.550e-24
Identity = 48/73 (65.75%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVY 219
            +V +QFK QL  LM  +  TRPHYIRC+KPND   PD  +R R+ EQLRYGGVLEAVRVARSGYPVRL H  +
Sbjct:  107 SVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEF 179
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BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Match: A0A8J2SIQ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIQ9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.500e-24
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 TVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVYL 222
            TV +QFK QL  LM+ I  T PHY+RC+KPND   PDE  R RV EQLRYGGVLEAVRVARSG+PVRLPH  ++
Sbjct:  622 TVASQFKTQLRKLMESISSTTPHYVRCLKPNDKNIPDEFVRKRVAEQLRYGGVLEAVRVARSGFPVRLPHAEFV 695
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18033.5534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBZ3_9PHAE3.220e-4098.63Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D8LTS1_ECTSI1.210e-3898.59Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5KDB8_9PHAE4.790e-3795.77Myosin motor domain-containing protein n=2 Tax=Ect... [more]
A0A835YXT9_9STRA2.470e-3484.93P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2H2V2_9STRA1.720e-2570.00Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4DA52_HETAK2.060e-2466.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0XZB9_AURAN2.110e-2467.57Myosin motor domain-containing protein (Fragment) ... [more]
A0A482RWB6_9ARCH2.810e-2465.06Myosin motor domain-containing protein (Fragment) ... [more]
W7U2F6_9STRA3.550e-2465.75Myosin head, motor domain protein (Fragment) n=1 T... [more]
A0A8J2SIQ9_9STRA7.500e-2467.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18033contigEcto-sp13_S_contig18033:1905..2635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score124.0
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog2880.D8LTS4
Model size461
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Cds size198
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.145707-UTR-Ecto-sp13_S_contig18033:1904..19431681462932.145707-UTR-Ecto-sp13_S_contig18033:1904..1943Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18033 1905..1943 +
1681462932.190419-UTR-Ecto-sp13_S_contig18033:2411..26351681462932.190419-UTR-Ecto-sp13_S_contig18033:2411..2635Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18033 2412..2635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.1650255-CDS-Ecto-sp13_S_contig18033:1943..19571681462932.1650255-CDS-Ecto-sp13_S_contig18033:1943..1957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18033 1944..1957 +
1681462932.180533-CDS-Ecto-sp13_S_contig18033:2227..24111681462932.180533-CDS-Ecto-sp13_S_contig18033:2227..2411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18033 2228..2411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18033.5534.1prot_Ecto-sp13_S_contig18033.5534.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18033 1944..2411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18033.5534.1

>prot_Ecto-sp13_S_contig18033.5534.1 ID=prot_Ecto-sp13_S_contig18033.5534.1|Name=mRNA_Ecto-sp13_S_contig18033.5534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSG
YPVRLPHKVYLSCHT*
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mRNA from alignment at Ecto-sp13_S_contig18033:1905..2635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18033.5534.1 ID=mRNA_Ecto-sp13_S_contig18033.5534.1|Name=mRNA_Ecto-sp13_S_contig18033.5534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=731bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18033:1905..2635+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGTGGGGACGCAGTTTAAGGACCAGCTGCACAACCTGATGGACATGAT
CAGGTGGGCTAATTGGTCTGTTTGGTTGGCAGTGATGCGACGAGAGGCGT
CATGGTTGTGGGGTGGTGGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TTCCACCATGCAGTTTGTGTGCATCACGAGGGCGATGTCGAGAGCAGCAA
TGGTGATGAGATGGGCAGTTGTTTGTCGTATTGTTAAACAGCCAGGGGTT
AAGTCAGTGGCAGGTACCAGATCTCACGCCCCTTTGCTTTGCTTTTGTGT
TCTCTCGCCCCGCCATGGATCAGAGACACACGTCCGCACTACATCCGGTG
CATCAAGCCTAACGACAACGCCGAGCCCGACGAGGTGTCGAGGGTGCGAG
TCATGGAGCAGCTCCGGTACGGAGGCGTGTTGGAGGCCGTTCGAGTCGCC
CGATCTGGATACCCCGTCCGTCTCCCCCACAAGGTATATCTCTCGTGCCA
TACTTGAAAGTGTCGCCGCCAAGTGCAATGCGGGGAGCATTTCGATCGTG
CTTTTTTTCTTGGCGATTTGGTTCCGGTTGGCGTAGACGAGCAGGCGGCT
GCTTGAAATGGATGTAGTGTAGAAGCGGGAGACAGACCCTCCCCGTTGGC
CAGCCAATCCAGCTGCTACTGCTGCCGTTGCTATTGCTACCGGACCTGAA
CGTGAGTTGCGTCGTGTTGTGCAAAGAACCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18033:1905..2635+

>mRNA_Ecto-sp13_S_contig18033.5534.1 ID=mRNA_Ecto-sp13_S_contig18033.5534.1|Name=mRNA_Ecto-sp13_S_contig18033.5534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18033:1905..2635+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATGATCAGAGACACACGTCCGCACTACATCCGGTGCATCAAGCC
TAACGACAACGCCGAGCCCGACGAGGTGTCGAGGGTGCGAGTCATGGAGC
AGCTCCGGTACGGAGGCGTGTTGGAGGCCGTTCGAGTCGCCCGATCTGGA
TACCCCGTCCGTCTCCCCCACAAGGTATATCTCTCGTGCCATACTTGA
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