mRNA_Ecto-sp13_S_contig18026.5529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18026.5529.1
Unique NamemRNA_Ecto-sp13_S_contig18026.5529.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18026.5529.1 vs. uniprot
Match: D7G2K2_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K2_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 3.440e-136
Identity = 256/276 (92.75%), Postives = 258/276 (93.48%), Query Frame = 1 
Query:    1 RTRHRRSHSRDSQPSLRRRSLSRTPTQRSICPPEGIFSLDAGGRGDWETLKGAAGVKSPGGWSSGTSETDSTDAEAPPEVETGADIEFVLVVAGGHDLNDECIFEAMTPPEYGLEEFVDGVEALDMPDDVINKVHGDASETPEGDGGGIAGGSNGPKKTASVSIPXXXXXXXXXXXXXXXXXXXX-----GVVARTFSKDRSXXXXXXVAGSGAANAFENYAHVNEAHSTSKKIPVTTIASMSMMGTTMTGNAQTITSLGGVVPAPASPSANAPGE 813
            RTRHRRSHS DSQPSLRRRSLSRTPT R ICPPEGIFSLDAGG G WETLKGAAGVKSPGGWSSGTSETDSTDAEAPPE ETGADIEFVLVVAGGHDLNDECIFEAMTPPEYGLEEFVDGVEALDMPDDVINKVHG+ SETP GDGGGIAGGSNGPKKTASVSIP   XXXXXXXXXXXXXXXXX     GVVA TFSKDRSXXXXX VAGSGAANAFENYAHVNEAHSTSKKIPVTTIASMSM+GTTMTGNAQTITSLGGVVPAPASPSANAPGE
Sbjct:  837 RTRHRRSHSGDSQPSLRRRSLSRTPTLRPICPPEGIFSLDAGGVGAWETLKGAAGVKSPGGWSSGTSETDSTDAEAPPEAETGADIEFVLVVAGGHDLNDECIFEAMTPPEYGLEEFVDGVEALDMPDDVINKVHGETSETPAGDGGGIAGGSNGPKKTASVSIPPSVXXXXXXXXXXXXXXXXXXXXXXGVVAGTFSKDRSXXXXX-VAGSGAANAFENYAHVNEAHSTSKKIPVTTIASMSMIGTTMTGNAQTITSLGGVVPAPASPSANAPGE 1111
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BLAST of mRNA_Ecto-sp13_S_contig18026.5529.1 vs. uniprot
Match: A0A6H5JM06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM06_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 6.500e-113
Identity = 197/228 (86.40%), Postives = 197/228 (86.40%), Query Frame = 1 
Query:    1 RTRHRRSHSRDSQPSLRRRSLSRTPTQRSICPPEGIFSLDAGGRGDWETLKGAAGVKSPGGWSSGTSETDSTDAEAPPEVETGADIEFVLVVAGGHDLNDECIFEAMTPPEYGLEEFVDGVEALDMPDDVINKVHGDASETPEGDGGGIAGGSNGPKKTASVSIPXXXXXXXXXXXXXXXXXXXXGVVARTFSKDRSXXXXXXVAGSGAANAFENYAHVNEAHSTSKK 684
            RTRHRRSHSRDSQPSLRRRSLSRTPTQR ICPPEGIFSLDAGG G WETLKGAAGVKSPGGWSSGTSETDSTDAEAPPEVETGADIEFVLVVAGGHDLNDECIFEAMTPPEYGLEEFVDGVEALDMPDDVINKVHGDASETP G GGGIAGGSNGPKKTASVSIPXXXXXXXXXXXXXX                         AGS AANAFENYAHVNEAHSTSKK
Sbjct:   47 RTRHRRSHSRDSQPSLRRRSLSRTPTQRPICPPEGIFSLDAGGLGAWETLKGAAGVKSPGGWSSGTSETDSTDAEAPPEVETGADIEFVLVVAGGHDLNDECIFEAMTPPEYGLEEFVDGVEALDMPDDVINKVHGDASETPAGAGGGIAGGSNGPKKTASVSIPXXXXXXXXXXXXXX-------------------------AGSSAANAFENYAHVNEAHSTSKK 249
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18026.5529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2K2_ECTSI3.440e-13692.75Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A6H5JM06_9PHAE6.500e-11386.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18026contigEcto-sp13_S_contig18026:24..3029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size813
Hectar predicted targeting categoryother localisation
Exons6
Cds size813
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18026.5529.1prot_Ecto-sp13_S_contig18026.5529.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18026 24..3029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462931.7645738-CDS-Ecto-sp13_S_contig18026:23..1901681462931.7645738-CDS-Ecto-sp13_S_contig18026:23..190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18026 24..190 +
1681462931.7739182-CDS-Ecto-sp13_S_contig18026:673..7341681462931.7739182-CDS-Ecto-sp13_S_contig18026:673..734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18026 674..734 +
1681462931.7829907-CDS-Ecto-sp13_S_contig18026:1349..14361681462931.7829907-CDS-Ecto-sp13_S_contig18026:1349..1436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18026 1350..1436 +
1681462931.7938304-CDS-Ecto-sp13_S_contig18026:1760..18441681462931.7938304-CDS-Ecto-sp13_S_contig18026:1760..1844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18026 1761..1844 +
1681462931.8057315-CDS-Ecto-sp13_S_contig18026:2317..26041681462931.8057315-CDS-Ecto-sp13_S_contig18026:2317..2604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18026 2318..2604 +
1681462931.8207085-CDS-Ecto-sp13_S_contig18026:2902..30291681462931.8207085-CDS-Ecto-sp13_S_contig18026:2902..3029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18026 2903..3029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18026.5529.1

>prot_Ecto-sp13_S_contig18026.5529.1 ID=prot_Ecto-sp13_S_contig18026.5529.1|Name=mRNA_Ecto-sp13_S_contig18026.5529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
RTRHRRSHSRDSQPSLRRRSLSRTPTQRSICPPEGIFSLDAGGRGDWETL
KGAAGVKSPGGWSSGTSETDSTDAEAPPEVETGADIEFVLVVAGGHDLND
ECIFEAMTPPEYGLEEFVDGVEALDMPDDVINKVHGDASETPEGDGGGIA
GGSNGPKKTASVSIPPSAAGGGGGGPGGGAGSGGSGVVARTFSKDRSGGG
GGGVAGSGAANAFENYAHVNEAHSTSKKIPVTTIASMSMMGTTMTGNAQT
ITSLGGVVPAPASPSANAPGE
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mRNA from alignment at Ecto-sp13_S_contig18026:24..3029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18026.5529.1 ID=mRNA_Ecto-sp13_S_contig18026.5529.1|Name=mRNA_Ecto-sp13_S_contig18026.5529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3006bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18026:24..3029+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAACACGACACAGGCGCTCCCACAGTAGAGACTCCCAGCCCAGCCTGCG
GAGAAGAAGCCTGTCCAGGACCCCGACTCAGCGGTCCATTTGTCCCCCGG
AAGGAATCTTCTCGCTAGACGCGGGAGGCCGCGGCGATTGGGAAACCCTC
AAGGGAGCGGCGGGAGTGTGAGTGATTTTCATTTTGTTTGTGGGTTTTCT
TGTCAAACACGATAACACCATATCTTCCACAGACACTTCGAGTCTGGGAT
AGATTTGCAAAATTATTCGTAGCGTTTTGTCTTTTGCTTTTCTTGATTGC
TGTGCTATGACGACCATTCGGAGGAGGACTACAGGTCGGTTGGAGCAGAG
ACAGAACGAGGCCTTGGGGGGAGGAAGGGCACCGGGGGTGGGATTTTTTT
CTTTTTTTATCGGATGGTCTCTCCCTGTTTTGATTTCGTTGTGCCCCTTG
CTTGTTGAGCTTTATTTGTGCCACACCATTGCCATGTGGTTCTCTGTGGG
AGTTTTCAGGCGAGATGGAGCGGCGGAGGACCTACAGCTCTTCGATGTAT
CTCTCCCCGACCCCTTGTGGGAGGCGATAAGATCCCCCCCCCCCCTCCCG
ATTTTTCACCTCGAAACCCCCACCCGTGTAACCTGCTCATGTCGCGGCAG
GAAATCCCCTGGGGGCTGGAGCTCGGGGACGTCGGAGACTGATTCTACTG
ACGCAGAGGCGGTGAGACCATTAGACCATTAGACCGCTGGCGGGGGGGGG
TGAGCATAGAGTGGACAATGATAAAAAGTTGGGTTTGGGCGACGGCTACG
CATACAACGCGAGACATGCGATTGAGCATGTGTGTGCGGGGGAGGTTTCG
ACGGACAGGGGGGCTGCGAAGCGGGAAAACGGCTAGGGTACGGCGGGAGG
TTCAACATCCGTTGGTCGCCGCTGGTTGGGCAACGGATGGCAACACCGCT
ATAATACTTGGATCCTCGGTTGAGCCGATCGATTGGCATTGCCTCTCCGC
CGTCTGTTCTCGAGCGTTGTCGAACGATTCCAGTGTTGTTGTCTTTTTTT
TTCCGTGAGCGTGCCGTGACCTTGTCCTTCTGCTAGCGCCAATCTCGCCT
CCTTGCTATTCCGTCAGTTTTCTGCCATTGTGGCGGTTTCTTTTCATGCC
TTCTCCTAATGCTCGCATTTTTTTGCATTTCTCTGAAATTTTCTTCCGAT
GTGATTGTTTCTTCTGATGCTCTCTTCTGACGCCTTCTTCTGATGCTCTT
CTGATGACGAACCCTTCTGATGCTTACTTCTGATGTTTTTTTGCTGATGC
GGGGTTCTTGTTTGTTTGTGGTGCAGCCGCCAGAGGTCGAGACCGGAGCC
GATATCGAGTTCGTGCTCGTCGTGGCAGGGGGGCACGACCTCAACGACGA
GTGTATCTTCGAGGTGACATGACGCCCTGGTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTGGTCTGTACCGATACTACCTTCTCATCTTCGAGCGAGCAT
GGTTTGTGCTGGCTGAAGCCCTCTGCATACCCCGTGGTGCACATTTTCCA
CAATTCTACCGGACACCCAACCAACGAAGCATGGACATTCCCTGATGGAG
CCGCTTGAAGGAGATGGTTCCTTAAGGAGGCCCCTCTGTGCAAGCTGCGT
GCTCTGTGCGTCGTCTCGTGTGATTTCCTCACGTCTTTTTGTCGCCACGC
CGACCAATCAAATCGATCAACCAATCGAATCGATCAGGCAATGACCCCGC
CAGAATACGGTCTGGAGGAGTTCGTGGATGGTGTGGAGGCGTTGGACATG
CCGGACGACGTCATCAATAAGGTGAGGGTCAGGACCAATTCGCTGTGCTG
TGGGTGTTTTTTTTTTCCATTTTGCTGTTTAAATATGGATGGTCATTCTT
CGTCTTTCACCAAGCGGGATGATGGTAAACAGGGTGTCGTTCCAGGCAAG
AATCCTTTACCTTGCCGCGAAGAGCTAGCCTTCGTGTTCTGTATCAGCGC
CCTTGGAATCCTGGCAGAGCCTGCTCGCGCGAGTGCATAAATTATGCATA
TCTTCGCATAAACTCATGCTGTGTTGTCGTGTATTCAGTAGTAGCAGCAG
CGGCAGCGACGGTGGCACTGCTGTCGGAGGCTCTTGCTATGAAAATTCTA
GGCTTGTGCTCCGCCGCCCGCTGTTTTTTTGTGGGGGGGGTTCCACACAA
ATGTCAGCATAATAAAACCAAACCGATGACGACAATCACCGGCGGTAGCA
CAAGCCTAGAAATATCGATCTCACCAGCGGCTGTGTCCCGGCAGGTGCAC
GGCGATGCGAGCGAGACTCCCGAGGGCGACGGCGGCGGCATCGCCGGCGG
CAGCAACGGGCCCAAGAAGACGGCGAGCGTGTCCATCCCGCCCTCCGCCG
CCGGCGGCGGCGGCGGCGGCCCCGGCGGCGGGGCAGGCAGTGGGGGGAGC
GGGGTCGTGGCGAGGACGTTCTCCAAGGACAGGAGCGGCGGCGGCGGCGG
CGGCGTCGCCGGTTCGGGCGCCGCGAACGCCTTCGAGAATTACGCGCACG
TTAACGAGGCGCACTCAACCTCCAAGAAGATGTAAGGGTCAAGTGAGGCG
TGTCTGGCTGGCTCTCTGTAAACTGCCGGCCAAGCTAGAACGCGGGGGTT
AGCGAGGGCTTGCTTTGTCCCGCCTGCCCCGTGGTGATGGTGGTGGTGGT
ACTGGTGGTGGTCGTGCTACTAGCTTCGCTGAGTGTCCTGTGTGGTGGCA
AACGAGCTAGCAGTGGGGGCCCGTTGCTGTTGCTTGACGTCCTTCAAATC
CGCCCTTGAGAATACCCCGTCCCCCCGCCATCTCCCCGCGGTGCCGCTCG
TTTCCTTGTTGCGGGCGTGTGACTCGAAGACCGGTTACGACGATCGCGTC
CATGTCCATGATGGGCACCACCATGACGGGGAACGCCCAGACCATCACGT
CTCTCGGGGGAGTGGTTCCCGCACCGGCGTCTCCGTCGGCCAACGCGCCG
GGAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18026:24..3029+

>mRNA_Ecto-sp13_S_contig18026.5529.1 ID=mRNA_Ecto-sp13_S_contig18026.5529.1|Name=mRNA_Ecto-sp13_S_contig18026.5529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18026:24..3029+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAACACGACACAGGCGCTCCCACAGTAGAGACTCCCAGCCCAGCCTGCG
GAGAAGAAGCCTGTCCAGGACCCCGACTCAGCGGTCCATTTGTCCCCCGG
AAGGAATCTTCTCGCTAGACGCGGGAGGCCGCGGCGATTGGGAAACCCTC
AAGGGAGCGGCGGGAGTGAAATCCCCTGGGGGCTGGAGCTCGGGGACGTC
GGAGACTGATTCTACTGACGCAGAGGCGCCGCCAGAGGTCGAGACCGGAG
CCGATATCGAGTTCGTGCTCGTCGTGGCAGGGGGGCACGACCTCAACGAC
GAGTGTATCTTCGAGGCAATGACCCCGCCAGAATACGGTCTGGAGGAGTT
CGTGGATGGTGTGGAGGCGTTGGACATGCCGGACGACGTCATCAATAAGG
TGCACGGCGATGCGAGCGAGACTCCCGAGGGCGACGGCGGCGGCATCGCC
GGCGGCAGCAACGGGCCCAAGAAGACGGCGAGCGTGTCCATCCCGCCCTC
CGCCGCCGGCGGCGGCGGCGGCGGCCCCGGCGGCGGGGCAGGCAGTGGGG
GGAGCGGGGTCGTGGCGAGGACGTTCTCCAAGGACAGGAGCGGCGGCGGC
GGCGGCGGCGTCGCCGGTTCGGGCGCCGCGAACGCCTTCGAGAATTACGC
GCACGTTAACGAGGCGCACTCAACCTCCAAGAAGATACCGGTTACGACGA
TCGCGTCCATGTCCATGATGGGCACCACCATGACGGGGAACGCCCAGACC
ATCACGTCTCTCGGGGGAGTGGTTCCCGCACCGGCGTCTCCGTCGGCCAA
CGCGCCGGGAGAG
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