mRNA_Ecto-sp13_S_contig18004.5518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18004.5518.1
Unique NamemRNA_Ecto-sp13_S_contig18004.5518.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18004.5518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18004contigEcto-sp13_S_contig18004:538..1088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size551
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.929533-UTR-Ecto-sp13_S_contig18004:537..7051681462930.929533-UTR-Ecto-sp13_S_contig18004:537..705Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18004 538..705 +
1681462930.9499946-UTR-Ecto-sp13_S_contig18004:1035..10881681462930.9499946-UTR-Ecto-sp13_S_contig18004:1035..1088Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18004 1036..1088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.9398675-CDS-Ecto-sp13_S_contig18004:705..10351681462930.9398675-CDS-Ecto-sp13_S_contig18004:705..1035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18004 706..1035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18004.5518.1prot_Ecto-sp13_S_contig18004.5518.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18004 706..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18004.5518.1

>prot_Ecto-sp13_S_contig18004.5518.1 ID=prot_Ecto-sp13_S_contig18004.5518.1|Name=mRNA_Ecto-sp13_S_contig18004.5518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MLRAMGDWTLTVTKSPKTKYEDTLFSNKEMSTAATDTPTCRDAARFAHKP
VLDATRRRHENPEHNNLRTRNQYPLLCPPCRYKLQVEGFLRGWMFAKMKK
RTKSAFLSC*
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mRNA from alignment at Ecto-sp13_S_contig18004:538..1088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18004.5518.1 ID=mRNA_Ecto-sp13_S_contig18004.5518.1|Name=mRNA_Ecto-sp13_S_contig18004.5518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18004:538..1088+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAAGGCAGTCCCACTCCACGGCGAGGTTTCGCGGTTTGTCGGAACCG
CCCCCTCGTCACTTTGGTATGCTTCCGAGTGGAAACCGTATGCGTCATAA
CGTGCCGTTCAAACCACCAGCGTGCTTGGAAGTAGAGGCATTCATGCGTG
GCCAGCGTTTGACAACTTATGCTGCGGGCTATGGGCGACTGGACACTCAC
GGTGACAAAATCGCCTAAAACAAAGTACGAGGACACCCTCTTTTCGAACA
AGGAGATGTCAACCGCCGCAACAGATACTCCCACGTGCCGAGACGCGGCT
CGCTTTGCTCATAAACCCGTGCTCGATGCCACCCGCAGACGCCATGAAAA
CCCGGAACACAACAACTTGCGAACCAGAAATCAGTACCCTCTGCTGTGCC
CCCCCTGTAGATACAAGCTTCAAGTCGAAGGTTTTTTGCGTGGCTGGATG
TTTGCTAAAATGAAAAAACGCACGAAAAGTGCCTTTCTGTCCTGTTGAAC
AACTTCGTGTGCAATTGCGCTATTTTTTTTCTCGGTCGATCAGGATCCCG
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18004:538..1088+

>mRNA_Ecto-sp13_S_contig18004.5518.1 ID=mRNA_Ecto-sp13_S_contig18004.5518.1|Name=mRNA_Ecto-sp13_S_contig18004.5518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18004:538..1088+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGGGCTATGGGCGACTGGACACTCACGGTGACAAAATCGCCTAA
AACAAAGTACGAGGACACCCTCTTTTCGAACAAGGAGATGTCAACCGCCG
CAACAGATACTCCCACGTGCCGAGACGCGGCTCGCTTTGCTCATAAACCC
GTGCTCGATGCCACCCGCAGACGCCATGAAAACCCGGAACACAACAACTT
GCGAACCAGAAATCAGTACCCTCTGCTGTGCCCCCCCTGTAGATACAAGC
TTCAAGTCGAAGGTTTTTTGCGTGGCTGGATGTTTGCTAAAATGAAAAAA
CGCACGAAAAGTGCCTTTCTGTCCTGTTGA
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