mRNA_Ecto-sp13_S_contig18031.5532.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18031.5532.1
Unique NamemRNA_Ecto-sp13_S_contig18031.5532.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18031.5532.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.450e-27
Identity = 185/189 (97.88%), Postives = 186/189 (98.41%), Query Frame = 1 
Query:    1 VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKKKADAKPDNVTYNTVINALGRCGRVKEATLHLHAMKE 567
            VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MKKKA  KPDNVTYNTVINALGRCGRVKEAT+HLHAMKE
Sbjct:  126 VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKE 314
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BLAST of mRNA_Ecto-sp13_S_contig18031.5532.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.120e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 126
            VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL
Sbjct:  435 VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 476
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BLAST of mRNA_Ecto-sp13_S_contig18031.5532.1 vs. uniprot
Match: A0A7J6V656_THATH (Pentatricopeptide repeat-containing protein family n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V656_THATH)

HSP 1 Score: 49.3 bits (116), Expect = 7.710e-5
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:  472 KPDNVTYNTVINALGRCGRVKEATLHLHAMKEQGLSPDVVTFGTLIHAC 618
            +P+ +  N +INA G  GR  EA    H +KE G+SPDVVT+ TL+ AC
Sbjct:    7 EPNLIMLNLLINAFGIAGRYLEALSIFHQLKEIGISPDVVTYITLMKAC 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18031.5532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FY15_ECTSI1.450e-2797.88PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0B1_9PHAE1.120e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7J6V656_THATH7.710e-548.98Pentatricopeptide repeat-containing protein family... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18031contigEcto-sp13_S_contig18031:858..3177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score103.2
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FY15
Model size669
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size642
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.0293972-UTR-Ecto-sp13_S_contig18031:857..8841681462932.0293972-UTR-Ecto-sp13_S_contig18031:857..884Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18031 858..884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.046985-CDS-Ecto-sp13_S_contig18031:884..9981681462932.046985-CDS-Ecto-sp13_S_contig18031:884..998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18031 885..998 +
1681462932.0624743-CDS-Ecto-sp13_S_contig18031:1627..18101681462932.0624743-CDS-Ecto-sp13_S_contig18031:1627..1810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18031 1628..1810 +
1681462932.0721858-CDS-Ecto-sp13_S_contig18031:2354..24771681462932.0721858-CDS-Ecto-sp13_S_contig18031:2354..2477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18031 2355..2477 +
1681462932.0817378-CDS-Ecto-sp13_S_contig18031:2955..31771681462932.0817378-CDS-Ecto-sp13_S_contig18031:2955..3177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18031 2956..3177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18031.5532.1prot_Ecto-sp13_S_contig18031.5532.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18031 885..3177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18031.5532.1

>prot_Ecto-sp13_S_contig18031.5532.1 ID=prot_Ecto-sp13_S_contig18031.5532.1|Name=mRNA_Ecto-sp13_S_contig18031.5532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MMRSEGLAPTAITYNVLLRLCGLGGCWATGLELMGMMEDEGITPNPYHYN
SMFMALERGERWREAADLFRKMRASGTRPNALTYAPLIGVMDRCNKQDMA
GAVLKEMLRESPRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKADAKP
DNVTYNTVINALGRCGRVKEATLHLHAMKEQGLSPDVVTFGTLIHACAQS
AKREPALALFAELV
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mRNA from alignment at Ecto-sp13_S_contig18031:858..3177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18031.5532.1 ID=mRNA_Ecto-sp13_S_contig18031.5532.1|Name=mRNA_Ecto-sp13_S_contig18031.5532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2320bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18031:858..3177+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAAGCGGGCTCTAGGCTTGGTGCAGATGATGCGCTCGGAGGGGCTTGC
TCCGACGGCGATCACGTACAATGTGCTGCTGCGCTTGTGTGGGCTCGGCG
GGTGCTGGGCCACGGGGCTGGAGCTGATGGGCATGATGGAGGTAAAGTAC
CACTCGAAAAGCACTGCTGCGTTTTTGTTGGTGGTGGTTCTGCAGGAGGC
TTAATGGCCATGATGCAGGTAGTGTAGAGCTGCGGCGTTATGTTGATGAC
GACTCTCCTGCTGGGCAAGTGGCTTCTATTGGGCATGATGGAGGTAAAGT
AGTGCTCGAGAACGCTACCGCGTTTTGTTGATGATGGTTCTCCTGCTGGG
CACGAGGCAACCCCTCGTTTTTCCCTCCCTCCCTCCGCGTCGGTTTGGTC
GTCACGGTGGTGGTGCGTCGTAGTGCAGCTGTAATTGCCCTCGGTGATTG
TTTCTGTTGTTTTTTCCAATTCAGCACGCAAGTGAAGCACTCGGGCGTGC
TCTTTGACAGGGGATGTGTGCGGTGCCCTTTTCTGGCGTGACTCATGTTT
TCCCGCCCTCGTGGTTGTTACTGGTAGGACGCTATGGAGGTGCCAACGCG
CAACTACCACCTGTACCTGCTTCCTTGACCCTGTAGCTCCCTCCTTCTCA
CATGGTACGCATACACACACGTCTTTCGCGACAGCTTGGAGCAAGCCTGA
ACAACGACCCTGACGGTCCCGTTTCGCCTCTGTCTGTCTCTCGTGTTGTT
GTTTTTGTTTCCGTGGCCAGGACGAAGGGATAACGCCCAACCCGTACCAC
TACAACTCCATGTTCATGGCCCTTGAGCGCGGGGAGCGGTGGAGAGAGGC
CGCCGACCTGTTCCGCAAGATGCGCGCAAGCGGTACCAGACCCAACGCGC
TGACGTACGCGCCGCTGATAGGGGTGATGGACCGCTGCAACAAGCAAGAC
ATGGTGAGATGTTGTTGTTTCTTTCGGGACATCGGCCTTGTATGTTGGAC
TAGCGGTAGTAGTAGTAGTTGTTATTTTTGGTTGTTTTTGGTTGTTTTAC
AGAACAAGAAACTCTTGTTTGTGCAGAACAACGCTGGTTAATTGAGTACC
GTTGGGGACATTGCATACCCTTGAATGTGGCTGTTGTAGTTGTTTTTGGC
TGTTGTTGGTATACGGAACAGAGCATTATCCCTGGTATAGTAGAGCAAAA
GAGACCCTGGTTCATGGCGCAAGTTTGGGGCAGGCTGCTGCACTGCTGTA
CCCTCGGATGTGGTTTGACGCGGGTCCCTCAAGGACCCCGAGAAAAAAAG
CTGACCGGTTTGACCTGGATTTTTCTTGAGGTTGCCGTGCAAGTTATTGG
ACGCGTCATCCACATACCGGGTTGAAACAACAGGTTTGAACGTTGAGAGC
TACTCCAGTGCATCTACAACATCTGCTTATTTCCTGAAAGCATCGGCTTG
GAATAACACAAATCAACCCTAGCATGTGACGATAAAAACGAAAACAGGCT
GGCGCGGTGCTGAAAGAGATGCTGCGGGAGAGCCCCAGGGACTCGACGCG
GGAGTATAACCTGCTGCTTAACGCGTGCGCAAAGGCTCGGAAGTGGGAGC
ACGCGCAGTTGGTCTTTGAGGTGTGTCCATCCAGTCCCTTTTTTTTTGCC
GTGGATCTCTTAAAAAGTTTTCGTTGCCATGTTGTCTCACTCCATGACAT
CAGTTTTATGTNNNNNNNNNNTGCACGCACGCCCATGCATTTTTTTTTGT
GTTGGGGGGTGGCCCTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGACAAT
TTTTTTTTTTTTTGTCCATGTTGTGACATCGAAGGTAGCTGTGCCGTCGG
TTTTGATCGTGCTGCTTTTCTTCGCAACAAGAGTCACGAGTTCCCTCTAC
ACAAGCTACACCGCGCTCTGCCCCCAACCATAATCACACTCAAAGTGTTG
AAAAACTTACACAAAGACCATACTGAAGGTTGAGTTTTTTGCTCAAAAAT
ACTTGTTGAGTATGAGTATGCTTCACTTAACACACCCTTGGTTTAACGCC
TACGGCGCCGCCCCTCGATCACCTCGGTCTTTGATAATAAAAAAACAGGA
CATGAAGAAGAAGGCAGACGCGAAGCCCGACAACGTCACGTACAACACGG
TCATCAACGCGCTCGGCCGCTGCGGCAGAGTCAAAGAGGCGACGTTGCAC
CTGCACGCCATGAAGGAGCAGGGGCTAAGTCCGGACGTGGTGACGTTCGG
CACCCTCATACACGCCTGCGCGCAGAGCGCCAAGAGGGAGCCCGCGCTGG
CGCTGTTTGCGGAACTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18031:858..3177+

>mRNA_Ecto-sp13_S_contig18031.5532.1 ID=mRNA_Ecto-sp13_S_contig18031.5532.1|Name=mRNA_Ecto-sp13_S_contig18031.5532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18031:858..3177+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCGCTCGGAGGGGCTTGCTCCGACGGCGATCACGTACAATGTGCT
GCTGCGCTTGTGTGGGCTCGGCGGGTGCTGGGCCACGGGGCTGGAGCTGA
TGGGCATGATGGAGGACGAAGGGATAACGCCCAACCCGTACCACTACAAC
TCCATGTTCATGGCCCTTGAGCGCGGGGAGCGGTGGAGAGAGGCCGCCGA
CCTGTTCCGCAAGATGCGCGCAAGCGGTACCAGACCCAACGCGCTGACGT
ACGCGCCGCTGATAGGGGTGATGGACCGCTGCAACAAGCAAGACATGGCT
GGCGCGGTGCTGAAAGAGATGCTGCGGGAGAGCCCCAGGGACTCGACGCG
GGAGTATAACCTGCTGCTTAACGCGTGCGCAAAGGCTCGGAAGTGGGAGC
ACGCGCAGTTGGTCTTTGAGGACATGAAGAAGAAGGCAGACGCGAAGCCC
GACAACGTCACGTACAACACGGTCATCAACGCGCTCGGCCGCTGCGGCAG
AGTCAAAGAGGCGACGTTGCACCTGCACGCCATGAAGGAGCAGGGGCTAA
GTCCGGACGTGGTGACGTTCGGCACCCTCATACACGCCTGCGCGCAGAGC
GCCAAGAGGGAGCCCGCGCTGGCGCTGTTTGCGGAACTGGTG
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