mRNA_Ecto-sp13_S_contig18028.5530.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18028.5530.1
Unique NamemRNA_Ecto-sp13_S_contig18028.5530.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18028.5530.1 vs. uniprot
Match: A0A8J2SW32_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SW32_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.450e-10
Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 3 
Query:  300 ALLALWVSGSYAIDSDSGP-FPWLFVKRRVLRANLNGAGLRKDLHAIRKWVTDHHTLSKEAILHWWVRDLPDGKDGQAAACSRVSGSQEIEDMFRQKFSKRTYAVEPILFMNEVF 641
            ALL  W  G+ +IDSDS P  P+L  K R+L+         +DL A R W       + +   HWW+ DL    +    A  R++  + ++D+FR KFSK  YA+EP+  MNE++
Sbjct:  188 ALLVAW--GNLSIDSDSLPGLPFLPAKSRLLQGKFTSPEDVRDLKACRTWCVQKGP-NHDMTSHWWMSDLD---EPTLKAFERLATGKVVDDLFRTKFSKAGYALEPVRGMNELY 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18028.5530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J2SW32_9STRA1.450e-1036.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18028contigEcto-sp13_S_contig18028:1158..3560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score60.8
Seed ortholog evalue6.9e-07
Seed eggNOG ortholog44056.XP_009037209.1
Model size643
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Phospholipid methyltransferase
EggNOG OGs28Q2P@1,2QWRE@2759
Ec32 ortholog descriptionphospholipidmethyltransferase
Ec32 orthologEc-08_004940.2
Cds size507
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462931.8532453-UTR-Ecto-sp13_S_contig18028:1157..12911681462931.8532453-UTR-Ecto-sp13_S_contig18028:1157..1291Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18028 1158..1291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462931.864749-CDS-Ecto-sp13_S_contig18028:1291..17201681462931.864749-CDS-Ecto-sp13_S_contig18028:1291..1720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18028 1292..1720 +
1681462931.8741727-CDS-Ecto-sp13_S_contig18028:3482..35601681462931.8741727-CDS-Ecto-sp13_S_contig18028:3482..3560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18028 3483..3560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18028.5530.1prot_Ecto-sp13_S_contig18028.5530.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18028 1292..3560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18028.5530.1

>prot_Ecto-sp13_S_contig18028.5530.1 ID=prot_Ecto-sp13_S_contig18028.5530.1|Name=mRNA_Ecto-sp13_S_contig18028.5530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
METANSWIADLANALTEALSSPSTAALSTFFKDNEGLSPPPPTWLLALRE
NAWVLALLALWVSGSYAIDSDSGPFPWLFVKRRVLRANLNGAGLRKDLHA
IRKWVTDHHTLSKEAILHWWVRDLPDGKDGQAAACSRVSGSQEIEDMFRQ
KFSKRTYAVEPILFMNEVF
back to top

mRNA from alignment at Ecto-sp13_S_contig18028:1158..3560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18028.5530.1 ID=mRNA_Ecto-sp13_S_contig18028.5530.1|Name=mRNA_Ecto-sp13_S_contig18028.5530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2403bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18028:1158..3560+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTAGCATCACCGATCTCTCAAGCCGCAACTAATACTACCGCCGATCTCG
CGCCACGGGCCAGGACGTATCGAGCCAAAGCAGCAGCACGTGTTTCACAC
AACACGCAGTCCTCCTGCTCGAGCGAGAGTGCCTATGGAAACGGCTAACT
CATGGATCGCCGACCTCGCTAACGCTTTGACCGAAGCTCTCTCATCACCG
AGCACCGCCGCACTATCCACCTTCTTCAAGGACAACGAGGGTCTCTCACC
GCCACCGCCGACCTGGCTCCTCGCTCTACGGGAGAACGCGTGGGTCTTAG
CGCTCCTAGCGCTCTGGGTGTCGGGTTCCTACGCGATTGATTCTGACTCG
GGACCCTTCCCCTGGCTGTTCGTGAAGCGCAGGGTTCTTCGCGCGAACCT
CAACGGCGCGGGTCTGAGGAAGGACCTGCATGCCATTCGGAAGTGGGTGA
CCGATCACCATACGCTTTCGAAGGAAGCGATCTTGCACTGGTGGGTCCGC
GATCTTCCTGACGGGAAGGATGGGCAGGCGGCCGCGTGTTCCCGGGTGTC
AGGATCTCAGGAGGTGCGTGATGGGTGCGTACCGGTATGACGTATGCATA
CGAAACGAGAGAGACGGATGCAGAGAGAATGTGCAGCCAACCGTGCCGCA
CGGTCGGACCCCCCACACCATTTTCAAGTCTATTGCGAAAATACACGGGA
TCAATCCTTGAAGCTCACCTGGTGATCTACTTCTTCTATCTCTTGAGCTG
CAGTGCTGTGTTGTTGTTGCCTTATTCTTTGGTTAGACTAAACGTAGATT
TGCAATTTTCTCGTTTTGGTCGGTCGAAGTTTGCTGGGCCGGTCGAGGAA
AAAAGACACGTCAGCTGTGTGAGCTTGGGAAATGTAACTACTCACCTGAC
ACCCAGCTGTGAGCCGGTCCCGCTACCTGCATATTTTTCATCTTGCATCT
CCCCTTGGCGACACTGTGCTCGCACAATCCCTCCGTAGGGACCACGACCA
CTCGTAAAAAAGAGGGGGTCGCGGTGCCTCAAGATGGGGTGTGATGTGTA
CTGGACGAAAAAAAAAATGAAAAGGAGGGGAGCAGGTCCGCTGCTGTAGG
CTCTAGGTGGTTTTATTTGTTATCTATATCTTCTTTTGCCTCTTTGCCCT
GGTCCTCTCAGTGCCTACTTCAAGGGCACCACGGCCGTGCTTCGACCTGA
TCTTCATCAATGCTGACGACGACGTCAAGTATCCATCCATCTCCAATAAA
AGATTCAAAATATCCTTGTAGCACTTATACACCGCTCATTGCGTAATAGT
CAATAGTCATTCACTAGATGCTTATCAAAAATACAGACGCCTCCGTCTCG
ATAAACCCATCAAACACACATCAATTACACAAAGTTTTACATTTGCAAGC
CTTGTCATCCACGCTAGATATACGCCGGGAAAGTATGGGGAGGACTTACA
AGAATGAAAGAGTTGGAAGTGGAGCAGATGAAAGTAACGAAGAGTTTTCC
GGGATACTCTAAGCGCGCAAATTTCGCAGCAATACGAGCAAATAGTTGGG
ATCCATTTCCTAACAAACGGGAAAGACAGAAGAAATCTGAAACGAACTGC
AATATCGTTTGAAAATTATGGGAGAGAGTAGAGGTTACCGAAAATTGCGA
AGGAGGCGAAGTGGGAAAACGAGCAGGCAATATTTGTATAGGAAGTGTGG
AGGGGGCCGCCTTCGAGGAGATATCTCATTTTTTCAGGAGAGGGCCCGTA
CAGAACGAAAGCCAACTGCGGAAAGAGTGGGTCTACAACAACGGGATGTT
GGTGTGTTGAGGAGAAGGCTTCAATGAGTATTTCCTTCGACCAACGGATG
CCGGAACAAAGTTGAAGGCCGTGTTTTTGCCTGGGGGCACGCTTTGACGT
TCGGAAACTTAGACAGACACTTTCGAAGGTAGACGAAGATGACGACAAAA
AAATTCAAGTGTACATCGGCTCCATGCCAAGACTTGCTTTTTCATGAAGT
TGCGATGTGCTCGTTTACGAAAAGGAGAGAGAAATTTACGTGACGGATCT
GATGGAAACAAAACTACGCTACGGAGAGATTTTGAGAAATTGCAGTACTG
GGGTAAAATACCGGTCTAAGCAGGATGTAAACAGAACAGGGATAAGATGT
TTGTGCAACAGTTGGCAAAGTAGGAAGGAATGATTGACTATGGGCGATCA
ATCGTGTCGGAAGAGCGCTCTGTCCCTGCAAGCACGCGCGGCCAATGGTC
AATCAGCTAAGCCCTCCATAACCTGAGCACGCTGTACCCCCCCCTGGTAC
GTGCCTCGATTGTGAACGAACGCAGATCGAAGACATGTTTCGCCAAAAGT
TCTCCAAGCGCACGTATGCTGTCGAGCCCATCCTCTTCATGAACGAGGTC
TTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18028:1158..3560+

>mRNA_Ecto-sp13_S_contig18028.5530.1 ID=mRNA_Ecto-sp13_S_contig18028.5530.1|Name=mRNA_Ecto-sp13_S_contig18028.5530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18028:1158..3560+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAACGGCTAACTCATGGATCGCCGACCTCGCTAACGCTTTGACCGA
AGCTCTCTCATCACCGAGCACCGCCGCACTATCCACCTTCTTCAAGGACA
ACGAGGGTCTCTCACCGCCACCGCCGACCTGGCTCCTCGCTCTACGGGAG
AACGCGTGGGTCTTAGCGCTCCTAGCGCTCTGGGTGTCGGGTTCCTACGC
GATTGATTCTGACTCGGGACCCTTCCCCTGGCTGTTCGTGAAGCGCAGGG
TTCTTCGCGCGAACCTCAACGGCGCGGGTCTGAGGAAGGACCTGCATGCC
ATTCGGAAGTGGGTGACCGATCACCATACGCTTTCGAAGGAAGCGATCTT
GCACTGGTGGGTCCGCGATCTTCCTGACGGGAAGGATGGGCAGGCGGCCG
CGTGTTCCCGGGTGTCAGGATCTCAGGAGATCGAAGACATGTTTCGCCAA
AAGTTCTCCAAGCGCACGTATGCTGTCGAGCCCATCCTCTTCATGAACGA
GGTCTTC
back to top