mRNA_Ecto-sp13_S_contig18000.5517.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18000.5517.1
Unique NamemRNA_Ecto-sp13_S_contig18000.5517.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18000.5517.1 vs. uniprot
Match: A0A6H5L5S3_9PHAE (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5S3_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 4.380e-40
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:   34 AVLIDPGRFPLLLGRRFHESVVRGLAANLLEVEVESPVVEYCEALITQGVDVQRQALKVLEPALNDMEDENHLPDFHEISS-SSSSSKGLASESESERD 327
            AVLIDPG FPLLLGRRFHESVVRGLAANLLEVEVESPVVEYCEAL+TQG DVQRQALKVLEP LNDMEDE+  PD  EI   SSSSS G+AS+SE ERD
Sbjct:  219 AVLIDPGSFPLLLGRRFHESVVRGLAANLLEVEVESPVVEYCEALVTQGDDVQRQALKVLEPTLNDMEDESDFPDSDEIIIVSSSSSNGVASDSEGERD 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18000.5517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5S3_9PHAE4.380e-4083.84Fe2OG dioxygenase domain-containing protein (Fragm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18000contigEcto-sp13_S_contig18000:1019..2810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size331
Hectar predicted targeting categoryother localisation
Exons3
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.8745139-CDS-Ecto-sp13_S_contig18000:1020..11401681462930.8745139-CDS-Ecto-sp13_S_contig18000:1020..1140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18000 1021..1140 -
1681462930.8841007-CDS-Ecto-sp13_S_contig18000:1889..19641681462930.8841007-CDS-Ecto-sp13_S_contig18000:1889..1964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18000 1890..1964 -
1681462930.9008617-CDS-Ecto-sp13_S_contig18000:2678..28101681462930.9008617-CDS-Ecto-sp13_S_contig18000:2678..2810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18000 2679..2810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18000.5517.1prot_Ecto-sp13_S_contig18000.5517.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18000 1021..2810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18000.5517.1

>prot_Ecto-sp13_S_contig18000.5517.1 ID=prot_Ecto-sp13_S_contig18000.5517.1|Name=mRNA_Ecto-sp13_S_contig18000.5517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
PVEEGGRPGGGAVLIDPGRFPLLLGRRFHESVVRGLAANLLEVEVESPVV
EYCEALITQGVDVQRQALKVLEPALNDMEDENHLPDFHEISSSSSSSKGL
ASESESERD
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mRNA from alignment at Ecto-sp13_S_contig18000:1019..2810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18000.5517.1 ID=mRNA_Ecto-sp13_S_contig18000.5517.1|Name=mRNA_Ecto-sp13_S_contig18000.5517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18000:1019..2810- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGTCGAAGAGGGAGGGAGACCTGGGGGTGGTGCCGTCCTGATCGACCC
CGGGAGGTTTCCGCTGCTGCTGGGCCGCCGTTTCCACGAGAGCGTTGTCA
GGGGCCTCGCGGCTAACCTGTTGGAGGTGGAGGTGAGGATGGGGGGTGGA
GATGCTAGCTTCGCACGCGATGTTTTGAATTTTGTCGGCGGATTCCCTCG
TGTGTGGCAATGATTTGGGCACCTGAGGGCTTCGGGAGGCGGGTGTTTTT
GGTTCGACTACCTGACGTGCCCCCGTCACCCTAGTGCGTCACCGACAAGT
TTATCTCCCGCATCGGCTTGTGATCGCGAGCGCAGACAAGACGAAATATT
ATCGGGATGAGTTGCCCCCGTTTTCCCTCCAGACGAGCTTAACCCCCGGT
GCACGTTGTCGAAAAACGGTATGGTAGCTCGAGGGTTTAAAGCCCCCAAC
ATCAGTTTTCTTGTTCGAGCCAACGCATGAGGAGGAAACTCTCTTGGCGT
GTATTGTGTTGGGGCCAGCGACCTCGGGTTTTTGTTTTGAGATTTTGCCG
AGCTCTCCCCACCTCCCCCACCTCTCCTACGCCGCTCTCATTCGTCGTGT
CCCCTCGCTTCCTTTCCCCCGTCCCCCCATTTTTTCCTTGATCTGCGTCT
TCCTGTTCTATCTTTGTCTCCTCCGTCCCCTCCTCCGCCCCCCCTGTCTG
TCTTGTCTTCTACCTGTTTGTCTGTTTGTCTGTCTGTCTGTCTGTCTATT
TGTCTAGTTGTTTTCCGTCTACCCGTCTAATCTTTGTTCCTCGTCTTCCC
CTCCCCCCTCCCCCTCCCGCTTTGCTTTGTCCATCTTACGGATCAGGTCG
AATCGCCCGTGGTCGAGTACTGCGAAGCGCTCATCACCCAAGGTGTTGAC
GTTCAACGCCAGGCACTCAAGGTAGATGTCATGCTGTGCAGCGCTGAGTT
GTACCCAGCCATACAAAGTGAAGCAGCTGGCGCCAAACAGCGGTGTTGTT
GTGAGGATGTTCGGGGTTGTGCTCGACGCGTCTACTTCGCCTACACACGG
TCGATATTCGTCGAGATGAGCAATCTATGCACATCGTTTTGTTGTTTTGC
GTGATGGACCCCAAGTTAGCTTAAGATACCAAGGAGTTGGTCTTGGGTAG
GATGATTCCTGTTCGCCCCCAGTGTTGTATTTTCGTCTACCGGTGTTGTC
ACCCGATGCGCTTTGTTCTCCGTGGAGGGTGTGCCAGTACAAAAGTCAGC
AAAAGCAGCTCCGAAATGGGAGCCCGTTCTGTCCTAGTTTTCCATCCATA
TGCCGACGGAGCCTTGTGCGAAGCATGATGGGAAGTGGTGGAATATTATT
GGTAGCTCATGTTGTACCGTTAGGAGTTCTATTGATTCGTTTTGGTCTTG
AATTAGCGGTTGGCAACACACACGTCATCCACGCGACACGCGCTCTTACG
TCTCCATCTGCCTATGTTTTTCTCCCTCCCTCTCTCTCTACCTCTCGCTT
TCTCTCTCTCCCCTAGCGTTTATCGTGTGCCTCATTTGAAGCGTCGCCCT
CCCAATTCCGATTTCACTCTCTGTCGACCTCTCGACATGATCATCTCCCT
ACGTGGCCGGGTACACAACCTTTTACCACTCCGACCTTTTTCTTTCTCAT
GCACCCACAAACGCCTGCAGGTCCTTGAGCCCGCGCTCAACGACATGGAG
GACGAAAACCACTTGCCAGATTTTCATGAAATCAGCAGTAGCAGCAGTAG
TAGCAAGGGGTTGGCGAGCGAGAGCGAGAGCGAAAGGGATGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18000:1019..2810-

>mRNA_Ecto-sp13_S_contig18000.5517.1 ID=mRNA_Ecto-sp13_S_contig18000.5517.1|Name=mRNA_Ecto-sp13_S_contig18000.5517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18000:1019..2810- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGTCGAAGAGGGAGGGAGACCTGGGGGTGGTGCCGTCCTGATCGACCC
CGGGAGGTTTCCGCTGCTGCTGGGCCGCCGTTTCCACGAGAGCGTTGTCA
GGGGCCTCGCGGCTAACCTGTTGGAGGTGGAGGTCGAATCGCCCGTGGTC
GAGTACTGCGAAGCGCTCATCACCCAAGGTGTTGACGTTCAACGCCAGGC
ACTCAAGGTCCTTGAGCCCGCGCTCAACGACATGGAGGACGAAAACCACT
TGCCAGATTTTCATGAAATCAGCAGTAGCAGCAGTAGTAGCAAGGGGTTG
GCGAGCGAGAGCGAGAGCGAAAGGGAT
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