mRNA_Ecto-sp13_S_contig18005.5519.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18005.5519.1
Unique NamemRNA_Ecto-sp13_S_contig18005.5519.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: A0A6H5KER8_9PHAE (Nodulin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KER8_9PHAE)

HSP 1 Score: 406 bits (1044), Expect = 1.360e-139
Identity = 205/209 (98.09%), Postives = 207/209 (99.04%), Query Frame = 1
Query:    1 QDGRWWALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDVLVSLIGISNALGRLSAGWISDRVVAAGLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDNVDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRTDFNNRSRRAEL 627
            QDGRWW LYVGFFCGAGSGLVVINNVASIA SLGMVSSDVLVSLIGISNALGRLSAGWISDRVVAAGLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDNVDN+GASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRTDFN+RSRRAEL
Sbjct:  241 QDGRWWVLYVGFFCGAGSGLVVINNVASIARSLGMVSSDVLVSLIGISNALGRLSAGWISDRVVAAGLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDNVDNEGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRTDFNSRSRRAEL 449          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: A0A836CQ73_9STRA (Nodulin-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ73_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.190e-35
Identity = 96/226 (42.48%), Postives = 118/226 (52.21%), Query Frame = 1
Query:    1 QDGRWWALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDVLVSLIGISNALGRLSAGWISDRVVAAGLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVG------------------SFVFATGVVALFYDNVDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRTDFNNRSRRAE 624
            QD R+WAL   F CGAGSGLVVINN+ASIA SLG+ SS +LVS+IG+ NA GR +AG             ++L   + L+ C V  LL+AG+   LY     AG  YGSMFS+VLA+  D FG  H+AT YGLLDL                       SF+FAT +V + Y           DC+G  CF GTF     +   A    Y+ LVR       RRAE
Sbjct:  330 QDARFWALLFAFLCGAGSGLVVINNIASIADSLGVPSSSLLVSIIGLCNAGGRFTAG------------ATMLCFNLTLSAC-VSLLLSAGVPELLYLGAALAGIAYGSMFSVVLAVCGDCFGTRHIATIYGLLDLXXXXXXXXXXXXXXXXXXXXXXXSFLFATLLVNVTY-------GIEPDCLGSACFSGTFAFCAGAAAFATATTYIALVRPGLQ--LRRAE 533          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: A0A7S2V0H0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0H0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.780e-32
Identity = 77/195 (39.49%), Postives = 111/195 (56.92%), Query Frame = 1
Query:    1 QDGRWWALYVGFFCGAGSGLVVINNVASIAGSL-GMVSSDVLVSLIGISNALGRLSAGWISDRVVAAGLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDNVDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVV 582
            Q   +W L++ FFCG GSGL+VINNV  IA ++ G   S   VSLIGI N +GR++ GWISD V    + R  LL  +LL    V    A+G ++  YP  V    CYG  F L  A+ AD++G +++A NYG LD  P+ GS++FA G+V  FY+  +N+            +  TF V+ ++C+   V++  V
Sbjct:  354 QQPSFWMLFLAFFCGTGSGLIVINNVQQIARAVTGASPSSYFVSLIGIFNCIGRVTIGWISD-VCREYVTRPQLLCLVLLCMGLVHLAFASGFQAVFYPCLVLTALCYGGQFPLTSAIVADLYGSKYMAQNYGALDTAPSFGSYIFAAGLVNFFYERDENN-----------YYMKTFTVSSITCMSVSVLLLYV 536          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: A0A6J1IDG8_CUCMA (uncharacterized protein LOC111471579 n=1 Tax=Cucurbita maxima TaxID=3661 RepID=A0A6J1IDG8_CUCMA)

HSP 1 Score: 107 bits (267), Expect = 3.210e-25
Identity = 70/198 (35.35%), Postives = 103/198 (52.02%), Query Frame = 1
Query:   10 RWWALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDV--LVSLIGISNALGRLSAGWISDRVVAA-GLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDNVDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRT 594
             +W L+    CG GSGL  INN+  +  SLG  + ++   VSL  I N LGRL +G+  D ++   G  R LL++  LLT      ++A+G    LY   +  G CYGS +SL+ A+TA+IFG  H+ T Y  + +   VGS+V +  V+   YD   + G +S  C G  CF  +F +         VV   + +RT
Sbjct:   18 NFWLLFSAMMCGMGSGLATINNMNQLGQSLGYKTVEIYTFVSLWSIWNFLGRLGSGYAFDLLLRELGWARPLLMAVALLTISVGHIIIASGFSGNLYLGSMIVGICYGSQWSLMPAITAEIFGIRHMGTIYNTITVASPVGSYVLSVRVIGYIYDREASAGDNS--CSGKHCFMTSFLIMAAVAFLGFVVAVALFLRT 213          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: A0A6J1EZJ6_CUCMO (uncharacterized protein LOC111440723 n=2 Tax=Cucurbita TaxID=3660 RepID=A0A6J1EZJ6_CUCMO)

HSP 1 Score: 110 bits (274), Expect = 1.710e-24
Identity = 70/198 (35.35%), Postives = 104/198 (52.53%), Query Frame = 1
Query:   10 RWWALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDV--LVSLIGISNALGRLSAGWISDRVVAA-GLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDNVDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRT 594
             +W L+    CG GSGL  INN+  +  SLG  + ++   VSL  I N LGRL +G+ SD ++   G  R LL++  LLT      ++A+G    LY   V  G CYGS +SL+ A+TA+IFG  H+ T Y  + +   +GS+V +  V+   YD   + G +S  C G  CF  +F +         +V   + +RT
Sbjct:  304 NFWLLFSAMMCGMGSGLATINNMNQLGQSLGYKTVEIHTFVSLWSIWNFLGRLGSGYASDLLLRELGWARPLLMAVALLTMSVGHIIIASGFSGNLYLGSVIVGICYGSQWSLMPAITAEIFGIRHMGTIYNTITVASPIGSYVLSVRVIGYIYDREASAGDNS--CSGKHCFMTSFLIMAAVAFLGFIVAVALFLRT 499          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: A0A7J9BGG9_GOSGO (Nodulin-like domain-containing protein n=6 Tax=Gossypium TaxID=3633 RepID=A0A7J9BGG9_GOSGO)

HSP 1 Score: 108 bits (269), Expect = 2.400e-24
Identity = 67/197 (34.01%), Postives = 100/197 (50.76%), Query Frame = 1
Query:   10 RWWALYVGFFCGAGSGLVVINNVASIAGSLGMVSSD--VLVSLIGISNALGRLSAGWISDRVVAAGLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDNVDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRT 594
             +W L++   CG GSGL  INN++ I  SLG  + +   LV+L  I N LGR   G+ISD  +  G  R L +   L T      ++A+G    LY   +  G CYGS +SL+ A+T +IFG  H+ T +  + +   VGS+VF+  ++   YD V     +S  C G +CF  +F +         +V   +  RT
Sbjct:  162 NFWLLFIAMICGMGSGLATINNISQIGESLGYTTMERSSLVALWSIWNFLGRFGGGFISDIFLHKGWARPLFIVITLATLAFGHLIVASGFPGNLYIGSILVGICYGSQWSLMPAITCEIFGVRHMGTIFNAVAIASPVGSYVFSVRIIGYLYDKVAEGEGNS--CYGTKCFMLSFIIMASVAFFGFLVALALFFRT 356          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: A0A5N6RQB5_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6RQB5_9ROSI)

HSP 1 Score: 110 bits (274), Expect = 3.040e-24
Identity = 66/198 (33.33%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   10 RWWALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDV--LVSLIGISNALGRLSAGWISDRVV-AAGLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDNVDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRT 594
             +W L++   CG GSG+ VINN++ I  SL   + ++  LVSL  I N LGR+ AG++SD ++   G  R  L++A L       F++A G+   LY   +  G CYGS +SL+ A+T++IFG  H+ T +  + +   VGS++ +  V+   YD  +  G     C G +CF  +F +         +V   +  RT
Sbjct:  843 NFWLLFIAMVCGMGSGVAVINNLSQIGESLNYTTLEINTLVSLWCIWNFLGRIGAGYLSDFLLHTRGCARPFLMAATLAAMAAGHFVIAFGLPGILYVGSILVGICYGSQWSLMPAITSEIFGVRHMGTIFNAIGIASPVGSYILSVRVMGYIYDK-EAGGGEDSSCFGTRCFMLSFLIMSSVASLGFLVALALFFRT 1039          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: UPI001C4F80A7 (protein NUCLEAR FUSION DEFECTIVE 4 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F80A7)

HSP 1 Score: 107 bits (267), Expect = 1.970e-23
Identity = 64/188 (34.04%), Postives = 102/188 (54.26%), Query Frame = 1
Query:   16 WALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDVLVSLIGISNALGRLSAGWISDRVVAA-GLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDN--VDNDGAS----SDDCVGPQCFGGTFFV-TGLSCL 555
            W L++ +FCG GSG+ V+NN+A I  SLG+  + +L+SL    N +GRLS G +S+  V +   PR++ ++   +       L A+ +   LY      G CYG+ FS++++  +++FG +H    Y  + LG  +G+F F+  +    YD       G +    S  C+GP CF  TFFV  G+S L
Sbjct:  353 WLLFLVYFCGVGSGITVLNNLAQIGISLGVDDTTILLSLFSFCNFIGRLSGGAVSEYFVRSKAFPRTIWMTCTQVIMIITYLLFASALSGTLYAATALLGICYGAQFSIMISTASELFGLKHFGVIYNFMGLGNPLGAFFFSALLAGYIYDEEAAKQHGLNLLKKSVSCLGPDCFRLTFFVLAGISSL 540          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: A0A2I0W646_9ASPA (Nodulin-like domain-containing protein n=2 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0W646_9ASPA)

HSP 1 Score: 107 bits (266), Expect = 2.090e-23
Identity = 64/194 (32.99%), Postives = 104/194 (53.61%), Query Frame = 1
Query:   16 WALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDVLVSLIGISNALGRLSAGWISDRVVAAG-LPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDN-VDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVR 591
            W L++G+F G GSG+ V+NN+A I  + G+  + +L+ L    N +GRL  G +S+  V +  LPRS+ ++   +       L A G+   LY      G CYG  FS+++   +++FG +H    Y  + LG  +G+F+ +  +    YDN  +  G ++  C+GP CFG TFFV    C    V+  ++ VR
Sbjct:  294 WLLFLGYFLGVGSGVTVLNNLAQIGIAAGVNDTTILLCLFSFCNFVGRLGGGSVSEYYVRSKMLPRSIWMAFTQMIMVLTYLLFALGLNGTLYFSTALLGICYGVQFSVMVPTASELFGLKHFGIIYNFMLLGNPLGAFLLSAILAGYVYDNEAEKQGGTT--CLGPSCFGLTFFVLAGVCALGSVLSVILTVR 485          
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Match: UPI0009F3725B (protein NUCLEAR FUSION DEFECTIVE 4 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F3725B)

HSP 1 Score: 107 bits (266), Expect = 2.630e-23
Identity = 64/194 (32.99%), Postives = 104/194 (53.61%), Query Frame = 1
Query:   16 WALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDVLVSLIGISNALGRLSAGWISDRVVAAG-LPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLCVAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVVALFYDN-VDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVR 591
            W L++G+F G GSG+ V+NN+A I  + G+  + +L+ L    N +GRL  G +S+  V +  LPRS+ ++   +       L A G+   LY      G CYG  FS+++   +++FG +H    Y  + LG  +G+F+ +  +    YDN  +  G ++  C+GP CFG TFFV    C    V+  ++ VR
Sbjct:  352 WLLFLGYFLGVGSGVTVLNNLAQIGIAAGVNDTTILLCLFSFCNFVGRLGGGSVSEYYVRSKMLPRSIWMAFTQMIMVLTYLLFALGLNGTLYFSTALLGICYGVQFSVMVPTASELFGLKHFGIIYNFMLLGNPLGAFLLSAILAGYVYDNEAEKQGGTT--CLGPSCFGLTFFVLAGVCALGSVLSVILTVR 543          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18005.5519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KER8_9PHAE1.360e-13998.09Nodulin-like domain-containing protein n=2 Tax=Ect... [more]
A0A836CQ73_9STRA5.190e-3542.48Nodulin-like-domain-containing protein n=1 Tax=Tri... [more]
A0A7S2V0H0_9STRA4.780e-3239.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6J1IDG8_CUCMA3.210e-2535.35uncharacterized protein LOC111471579 n=1 Tax=Cucur... [more]
A0A6J1EZJ6_CUCMO1.710e-2435.35uncharacterized protein LOC111440723 n=2 Tax=Cucur... [more]
A0A7J9BGG9_GOSGO2.400e-2434.01Nodulin-like domain-containing protein n=6 Tax=Gos... [more]
A0A5N6RQB5_9ROSI3.040e-2433.33Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
UPI001C4F80A71.970e-2334.04protein NUCLEAR FUSION DEFECTIVE 4 n=1 Tax=Macadam... [more]
A0A2I0W646_9ASPA2.090e-2332.99Nodulin-like domain-containing protein n=2 Tax=Epi... [more]
UPI0009F3725B2.630e-2332.99protein NUCLEAR FUSION DEFECTIVE 4 n=1 Tax=Dendrob... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18005contigEcto-sp13_S_contig18005:583..3379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score406.8
Seed ortholog evalue6.3e-111
Seed eggNOG ortholog2880.D8LB59
Model size630
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.Nodulin-like
EggNOG OGs28IZG@1,2QSJM@2759
Cds size630
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.9797046-CDS-Ecto-sp13_S_contig18005:582..7051681462930.9797046-CDS-Ecto-sp13_S_contig18005:582..705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18005 583..705 +
1681462930.9914467-CDS-Ecto-sp13_S_contig18005:1076..12251681462930.9914467-CDS-Ecto-sp13_S_contig18005:1076..1225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18005 1077..1225 +
1681462931.0008802-CDS-Ecto-sp13_S_contig18005:2027..21641681462931.0008802-CDS-Ecto-sp13_S_contig18005:2027..2164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18005 2028..2164 +
1681462931.013686-CDS-Ecto-sp13_S_contig18005:3158..33791681462931.013686-CDS-Ecto-sp13_S_contig18005:3158..3379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18005 3159..3379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18005.5519.1prot_Ecto-sp13_S_contig18005.5519.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18005 583..3379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18005.5519.1

>prot_Ecto-sp13_S_contig18005.5519.1 ID=prot_Ecto-sp13_S_contig18005.5519.1|Name=mRNA_Ecto-sp13_S_contig18005.5519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
QDGRWWALYVGFFCGAGSGLVVINNVASIAGSLGMVSSDVLVSLIGISNA
LGRLSAGWISDRVVAAGLPRSLLLSAMLLTTCGVDFLLAAGIRSFLYPLC
VAAGCCYGSMFSLVLALTADIFGPEHVATNYGLLDLGPAVGSFVFATGVV
ALFYDNVDNDGASSDDCVGPQCFGGTFFVTGLSCLCACVVVYVVLVRTDF
NNRSRRAEL*
back to top

mRNA from alignment at Ecto-sp13_S_contig18005:583..3379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18005.5519.1 ID=mRNA_Ecto-sp13_S_contig18005.5519.1|Name=mRNA_Ecto-sp13_S_contig18005.5519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2797bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18005:583..3379+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATGGGCGATGGTGGGCTCTGTACGTGGGCTTTTTTTGCGGCGCCGG TTCGGGGCTGGTCGTGATCAACAACGTCGCGTCCATCGCTGGGTCTCTAG GGATGGTCTCGAGCGACGTGCTGGTGAGCGAGTGGGAACGAACGGATTCG AGAGACGAGGTTTTTTATTACATCGGTCTCATCAACCGCGGTTTCTCGTT ACGCCGTCCCTAATTTTTGAGTTGGGGCCTAGTTTAGTTCCAGAGTTGGC AGAGCGGAGAAAAGAGAAGAGCGGGGAAAAAACGAAGTCAGAGAACGAAA GAGAGCGATCAAAAGAGAAGAGAGAAGACAAACGGCAGAGATAGACGGAC AGACAGACAAACAGAGACGGGGGCAGAGAGGGGGACAACAAGGCGCGCGC TGGAGGTAAGGGTAATGGGGGTGTGGGCGCCCAGAACTCCTCGTGGCCCC TGTCTTTGAGTTCAACCCCCACCTGCGCTGTTTCCGTCTTTCAGGTGTCG CTTATCGGGATTTCGAACGCCCTGGGGAGACTGAGCGCGGGCTGGATATC AGACCGAGTCGTCGCTGCGGGGCTTCCGAGATCGTTGCTCTTGTCCGCGA TGCTGCTCACCACTTGCGGTGTGGACTTCCTTCTTGCCGCTGGGTGAGGA CACGCAGATTGCGGGGGGGGGGAAACAACCGTGGTAAATTTCGGCGGACT CGGGATCAGTTGTTTCCTTTTTTTGTGGACAGCGCTTCCTTGCTGTTTGT CTCCTGAGGAAGGGCAAACGTGGGGAGACCAGAGCAGTCCGCATCCATGC AGAAGTCGCCACCACCTACAGAGGGGATCCCTGTTTTGTGCCGGTATGCG CCCAGAAATTCCACCGGCAATGCTCAACCGGACCGGCACTACTGACAATG ACTTACTTGGAACTTCACTGTGTGCCCGCCGAAAACACCGGGACTATCCC GGGCATTGACACTATTTGACCGCCACGAAACAAGGTCGCTCTCTGTACAA GAAGCTCTGTATTGTTGCACGAGGCTCTTGTCTTGTGTTGTCCGTGGGGT TATCCAACATCGACTATGCAGGTTGTAGTGTAGGATTCGCAACAAAGCAC TTCCTCTTATGGTCACTTATGGTCACTTATTAAGACCATATATCTCTTCG TTTAGCCTGAATTTCTTAACTCCAGGGTGCTAAACAGGGCGGCATGTTTT GTACCCCGGGCTCTACTGCTGGAAGCACATTGTTGACCTGTCGGGGAAAT AACCGGTATCGATACATAGGGTCCTTCCTCATCACTGTGTATAGCGCATC CTACTCACTTGTCGTTTGTCGTTTTTCGTTTTTTTTTTTGTGTGTCAAGC TCGACTTGTTCAATTACACCAATTATTTTTCCGCAAGACCCTTCTCTTCA TGTTTTTTCCTTTGTTGTTTTTGGTGCTGCTGCTGGAAAACCCAGGATCC GATCTTTCCTGTACCCTCTCTGCGTGGCCGCGGGGTGTTGCTACGGGAGC ATGTTTTCATTGGTGCTAGCACTGACGGCCGACATATTCGGCCCTGAGCA CGTGGCCACCAACTACGGCCTCCTCGATCTCGGTGAGACACAACAGTCAG TCGTTCGTTAGTCAATCCGAGGGGTTTACTGGCTTGCTTTGAAGGATGGT GGTGTTAGCAGTAGTATGTCTTTTGTGTGTGCTTTTACCCATGCACGGTT CTAGTCGTATGTGTTTCTCGGTCGCATGTCTTTGGCCGCCCACAAGCACA GCACACGAGATTGCGCGCGGCGAGAGTTGTGTTTTTCCCCGAGCTTATGT TTTGCGATGCTGGCCATTGCTCAAGTCGTGAGCCTGAACGCGTGGTGATA CACAAGACCGGCCGTTGGCTCCCTAAACCTCTATTTTTTCACGTGCTCGT TACATGCTTGTCGTCGTGGCGACAAATTGTCGCCCCCCCCCCCGGGTGTT TGCCATCGGGGTTGGGTTGTCGTCGTTTGGCAGCGATGTTATGAAACAAG CCGATCACTTCGTGAGCTCGGCAACCAGGTTACCACTTTTTTTTGGCCTT TTTTTTGTTGTTGCAGTTACCATGAATGGAGGTCGAGTAGATTTTGTTTT GCGGGGTCGAGAACCCTCACTCTGCGCAAGGGGGAAAGTCGCACGCACTG TGTTAAAGTTGGTCAGCAGTCTCGAGGCAGTTACGAAGTGCTTACAACTG TCTCTGGAAGTGAAAGCACCAGAAAATAAATTAAGTCATACGCAGCTGTC ATCCGTACGCAAGGAAGTAAGCACAAGATGCCAAGCACCCCTGGCAGGAT GCAGCGCACCGTTCATGCGACTCACCGAATACCTCACGGCGCTTCACGCT TGGTGATGTGCTATGATAGCCTGGTCCGGTAAGGACCCAGCGTGCTTCGT CCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCA CGACTATGAGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA ACCCCCGCGCCCCCGCCCCGCCCCCCCCCCCCCCCCCCCCCCTCGCTTCC TGGACTGGCTTCTTCTGCGACGTCAGGCCCGGCTGTCGGTAGCTTCGTTT TCGCGACCGGCGTGGTGGCGTTGTTCTACGACAACGTGGACAACGACGGT GCCTCTTCCGACGATTGCGTGGGGCCTCAGTGCTTCGGCGGGACGTTCTT CGTGACGGGACTGTCATGTCTCTGCGCCTGCGTCGTCGTGTACGTGGTGT TAGTGCGGACGGATTTCAACAACAGGTCCCGCCGGGCGGAGCTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18005:583..3379+

>mRNA_Ecto-sp13_S_contig18005.5519.1 ID=mRNA_Ecto-sp13_S_contig18005.5519.1|Name=mRNA_Ecto-sp13_S_contig18005.5519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18005:583..3379+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATGGGCGATGGTGGGCTCTGTACGTGGGCTTTTTTTGCGGCGCCGG
TTCGGGGCTGGTCGTGATCAACAACGTCGCGTCCATCGCTGGGTCTCTAG
GGATGGTCTCGAGCGACGTGCTGGTGTCGCTTATCGGGATTTCGAACGCC
CTGGGGAGACTGAGCGCGGGCTGGATATCAGACCGAGTCGTCGCTGCGGG
GCTTCCGAGATCGTTGCTCTTGTCCGCGATGCTGCTCACCACTTGCGGTG
TGGACTTCCTTCTTGCCGCTGGGATCCGATCTTTCCTGTACCCTCTCTGC
GTGGCCGCGGGGTGTTGCTACGGGAGCATGTTTTCATTGGTGCTAGCACT
GACGGCCGACATATTCGGCCCTGAGCACGTGGCCACCAACTACGGCCTCC
TCGATCTCGGCCCGGCTGTCGGTAGCTTCGTTTTCGCGACCGGCGTGGTG
GCGTTGTTCTACGACAACGTGGACAACGACGGTGCCTCTTCCGACGATTG
CGTGGGGCCTCAGTGCTTCGGCGGGACGTTCTTCGTGACGGGACTGTCAT
GTCTCTGCGCCTGCGTCGTCGTGTACGTGGTGTTAGTGCGGACGGATTTC
AACAACAGGTCCCGCCGGGCGGAGCTGTGA
back to top