mRNA_Ecto-sp13_S_contig17999.5509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17999.5509.1
Unique NamemRNA_Ecto-sp13_S_contig17999.5509.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17999.5509.1 vs. uniprot
Match: D8LT08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT08_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 1.030e-112
Identity = 224/296 (75.68%), Postives = 229/296 (77.36%), Query Frame = 3 
Query:  279 DNRAEQVDGRSRIISSGSXXXXXXXXXXXXRRKKVDGTTPLFSGRLNCDVGEFVVFPTPRTSPVPFLLGKVLRKRVLTSGKVGVPSRTEVTVHWYTPKTRPPXXXXXXXXXXXXXXXXXXXXRARALEAEAVVRYTMGGWSGDFVPAGGXXXXXXXGATRKLKSDTGEEDLASAMVVFPGLLRSNDAIPAGVRDAVISAVLAATAAEDAKESGRKQPVGGVGHGEKKEREGGTSVKXXXXXXXXXXXXXXXXXXXXXGAGGAMLNGDGTSAVAAAITAAVAEEEGWETDDSADDFE 1166
            D RAE  DG  R IS GS            R  KVDGTTPL SGRLNCDVGEFVVFPTPRTSPVPFLLGKVLRKR L SGK GVPSRTEVTVHWYTPKTRPPXXXXXX              RARALEAEAVVRYT+GGWSGDFVPAGGXXXXX  GATR+LKSDTGEEDLASAMVVFPGLLRSNDAIPAGVRDAVISAVLAATAAEDAKESGRKQPVGGVGHGE K REG TS K                     GAGGA+L+GDGTSAVAAA+ AAVAEEEGWETDDSADDFE
Sbjct:  522 DKRAEHDDG-GRRISGGSGSGSGSRKKQ--RCNKVDGTTPLSSGRLNCDVGEFVVFPTPRTSPVPFLLGKVLRKRALASGKAGVPSRTEVTVHWYTPKTRPPXXXXXXVARGNGDDAGT---RARALEAEAVVRYTLGGWSGDFVPAGGXXXXX--GATRRLKSDTGEEDLASAMVVFPGLLRSNDAIPAGVRDAVISAVLAATAAEDAKESGRKQPVGGVGHGENKGREGDTSGKETGQSARPDGPGSRQKRAGRKGAGGAVLDGDGTSAVAAAVPAAVAEEEGWETDDSADDFE 809
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BLAST of mRNA_Ecto-sp13_S_contig17999.5509.1 vs. uniprot
Match: A0A6H5KIL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL3_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 3.140e-97
Identity = 225/296 (76.01%), Postives = 237/296 (80.07%), Query Frame = 3 
Query:  279 DNRAEQVDGRSRIISSGSXXXXXXXXXXXXRRKKVDGTTPLFSGRLNCDVGEFVVFPTPRTSPVPFLLGKVLRKRVLTSGKVGVPSRTEVTVHWYTPKTRPPXXXXXXXXXXXXXXXXXXXXRARALEAEAVVRYTMGGWSGDFVPAGGXXXXXXXGATRKLKSDTGEEDLASAMVVFPGLLRSNDAIPAGVRDAVISAVLAATAAEDAKESGRKQPVGGVGHGEKKEREGGTSVKXXXXXXXXXXXXXXXXXXXXXGAGGAMLNGDGTSAVAAAITAAVAEEEGWETDDSADDFE 1166
            D RAEQVDGRS++ SS              RR KVDGTTPL SGRLNCDVGEFVVFPTPR+SPVPFLLGK+LRKRVL SGK GVPSRTEVTVHWYTPKTRPPXXXXXX              RA+ALEAEAV RYT GGWSGDFVP  GXXXXXXX   R LKSDTGEEDLA+AMVVFPGLLRSNDA+PAGVRDAVISAVLAA AA++A+ES RKQP+GGVGHGE KEREGGTS KXXXXXXXXXXXXXXXXXXXXX           T A AAA+TAAVAEEEGWETDDSADDFE
Sbjct:  613 DKRAEQVDGRSKVSSSSGSGSRKKQ-----RRNKVDGTTPLSSGRLNCDVGEFVVFPTPRSSPVPFLLGKILRKRVLASGKAGVPSRTEVTVHWYTPKTRPPXXXXXXVARGNGDDAGT---RAQALEAEAVARYTSGGWSGDFVPTCGXXXXXXXXXXR-LKSDTGEEDLAAAMVVFPGLLRSNDAMPAGVRDAVISAVLAARAADNAEESRRKQPLGGVGHGENKEREGGTSGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFAAAAAVTAAVAEEEGWETDDSADDFE 899
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17999.5509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT08_ECTSI1.030e-11275.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIL3_9PHAE3.140e-9776.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17999contigEcto-sp13_S_contig17999:1040..2807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1768
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.3029435-UTR-Ecto-sp13_S_contig17999:1039..17251681462930.3029435-UTR-Ecto-sp13_S_contig17999:1039..1725Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17999 1040..1725 +
1681462930.3227198-UTR-Ecto-sp13_S_contig17999:2208..28071681462930.3227198-UTR-Ecto-sp13_S_contig17999:2208..2807Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17999 2209..2807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.3126788-CDS-Ecto-sp13_S_contig17999:1725..22081681462930.3126788-CDS-Ecto-sp13_S_contig17999:1725..2208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17999 1726..2208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17999.5509.1prot_Ecto-sp13_S_contig17999.5509.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17999 1726..2208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17999.5509.1

>prot_Ecto-sp13_S_contig17999.5509.1 ID=prot_Ecto-sp13_S_contig17999.5509.1|Name=mRNA_Ecto-sp13_S_contig17999.5509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MGGWSGDFVPAGGGGGGGGSGATRKLKSDTGEEDLASAMVVFPGLLRSND
AIPAGVRDAVISAVLAATAAEDAKESGRKQPVGGVGHGEKKEREGGTSVK
ETGPSARQDGPGSRQKGAGRKGAGGAMLNGDGTSAVAAAITAAVAEEEGW
ETDDSADDFE*
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mRNA from alignment at Ecto-sp13_S_contig17999:1040..2807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17999.5509.1 ID=mRNA_Ecto-sp13_S_contig17999.5509.1|Name=mRNA_Ecto-sp13_S_contig17999.5509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17999:1040..2807+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGGGGACCGGCGGCGAGCCCGGCAGCGGGGGAGAGCAAGGGTGCTCG
CCCCGTGGGGTCACCGGCGGGGTTCAGCCCGGAGTCGGGCATGGCACCAC
CACGCCGTCTTGTCCTTCGTCTTTGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGTCTTCATGTATCGTACGCAACGGCGGCGGCACCAAGAATAGA
GCGGACGCCGCAAGCGCCGCGGCTGCCGCTTGTGCAGCGTGGGCGGTAAA
CGGAGGGGCAAGAAGACCCCCGAACAACGACAATCGCGCCGAGCAAGTCG
ACGGCAGAAGCAGAATCATCAGCAGCGGTAGCGGTAGCGGTAGCGGTAGC
GGTAGCCGCAAGAAACAACGCCGCAAAAAGGTCGACGGCACAACGCCGCT
CTTCTCAGGCCGCCTCAATTGCGACGTCGGCGAGTTCGTCGTGTTCCCCA
CGCCCCGCACCTCTCCGGTCCCGTTCCTCCTGGGCAAGGTCCTGCGGAAG
AGGGTGCTCACAAGTGGTAAGGTCGGCGTCCCGTCGAGGACCGAGGTCAC
CGTCCATTGGTACACCCCCAAGACAAGGCCGCCGCCCCCGCCGCCGCCGC
CGCCGCCTCCTGTTGCCCGGGGCAACGGCGACGACGCCGGGGCGCGGGCG
CGGGCGTTGGAAGCGGAGGCGGTGGTGAGGTACACAATGGGAGGCTGGTC
CGGGGACTTCGTGCCCGCGGGGGGCGGCGGGGGCGGCGGCGGCAGCGGGG
CCACCAGGAAGCTGAAGAGCGACACCGGGGAGGAGGACCTGGCATCGGCG
ATGGTGGTGTTCCCGGGGTTGCTGCGGTCCAACGACGCCATACCCGCGGG
CGTGCGGGACGCCGTGATCTCGGCGGTATTGGCGGCAACGGCGGCGGAGG
ATGCCAAGGAGAGCGGAAGGAAGCAGCCAGTGGGAGGGGTCGGGCACGGC
GAGAAAAAGGAGCGGGAGGGGGGCACCAGCGTTAAGGAGACGGGGCCGAG
CGCGAGGCAAGACGGGCCGGGCAGTCGGCAGAAAGGAGCGGGTCGGAAGG
GCGCCGGGGGGGCGATGTTGAACGGAGACGGCACTTCCGCCGTGGCGGCT
GCCATAACAGCCGCAGTCGCGGAAGAGGAGGGCTGGGAGACGGACGATTC
GGCCGACGACTTCGAGTGACCGACCGTCCAACAAGAAAACCAGCTACGTA
GCAGTTCGTCCTCTGTGGCACAGCTACTTTTGTGCGAAGAAACGCGATGA
AGAACAGAGCGGGGGAACGCTCCTTCGAGGAGATCAATGTAGAAGCAAAT
TAAAAAGTGAGTGTAGCTTTGTGCACCCGTGCAGGCGTTGGGGGGGTAGA
GTCCGATAGCAGATACCCTGTTCTTGGTTTTGTTCGTGTGTTTTCCTTAA
ATTAGCATTGACCGCGCTAGCTGGATGACCACTATGAAGGCGTCGCTGTC
GTAGTGGGACAATACCTGTATGGACGCTTTCCAAACGGCAGGCTCTCCAA
GCAGGGGGGTCGCGGAGGGTAATTTCAATGTGCATGTGTAGAGCGTCGAC
CGCGCTGGCCTGGATGACAGCAGAATGCGTCAGTCCTATGGAGAGATAAG
AAACGCTACCACGATATCTGGGCAAGTCGTTCTCGTGGTTTCTTTTTTGT
GGAAGTATCAACCTGGTCAAACCGGCTGGTTCAGCAGTGACTGGCGCGAG
TTTGAAGATCGAATTCGCTTTTCTGATGTGTGCGTGTTTGGTTCAGCGAT
TTGCCTCGCCAGAAACCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17999:1040..2807+

>mRNA_Ecto-sp13_S_contig17999.5509.1 ID=mRNA_Ecto-sp13_S_contig17999.5509.1|Name=mRNA_Ecto-sp13_S_contig17999.5509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17999:1040..2807+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGCTGGTCCGGGGACTTCGTGCCCGCGGGGGGCGGCGGGGGCGG
CGGCGGCAGCGGGGCCACCAGGAAGCTGAAGAGCGACACCGGGGAGGAGG
ACCTGGCATCGGCGATGGTGGTGTTCCCGGGGTTGCTGCGGTCCAACGAC
GCCATACCCGCGGGCGTGCGGGACGCCGTGATCTCGGCGGTATTGGCGGC
AACGGCGGCGGAGGATGCCAAGGAGAGCGGAAGGAAGCAGCCAGTGGGAG
GGGTCGGGCACGGCGAGAAAAAGGAGCGGGAGGGGGGCACCAGCGTTAAG
GAGACGGGGCCGAGCGCGAGGCAAGACGGGCCGGGCAGTCGGCAGAAAGG
AGCGGGTCGGAAGGGCGCCGGGGGGGCGATGTTGAACGGAGACGGCACTT
CCGCCGTGGCGGCTGCCATAACAGCCGCAGTCGCGGAAGAGGAGGGCTGG
GAGACGGACGATTCGGCCGACGACTTCGAGTGA
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