mRNA_Ecto-sp13_S_contig18.5512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18.5512.1
Unique NamemRNA_Ecto-sp13_S_contig18.5512.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: D7G210_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G210_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.690e-47
Identity = 86/108 (79.63%), Postives = 93/108 (86.11%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEIFSYSY-FVLIGH-----QDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            SPWAPYLRLLPT SEMEA+HPLFFDNATIASFEGSDVQA LRERR SE+  ++  F + G      QDVLG+GWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLV+
Sbjct:  584 SPWAPYLRLLPTLSEMEAYHPLFFDNATIASFEGSDVQASLRERRDSEMAGFTTKFAVEGSAGRELQDVLGVGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVN 691          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S2A5C2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A5C2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.910e-17
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEI-----FSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            S W PYL+++PT  E++   PLFFD   I   EGS V+  L + R +       FS  Y  L+     + L W   +++LWA +I+DSR IWW G+++LVPLLDLV+
Sbjct:  182 SQWWPYLKIIPTVEEVKNKSPLFFDEEKIDYLEGSAVKMRLVQYRETAQNRFAHFSTDYDTLLALGSEIALDW---DKFLWAYSILDSRSIWWDGKRNLVPLLDLVN 285          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S4RAH9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RAH9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.440e-17
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEI-----FSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            S W PYL+++PT  E++   PLFFD   I   EGS V+  L + R +       FS  Y  L+     + L W   +++LWA +I+DSR IWW G+++LVPLLDLV+
Sbjct:  784 SQWWPYLKIIPTVEEVKNKSPLFFDEEKIDYLEGSAVKMRLVQYRETAQNRFAHFSTDYDTLLALGSEIALDW---DKFLWAYSILDSRSIWWDGKRNLVPLLDLVN 887          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S3UNX2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNX2_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 3.610e-14
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAHHP-LFFDNATIASFEGSDVQAPLRERRASEIFSYSYFVLIGHQDV--------LGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            S WAPYL  LP+ +++EA  P LF+D A +    GSDVQ         E+ +Y   V   H+           G G    E + WA  I+D+R IWWGG +HLVPLLD+++
Sbjct:  316 SRWAPYLDTLPSLADLEAAPPPLFYDQARLDLLHGSDVQL--------EVMNYQDQVKEWHRKFAAALGAAGFGAGAAGFELFRWAQHILDTRSIWWGGERHLVPLLDMIN 418          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S2G430_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G430_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.090e-13
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEIFSYSYFVLIGHQDVLG-----LGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            S + PYLRLLPT  E+  H P+ +D   +A  +GSD++A ++  R  ++    +  L      +       G ++  ++ WA  I+DSRCIWWGG +HLVPLLDL++
Sbjct:   63 SKYWPYLRLLPTLEEI--HPPITYDGHEMALLDGSDLKASIK--RMDKLVGRHWDGLKQFASTVSPIFAESGGLSEAQFRWAHYILDSRCIWWGGGRHLVPLLDLIN 165          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S2DGL9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGL9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.310e-13
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   13 PYLRLLPTPSEMEAHHP-LFFDNATIASFEGSDVQAPLRERRASEIFSYSYFVLI-GHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            PYLRLLP+  ++ A +P L FD+  +A  EG+D++  +   +   +  +   V    H + +    +T + + WA  I+DSRCIWW G +HLVPLLDLV+
Sbjct:  260 PYLRLLPSQDDLSAMNPPLMFDDGDMARLEGTDMKGSVHAYKKLVLRHWDGLVHFKDHLEGVFGDVLTEDVFRWAHFIMDSRCIWWNGSRHLVPLLDLVN 359          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S2M9M8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M9M8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.130e-13
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAHHPLFFDNATI-ASFEGSDVQAPLRERRASEIFSYSYFVL-IGHQDVLGLGWITLERYL--WAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            S W PYL LLPT  E+ + HPLFF+   +     GSDV+  +   +      ++     +   +VLG   + L++ +  WA A++DSR IWW GR+HL PLLDLV+
Sbjct:  820 SEWWPYLDLLPTVQEVSSSHPLFFEEDEMNLHLGGSDVRKFILRNQGRAFERHAALASDVDVHEVLGSD-VILDKSIVYWATAMLDSRSIWWDGRRHLTPLLDLVN 924          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: T0PWY5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PWY5_SAPDV)

HSP 1 Score: 72.0 bits (175), Expect = 1.560e-12
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEIFSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            S W PYL LLP  +E+ A  PLF+  A +A  EG+D+   +   R     SY     +  +DV  L   T  R+L     +D+R IWWGG +HLVP+LD+V+
Sbjct:  573 SAWFPYLDLLPALNEVPAT-PLFYTEAELALLEGTDLGGLVLAYRDQVTKSYDAIRRVFPRDVFSLAAYTHTRFL-----LDTRSIWWGGERHLVPILDMVN 668          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: H3GQB9_PHYRM (SET domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQB9_PHYRM)

HSP 1 Score: 70.1 bits (170), Expect = 7.390e-12
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAH--HPLFFDNA--TIASFEGSDVQAPL---RERRASEIFSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            S W PYL +LP   +  +    PLF++     + S EG+D+   +   R+R A      S  +     D     W+T  R+LWA A++DSR IWWG ++HLVPLLD+V+
Sbjct:  644 SHWKPYLDMLPVLDDQASALGSPLFYEEGGEQLKSLEGTDLLLLVTNYRQRVAQAYVLLSDSLKASASDETST-WLTQRRFLWANAMLDSRSIWWGSQRHLVPLLDMVN 751          
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A662X6F8_9STRA (SET domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6F8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.880e-11
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 SPWAPYLRLLPTPSEMEAHH---PLFFDNATIASFEGSDVQAPLR----------ERRASEIFSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
            S W PYL +LP+ ++  + +   PLF++       EG  ++  L            +R +E +++  + L   +    L W+T  R+ WA A++DSR IWWGG++HLVPLLD+V+
Sbjct:  659 SRWKPYLDMLPSLNDDGSSNLGSPLFYEA------EGEQLELLLDTDLLQLVVNYRQRVAESYAFLSWELQRSEHREALKWLTARRFQWANAMLDSRSIWWGGQRHLVPLLDMVN 767          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G210_ECTSI1.690e-4779.63SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2A5C2_9STRA4.910e-1742.06Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RAH9_9STRA5.440e-1742.06Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3UNX2_HETAK3.610e-1439.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2G430_9STRA3.090e-1338.32Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DGL9_9STRA4.310e-1339.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2M9M8_9STRA6.130e-1339.62Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
T0PWY5_SAPDV1.560e-1240.20Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
H3GQB9_PHYRM7.390e-1237.61SET domain-containing protein n=2 Tax=Phytophthora... [more]
A0A662X6F8_9STRA1.880e-1133.91SET domain-containing protein n=2 Tax=Nothophytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18contigEcto-sp13_S_contig18:56263..56842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score173.7
Seed ortholog evalue4.4e-41
Seed eggNOG ortholog2880.D7G210
Model size306
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E0UK@1,2S886@2759
EC2.1.1.43
Cds size306
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.5372965-CDS-Ecto-sp13_S_contig18:56262..564241681462930.5372965-CDS-Ecto-sp13_S_contig18:56262..56424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18 56263..56424 -
1681462930.5503635-CDS-Ecto-sp13_S_contig18:56698..568421681462930.5503635-CDS-Ecto-sp13_S_contig18:56698..56842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18 56699..56842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18.5512.1prot_Ecto-sp13_S_contig18.5512.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18 56263..56842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18.5512.1

>prot_Ecto-sp13_S_contig18.5512.1 ID=prot_Ecto-sp13_S_contig18.5512.1|Name=mRNA_Ecto-sp13_S_contig18.5512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEIF
SYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDL
VS
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mRNA from alignment at Ecto-sp13_S_contig18:56263..56842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18.5512.1 ID=mRNA_Ecto-sp13_S_contig18.5512.1|Name=mRNA_Ecto-sp13_S_contig18.5512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=580bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18:56263..56842- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCCCTGGGCGCCGTATCTTCGTCTTCTGCCGACGCCGAGCGAAATGGA AGCGCACCACCCGCTGTTCTTCGACAACGCGACGATCGCCTCCTTCGAGG GCTCGGACGTCCAGGCGCCCTTGAGGGAGCGCCGCGCTTCGGAGGTGGCC CGCTTCACTACAAAGTTCGCCACCGAAGGGCCCATCGGCCGAGAGTTACA GGTGCCCTAGACCTGAAATTCCCCGTTGTACAGTTCAGGCTTCGGCAGGA AGGTTCCGTAGCCATTCTGATTCTGGGACCGAATATAGGCAGCTGTTACG ACCCAGGAAATAACACCTATGCACGCCTCCTGGTAAGGAGCGAAACAGCC CGCACTTGAGTAGGTCCAGAAAATTACCGGAAAAAAACTGTTTGCGGTAG TGTGACGTGGTCGTTGAGATCTTCTCCTACTCTTATTTTGTCCTAATCGG CCACCAGGACGTGCTCGGTCTGGGGTGGATAACCCTGGAGCGTTACCTTT GGGCCGCCGCGATCGTGGATAGCCGCTGCATCTGGTGGGGTGGACGGAAG CACCTAGTGCCCTTGCTAGATCTCGTGAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18:56263..56842-

>mRNA_Ecto-sp13_S_contig18.5512.1 ID=mRNA_Ecto-sp13_S_contig18.5512.1|Name=mRNA_Ecto-sp13_S_contig18.5512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18:56263..56842- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCCCTGGGCGCCGTATCTTCGTCTTCTGCCGACGCCGAGCGAAATGGA
AGCGCACCACCCGCTGTTCTTCGACAACGCGACGATCGCCTCCTTCGAGG
GCTCGGACGTCCAGGCGCCCTTGAGGGAGCGCCGCGCTTCGGAGATCTTC
TCCTACTCTTATTTTGTCCTAATCGGCCACCAGGACGTGCTCGGTCTGGG
GTGGATAACCCTGGAGCGTTACCTTTGGGCCGCCGCGATCGTGGATAGCC
GCTGCATCTGGTGGGGTGGACGGAAGCACCTAGTGCCCTTGCTAGATCTC
GTGAGT
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