mRNA_Ecto-sp13_S_contig17998.5508.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17998.5508.1
Unique NamemRNA_Ecto-sp13_S_contig17998.5508.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: A0A6H5KM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM40_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 9.410e-49
Identity = 90/96 (93.75%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTNA 288
            SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKED LG+ G GDEAGG+ NAIGLALVTVNLLLDGVTNA
Sbjct:  101 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDALGEEGAGDEAGGQKNAIGLALVTVNLLLDGVTNA 196
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: D7FT27_ECTSI (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT27_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.350e-44
Identity = 86/96 (89.58%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTNA 288
            SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKED LG+        GKNNAIGLALVTVNLLLDGVTNA
Sbjct:  101 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDALGEXXXXXXXXGKNNAIGLALVTVNLLLDGVTNA 196
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: A0A835ZGA1_9STRA (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.920e-25
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEA----GGKNNAIGLALVTVNLLLDGVTNA 288
            SL+YI+YPLLLLAKSCKLVPVM++G ++ G+R+TRAEYL+VGLITAGVALFS KPG         GG G  A    G    A+GL LV VNL+LDG TNA
Sbjct:   97 SLAYINYPLLLLAKSCKLVPVMVMGFLVSGKRYTRAEYLSVGLITAGVALFSYKPGG--------GGHGKHAEVERGALMEALGLGLVLVNLMLDGFTNA 188
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: J6F4H0_TRIAS (UDP-galactose transporter n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J6F4H0_TRIAS)

HSP 1 Score: 81.6 bits (200), Expect = 3.560e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTNA 288
            +L +ISYP+++L KSCKL+PV+L+ V+L  RR  R +Y+ VGL+T G++LF L              G  + GG+N+A GL L+ VNLL+DG+TN+
Sbjct:  147 ALRHISYPMMVLGKSCKLIPVLLLNVLLYRRRFGRQKYVVVGLVTLGISLFMLN-------------GKKKGGGENSAYGLLLLLVNLLIDGLTNS 229
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: A0A8H3TVU6_9TREE (Uncharacterized protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TVU6_9TREE)

HSP 1 Score: 81.6 bits (200), Expect = 3.920e-16
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTNA 288
            SL YISYP+++LAKSCKL+PV+L+ V+L  RR    +Y  V L++AG+ALF             +GG G     K ++IGLAL+ VNLL+DG+TN+
Sbjct:  143 SLKYISYPMMVLAKSCKLIPVLLLNVILYRRRFKPYKYAVVALVSAGIALFMY-----------NGGKGGGKASKGSSIGLALLGVNLLIDGLTNS 227
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: A0A7D8V215_9TREE (Uncharacterized protein n=1 Tax=Vanrija humicola TaxID=5417 RepID=A0A7D8V215_9TREE)

HSP 1 Score: 80.5 bits (197), Expect = 1.210e-15
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTNA 288
            +L +ISYP ++L KSCKL+PV+L+ V+L  RR   ++YL VGL++AG+ALF L             G   + GG N+A GL+L+ +NLL+DG+TN+
Sbjct:  237 ALRHISYPTMVLGKSCKLIPVLLLNVLLYRRRFAPSKYLVVGLVSAGIALFMLL------------GKSSKKGGSNSAWGLSLLLINLLIDGLTNS 320
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: A0A094CLJ2_9PEZI (DNA polymerase (Fragment) n=11 Tax=Pseudogymnoascus TaxID=78156 RepID=A0A094CLJ2_9PEZI)

HSP 1 Score: 80.1 bits (196), Expect = 1.830e-15
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTN 285
            SL++I Y   +LAKSCKL+PVM + V L GRR+   +YL V  +TAGVA+F+L   + K+  +  GGG +E   +N A GL ++ VNLLLDG+TN
Sbjct: 1581 SLAHIDYITFILAKSCKLLPVMFLHVTLFGRRYPWYKYLVVLTVTAGVAVFTLHASSAKKHKVKQGGGEEE---RNRAWGLLMLGVNLLLDGLTN 1672
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: A0A5C5G4N1_9BASI (UAA transporter family-domain-containing protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G4N1_9BASI)

HSP 1 Score: 79.3 bits (194), Expect = 2.140e-15
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLG-DGGGGDEAGGKNNAIGLALVTVNLLLDGVTNA 288
            +LS+IS+P LLL KSCKLVPVML+ ++L  R+    +Y+ V L+TAG+  F     AFK   +G  GGGG E+   ++ +GL L+ VNLLLDGVTNA
Sbjct:  113 ALSHISFPTLLLGKSCKLVPVMLMNILLYRRQFPLHKYVLVALVTAGIYAFM----AFKPVKVGKSGGGGPES---SSLLGLVLLAVNLLLDGVTNA 202
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: A0A094FM81_9PEZI (Uncharacterized protein n=1 Tax=Pseudogymnoascus sp. VKM F-4517 (FW-2822) TaxID=1420911 RepID=A0A094FM81_9PEZI)

HSP 1 Score: 79.0 bits (193), Expect = 3.020e-15
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTN 285
            SL++I Y   +LAKSCKL+PVM + V L GRR+   +YL V  +TAGVA+F+L   + K+     GG G+E   +N A GL ++ VNLLLDG+TN
Sbjct:  169 SLAHIDYITFILAKSCKLLPVMFLHVTLFGRRYPWHKYLVVLTVTAGVAVFTLHASSAKKHAAKKGGMGEEE--RNRAWGLLMLGVNLLLDGLTN 261
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BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Match: A0A8H4Q1F3_9HYPO (Uncharacterized protein n=1 Tax=Ophiocordyceps camponoti-floridani TaxID=2030778 RepID=A0A8H4Q1F3_9HYPO)

HSP 1 Score: 79.0 bits (193), Expect = 3.240e-15
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTN 285
            SL++I Y   LLAKSCKL+PVM + VVL GRR+ R +YL VG +TAGVA+F+L   + K+        G   GG +   GL L+ VNLLLDG+TN
Sbjct:  128 SLAHIDYVTFLLAKSCKLLPVMGLHVVLFGRRYPRYKYLVVGAVTAGVAVFTLYSSSGKKK-------GRTGGGGSMIWGLFLLCVNLLLDGLTN 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17998.5508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM40_9PHAE9.410e-4993.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT27_ECTSI2.350e-4489.58UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
A0A835ZGA1_9STRA1.920e-2563.00UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
J6F4H0_TRIAS3.560e-1645.83UDP-galactose transporter n=1 Tax=Trichosporon asa... [more]
A0A8H3TVU6_9TREE3.920e-1647.92Uncharacterized protein n=1 Tax=Naganishia liquefa... [more]
A0A7D8V215_9TREE1.210e-1545.83Uncharacterized protein n=1 Tax=Vanrija humicola T... [more]
A0A094CLJ2_9PEZI1.830e-1549.47DNA polymerase (Fragment) n=11 Tax=Pseudogymnoascu... [more]
A0A5C5G4N1_9BASI2.140e-1551.55UAA transporter family-domain-containing protein n... [more]
A0A094FM81_9PEZI3.020e-1549.47Uncharacterized protein n=1 Tax=Pseudogymnoascus s... [more]
A0A8H4Q1F3_9HYPO3.240e-1551.58Uncharacterized protein n=1 Tax=Ophiocordyceps cam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17998contigEcto-sp13_S_contig17998:2299..3548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score154.8
Seed ortholog evalue2e-35
Seed eggNOG ortholog2880.D7FT27
Preferred nameHUT1
Model size288
KEGG koko:K15275
KEGG TC2.A.7.11.1,2.A.7.11.4
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005459,GO:0005460,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008509,GO:0008514,GO:0009553,GO:0009555,GO:0009987,GO:0010033,GO:0012505,GO:0015075,GO:0015165,GO:0015711,GO:0015780,GO:0015786,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022857,GO:0023052,GO:0030173,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0072334,GO:0090481,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:1901264,GO:1901505
Exons2
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1581@2759
Cds size288
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.2687945-CDS-Ecto-sp13_S_contig17998:2298..25471681462930.2687945-CDS-Ecto-sp13_S_contig17998:2298..2547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17998 2299..2547 +
1681462930.278523-CDS-Ecto-sp13_S_contig17998:3509..35481681462930.278523-CDS-Ecto-sp13_S_contig17998:3509..3548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17998 3510..3548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17998.5508.1prot_Ecto-sp13_S_contig17998.5508.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17998 2299..3548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17998.5508.1

>prot_Ecto-sp13_S_contig17998.5508.1 ID=prot_Ecto-sp13_S_contig17998.5508.1|Name=mRNA_Ecto-sp13_S_contig17998.5508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
SLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVAL
FSLKPGAFKEDTLGDGGGGDEAGGKNNAIGLALVTVNLLLDGVTNA
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mRNA from alignment at Ecto-sp13_S_contig17998:2299..3548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17998.5508.1 ID=mRNA_Ecto-sp13_S_contig17998.5508.1|Name=mRNA_Ecto-sp13_S_contig17998.5508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1250bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17998:2299..3548+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCTCTCGTACATCAGCTACCCGCTGCTTCTCCTCGCCAAGAGCTGCAA
GCTAGTGCCGGTGATGCTGGTGGGAGTGGTGTTGCTCGGACGGAGGCACA
CGCGCGCTGAATACCTCGCCGTCGGGCTTATTACGGCTGGGGTAGCTTTG
TTCTCGCTAAAGCCGGGGGCGTTTAAGGAGGATACTTTGGGCGATGGGGG
GGGAGGGGACGAAGCCGGCGGGAAAAACAATGCCATCGGGCTTGCGCTGG
TGAGAGAGGGGGGGGGGGGGGGGAATCGGGTTGGATTTTCGAGAACTGAA
GTTGTATTTTTTCAGGTACAAAATGAAACGAAAATCTTGTACATGAGTCT
ACATTGAATCAAGTGGTGTGGTATACATGCACAGCGCTATCTCGTGGGAA
TCCACGTGAACGCACAACACAGCAGTGCACTTACGCAATAGCGCCTCCTC
TCTCCTGTGTTTCCTGTGGGAGAAAGTTTGTTTTTCCCTCTCCGCGCGCA
CGCGGACGCTTTTTGTTGTTTTGAAAATTATGCCCAGTAAGGCATAGTCG
GACTCTTTCCCCGGTTGTGGTGTGAAGTCAGATACGAATCCTACTTTCAT
CGAAACCAAAATACAGCAGAATCGATGTCGTCTGCCGCTACAGGAGGAAA
AGCGATAGACCATGTGCGCCACAAAGAAGCTGTAGGAAGGAAGCCGTCCA
CAACACGGGGCTAAACATCAGCCAAGTGATGCTCCTGGTGCAATCCGCGT
CCTCAGGCTTTCCCGAGAAATCTTGTTTTGTCCCTGTCTTCAGAACGTGT
CGTGGCCGACCGTCAGTTCTCGACGGTGAATTCCCTGAGAAATTAGGTGC
CGCAACACAACATGAAGCATCAAACAACTCGTGGCATACTCGCAGAATCT
TTGACAATATGCCAGCTAAGTTTACTAAATTGCAACGGGCGACGCTAGCG
CGCCAACCGCATATGGCACTGTCAGTAAACAGTGAGAAATGCCAGCACTT
CAGCGCAGAGAGTTAAAGAGGGACAAAAGATCATGACCCCGATTCCCGAA
CTTTTGTTTATCTTGGAAACCCGCTAATAAAGTAGACAATTCGCCCCCCC
CCCCCCCCCCCAGCCTTATCCTTGACGGTTCATGGCTAGCATTTGGTTTC
CTTATGAGGTTGAAAGATGCCTCACGGCGTCTACTGACCCAAGGTTCCCA
CATGTTTCCAGGTCACGGTCAACCTTTTGCTCGACGGGGTGACGAATGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17998:2299..3548+

>mRNA_Ecto-sp13_S_contig17998.5508.1 ID=mRNA_Ecto-sp13_S_contig17998.5508.1|Name=mRNA_Ecto-sp13_S_contig17998.5508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17998:2299..3548+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCTCTCGTACATCAGCTACCCGCTGCTTCTCCTCGCCAAGAGCTGCAA
GCTAGTGCCGGTGATGCTGGTGGGAGTGGTGTTGCTCGGACGGAGGCACA
CGCGCGCTGAATACCTCGCCGTCGGGCTTATTACGGCTGGGGTAGCTTTG
TTCTCGCTAAAGCCGGGGGCGTTTAAGGAGGATACTTTGGGCGATGGGGG
GGGAGGGGACGAAGCCGGCGGGAAAAACAATGCCATCGGGCTTGCGCTGG
TCACGGTCAACCTTTTGCTCGACGGGGTGACGAATGCC
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