mRNA_Ecto-sp13_S_contig18.5512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: D7G210_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G210_ECTSI) HSP 1 Score: 171 bits (434), Expect = 1.690e-47 Identity = 86/108 (79.63%), Postives = 93/108 (86.11%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEIFSYSY-FVLIGH-----QDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
SPWAPYLRLLPT SEMEA+HPLFFDNATIASFEGSDVQA LRERR SE+ ++ F + G QDVLG+GWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLV+
Sbjct: 584 SPWAPYLRLLPTLSEMEAYHPLFFDNATIASFEGSDVQASLRERRDSEMAGFTTKFAVEGSAGRELQDVLGVGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVN 691
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S2A5C2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A5C2_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.910e-17 Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEI-----FSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
S W PYL+++PT E++ PLFFD I EGS V+ L + R + FS Y L+ + L W +++LWA +I+DSR IWW G+++LVPLLDLV+
Sbjct: 182 SQWWPYLKIIPTVEEVKNKSPLFFDEEKIDYLEGSAVKMRLVQYRETAQNRFAHFSTDYDTLLALGSEIALDW---DKFLWAYSILDSRSIWWDGKRNLVPLLDLVN 285
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S4RAH9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RAH9_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 5.440e-17 Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEI-----FSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
S W PYL+++PT E++ PLFFD I EGS V+ L + R + FS Y L+ + L W +++LWA +I+DSR IWW G+++LVPLLDLV+
Sbjct: 784 SQWWPYLKIIPTVEEVKNKSPLFFDEEKIDYLEGSAVKMRLVQYRETAQNRFAHFSTDYDTLLALGSEIALDW---DKFLWAYSILDSRSIWWDGKRNLVPLLDLVN 887
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S3UNX2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNX2_HETAK) HSP 1 Score: 76.6 bits (187), Expect = 3.610e-14 Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAHHP-LFFDNATIASFEGSDVQAPLRERRASEIFSYSYFVLIGHQDV--------LGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
S WAPYL LP+ +++EA P LF+D A + GSDVQ E+ +Y V H+ G G E + WA I+D+R IWWGG +HLVPLLD+++
Sbjct: 316 SRWAPYLDTLPSLADLEAAPPPLFYDQARLDLLHGSDVQL--------EVMNYQDQVKEWHRKFAAALGAAGFGAGAAGFELFRWAQHILDTRSIWWGGERHLVPLLDMIN 418
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S2G430_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G430_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.090e-13 Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEIFSYSYFVLIGHQDVLG-----LGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
S + PYLRLLPT E+ H P+ +D +A +GSD++A ++ R ++ + L + G ++ ++ WA I+DSRCIWWGG +HLVPLLDL++
Sbjct: 63 SKYWPYLRLLPTLEEI--HPPITYDGHEMALLDGSDLKASIK--RMDKLVGRHWDGLKQFASTVSPIFAESGGLSEAQFRWAHYILDSRCIWWGGGRHLVPLLDLIN 165
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S2DGL9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGL9_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.310e-13 Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 13 PYLRLLPTPSEMEAHHP-LFFDNATIASFEGSDVQAPLRERRASEIFSYSYFVLI-GHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
PYLRLLP+ ++ A +P L FD+ +A EG+D++ + + + + V H + + +T + + WA I+DSRCIWW G +HLVPLLDLV+
Sbjct: 260 PYLRLLPSQDDLSAMNPPLMFDDGDMARLEGTDMKGSVHAYKKLVLRHWDGLVHFKDHLEGVFGDVLTEDVFRWAHFIMDSRCIWWNGSRHLVPLLDLVN 359
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A7S2M9M8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M9M8_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 6.130e-13 Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAHHPLFFDNATI-ASFEGSDVQAPLRERRASEIFSYSYFVL-IGHQDVLGLGWITLERYL--WAAAIVDSRCIWWGGRKHLVPLLDLVS 306
S W PYL LLPT E+ + HPLFF+ + GSDV+ + + ++ + +VLG + L++ + WA A++DSR IWW GR+HL PLLDLV+
Sbjct: 820 SEWWPYLDLLPTVQEVSSSHPLFFEEDEMNLHLGGSDVRKFILRNQGRAFERHAALASDVDVHEVLGSD-VILDKSIVYWATAMLDSRSIWWDGRRHLTPLLDLVN 924
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: T0PWY5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PWY5_SAPDV) HSP 1 Score: 72.0 bits (175), Expect = 1.560e-12 Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEIFSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
S W PYL LLP +E+ A PLF+ A +A EG+D+ + R SY + +DV L T R+L +D+R IWWGG +HLVP+LD+V+
Sbjct: 573 SAWFPYLDLLPALNEVPAT-PLFYTEAELALLEGTDLGGLVLAYRDQVTKSYDAIRRVFPRDVFSLAAYTHTRFL-----LDTRSIWWGGERHLVPILDMVN 668
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: H3GQB9_PHYRM (SET domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQB9_PHYRM) HSP 1 Score: 70.1 bits (170), Expect = 7.390e-12 Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAH--HPLFFDNA--TIASFEGSDVQAPL---RERRASEIFSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
S W PYL +LP + + PLF++ + S EG+D+ + R+R A S + D W+T R+LWA A++DSR IWWG ++HLVPLLD+V+
Sbjct: 644 SHWKPYLDMLPVLDDQASALGSPLFYEEGGEQLKSLEGTDLLLLVTNYRQRVAQAYVLLSDSLKASASDETST-WLTQRRFLWANAMLDSRSIWWGSQRHLVPLLDMVN 751
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Match: A0A662X6F8_9STRA (SET domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6F8_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.880e-11 Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 1 SPWAPYLRLLPTPSEMEAHH---PLFFDNATIASFEGSDVQAPLR----------ERRASEIFSYSYFVLIGHQDVLGLGWITLERYLWAAAIVDSRCIWWGGRKHLVPLLDLVS 306
S W PYL +LP+ ++ + + PLF++ EG ++ L +R +E +++ + L + L W+T R+ WA A++DSR IWWGG++HLVPLLD+V+
Sbjct: 659 SRWKPYLDMLPSLNDDGSSNLGSPLFYEA------EGEQLELLLDTDLLQLVVNYRQRVAESYAFLSWELQRSEHREALKWLTARRFQWANAMLDSRSIWWGGQRHLVPLLDMVN 767 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18.5512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18.5512.1 >prot_Ecto-sp13_S_contig18.5512.1 ID=prot_Ecto-sp13_S_contig18.5512.1|Name=mRNA_Ecto-sp13_S_contig18.5512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp SPWAPYLRLLPTPSEMEAHHPLFFDNATIASFEGSDVQAPLRERRASEIFback to top mRNA from alignment at Ecto-sp13_S_contig18:56263..56842- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18.5512.1 ID=mRNA_Ecto-sp13_S_contig18.5512.1|Name=mRNA_Ecto-sp13_S_contig18.5512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=580bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18:56263..56842- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18:56263..56842- >mRNA_Ecto-sp13_S_contig18.5512.1 ID=mRNA_Ecto-sp13_S_contig18.5512.1|Name=mRNA_Ecto-sp13_S_contig18.5512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18:56263..56842- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |