prot_Ecto-sp13_S_contig18021.5528.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18021.5528.1
Unique Nameprot_Ecto-sp13_S_contig18021.5528.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length292
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18021.5528.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.970e-54
Identity = 222/291 (76.29%), Postives = 225/291 (77.32%), Query Frame = 0 
Query:    1 MSDPMDVTTGPVVPNTAEGSAAPAAADPAPANXXXXXXXXXXXXXXXXVKPTGDAAGHDNSIGNAAVAPTKENPSTEEPSGGDADAAXXXXXXXXXXXXXXXXAKQGGASPNERGDGEPADXXXXXXXXXXXXXXXXSDTKGXXXKEDPMEETNEDVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRGGWDTPAAPGAVVKKGWGDAPPVAPXXXXXXLQELQRKLAEEQVAAAMGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPVRP 291
            MSDPMDVTTG V P+  E SAA  A+      XXXXXXXXXXXXXXXX                AA+APTKENPSTEEPSGGDADAA XXXXXXXXXXXXXXX       P          XXXXXXXXXXXXXXXX D KG   KEDPME TNEDVEA       XXXXXXXXXXXXXXXXXXXXXXXXXXX    TRRGGWDTPAAPGAVVKKGWGDAPPVAPXXXXXXLQELQRKLAEEQVAAAMGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQP  P
Sbjct:    1 MSDPMDVTTGSVAPDAVEISAA--ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIAPTKENPSTEEPSGGDADAAPXXXXXXXXXXXXXXXXXXXXXXPTXX---XXXXXXXXXXXXXXXXXXXXXDAKGGGAKEDPMEGTNEDVEAMAAAAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKRTRRGGWDTPAAPGAVVKKGWGDAPPVAPXXXXXXLQELQRKLAEEQVAAAMGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPSNP 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18021.5528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWX1_ECTSI1.970e-5476.29RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 150..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18021contigEcto-sp13_S_contig18021:110..3209 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18021.5528.1mRNA_Ecto-sp13_S_contig18021.5528.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18021 110..3209 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18021.5528.1 ID=prot_Ecto-sp13_S_contig18021.5528.1|Name=mRNA_Ecto-sp13_S_contig18021.5528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=292bp
MSDPMDVTTGPVVPNTAEGSAAPAAADPAPANNNGSTKDNAAAAAAAAVK
PTGDAAGHDNSIGNAAVAPTKENPSTEEPSGGDADAAPPAALEAAAAPEA
AAVAKQGGASPNERGDGEPADAAAAAAAAASATADAPSDTKGGGAKEDPM
EETNEDVEAMAAAAKSLAQAAAAASAPRKETTESGAAGGAEQPKRKRTRR
GGWDTPAAPGAVVKKGWGDAPPVAPVVPMTPLQELQRKLAEEQVAAAMGQ
APPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPVRP*
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