mRNA_Ecto-sp13_S_contig18032.5533.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18032.5533.1
Unique NamemRNA_Ecto-sp13_S_contig18032.5533.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.720e-12
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTCVSGELDLG 99
            D +CDYYNNNEECDWDGGDCCACTCVSG    G
Sbjct:  320 DGHCDYYNNNEECDWDGGDCCACTCVSGYYTCG 352          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 4.210e-9
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTC 75
            D  CDYYNNNEECDWDGGDCC+CTC
Sbjct:  233 DGSCDYYNNNEECDWDGGDCCSCTC 257          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.000e-8
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTCVSGELDLGVR 105
            D +CD  NNN EC+WDGGDCC CTCV  + + G++
Sbjct: 1979 DGWCDLENNNAECNWDGGDCCECTCVDSQYECGIQ 2013          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.760e-8
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTC 75
            D  CDYYNNNEEC WDGGDCC+CTC
Sbjct:  232 DGSCDYYNNNEECGWDGGDCCSCTC 256          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.050e-8
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTCVSGELDL 96
            D YCD YNNNE CD+DGGDCC CTC S   D+
Sbjct:  280 DGYCDTYNNNEICDYDGGDCCECTCGSDSTDV 311          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.100e-6
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTCVSGELDL 96
            D YCD YNN E CD+DGGDCC CTC S   D+
Sbjct:  131 DGYCDTYNNIEICDYDGGDCCECTCGSDSTDV 162          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.180e-6
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTCVSGELDLGV 102
            D  CD +NNN EC++DGGDCC+CTC +   D GV
Sbjct:   39 DGECDTHNNNAECEYDGGDCCSCTCQNDTYDCGV 72          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: D8LEX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-6
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTCVSGEL 90
            D +CD YNNNE+C +DGGDCC CTCV   L
Sbjct:   10 DGFCDDYNNNEQCGYDGGDCCECTCVVSTL 39          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 47.0 bits (110), Expect = 6.910e-5
Identity = 18/29 (62.07%), Postives = 20/29 (68.97%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTCVSGE 87
            D YCD  NN   CD+DGGDCC C+CV G 
Sbjct:  158 DGYCDSSNNYPSCDYDGGDCCECSCVDGH 186          
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 47.0 bits (110), Expect = 6.950e-5
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 1
Query:    1 DRYCDYYNNNEECDWDGGDCCACTCVS 81
            D +CD +NNNE C +DGGDCC CTCV+
Sbjct:  177 DGWCDDWNNNELCGYDGGDCCECTCVA 203          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18032.5533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JVP4_9PHAE1.720e-1281.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX77_ECTSI4.210e-988.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI2.000e-857.14LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J6K0_9PHAE3.760e-884.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK5_9PHAE7.050e-868.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI1.100e-665.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE1.180e-658.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEX5_ECTSI1.190e-666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI6.910e-562.07Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FI87_ECTSI6.950e-566.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18032contigEcto-sp13_S_contig18032:3251..3361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.1158106-CDS-Ecto-sp13_S_contig18032:3250..33611681462932.1158106-CDS-Ecto-sp13_S_contig18032:3250..3361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18032 3251..3361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18032.5533.1prot_Ecto-sp13_S_contig18032.5533.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18032 3251..3361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18032.5533.1

>prot_Ecto-sp13_S_contig18032.5533.1 ID=prot_Ecto-sp13_S_contig18032.5533.1|Name=mRNA_Ecto-sp13_S_contig18032.5533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
DRYCDYYNNNEECDWDGGDCCACTCVSGELDLGVRAH
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mRNA from alignment at Ecto-sp13_S_contig18032:3251..3361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18032.5533.1 ID=mRNA_Ecto-sp13_S_contig18032.5533.1|Name=mRNA_Ecto-sp13_S_contig18032.5533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18032:3251..3361+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGGTACTGCGACTACTACAACAACAACGAGGAATGCGATTGGGACGG GGGCGACTGCTGCGCCTGCACGTGTGTATCTGGTGAGCTTGACCTTGGGG TGCGAGCGCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18032:3251..3361+

>mRNA_Ecto-sp13_S_contig18032.5533.1 ID=mRNA_Ecto-sp13_S_contig18032.5533.1|Name=mRNA_Ecto-sp13_S_contig18032.5533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18032:3251..3361+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGGTACTGCGACTACTACAACAACAACGAGGAATGCGATTGGGACGG
GGGCGACTGCTGCGCCTGCACGTGTGTATCTGGTGAGCTTGACCTTGGGG
TGCGAGCGCAT
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