mRNA_Ecto-sp13_S_contig17987.5502.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17987.5502.1
Unique NamemRNA_Ecto-sp13_S_contig17987.5502.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: D7FIS9_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS9_ECTSI)

HSP 1 Score: 488 bits (1255), Expect = 2.170e-162
Identity = 226/230 (98.26%), Postives = 229/230 (99.57%), Query Frame = 1 
Query:    1 GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQV 690
            GKGP+ QVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLA+HDLDLICRAHQ+
Sbjct:   20 GKGPARQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLATHDLDLICRAHQI 249
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: A0A6H5JFB0_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB0_9PHAE)

HSP 1 Score: 419 bits (1078), Expect = 3.360e-148
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 1 
Query:  115 MKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQVTMR 699
            MKICGDIHGQYYDLLRLFDHGGHPPHSNYL LGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQVTMR
Sbjct:    1 MKICGDIHGQYYDLLRLFDHGGHPPHSNYLLLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQVTMR 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: D7G4T1_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T1_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 2.320e-138
Identity = 183/230 (79.57%), Postives = 202/230 (87.83%), Query Frame = 1 
Query:    1 GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQV 690
            G  P  QV L E +I+ LC+ ARD+F+ QP LL+L  P+KICGDIHGQYYDLLRLF++GG PP +NYLFLGDYVDRGK SLETICLLL YK+KYP NFF+LRGNHE ASIN++YGFYDECKRRY+ KLW+TFTDCFNCLP+AAIVD+KIFC HGGLSPEL DM+QI RV RPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIV  FL  HDLDLICRAHQV
Sbjct:   23 GARPGKQVQLLETEIKMLCVKARDIFMQQPILLELEAPIKICGDIHGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFVLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCMHGGLSPELNDMDQIKRVLRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 252
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: A0A6H5L5X9_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X9_9PHAE)

HSP 1 Score: 400 bits (1028), Expect = 2.960e-138
Identity = 183/230 (79.57%), Postives = 202/230 (87.83%), Query Frame = 1 
Query:    1 GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQV 690
            G  P  QV L E +I+ LC+ ARD+F+ QP LL+L  P+KICGDIHGQYYDLLRLF++GG PP +NYLFLGDYVDRGK SLETICLLL YK+KYP NFF+LRGNHE ASIN++YGFYDECKRRY+ KLW+TFTDCFNCLP+AAIVD+KIFC HGGLSPEL DM+QI RV RPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIV  FL  HDLDLICRAHQV
Sbjct:   39 GARPGKQVQLLETEIKMLCVKARDIFMQQPILLELEAPIKICGDIHGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFVLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCMHGGLSPELNDMDQIKRVLRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQV 268
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: A0A8C6VYD3_NOTFU (Serine/threonine-protein phosphatase n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6VYD3_NOTFU)

HSP 1 Score: 395 bits (1015), Expect = 1.770e-137
Identity = 178/232 (76.72%), Postives = 201/232 (86.64%), Query Frame = 1 
Query:    1 GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQVTM 696
            G  P   V L E++IR LCL +R++FL QP LL+L  P+KICGDIHGQYYDLLRLF++GG PP SNYLFLGDYVDRGK SLETICLLL YK+KYP NFFLLRGNHE ASIN++YGFYDECKRRY+ KLW+TFTDCFNCLPIAAIVD+KIFC HGGLSP+L  MEQI R+ RPTDVPD GLLCDLLWSDPD+D++GWGENDRGVSFTFG ++V  FL  HDLDLICRAHQVT+
Sbjct:   21 GAKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGSEVVAKFLHKHDLDLICRAHQVTV 252
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: A0A8C4A9B8_9TELE (Serine/threonine-protein phosphatase n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4A9B8_9TELE)

HSP 1 Score: 394 bits (1012), Expect = 3.190e-137
Identity = 177/232 (76.29%), Postives = 201/232 (86.64%), Query Frame = 1 
Query:    1 GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQVTM 696
            G  P   V L E++IR LCL +R++FL QP LL+L  P+KICGDIHGQYYDLLRLF++GG+PP SNYLFLGDYVDRGK SLETICLLL YK+KYP NFFLLRGNHE ASIN++YGFYDECKRRY+ KLW+TFTDCFNCLPIAAIVD+KIFC HGGLSP+L  MEQI R+ RPTDVPD GLLCDLLWSDPD+D++GWGENDRGVSFTFG ++V  FL  HDLDLICRAHQ T+
Sbjct:   19 GSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQETV 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: A0A7S3UUT0_HETAK (Serine/threonine-protein phosphatase n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A7S3UUT0_HETAK)

HSP 1 Score: 397 bits (1019), Expect = 6.030e-137
Identity = 178/230 (77.39%), Postives = 201/230 (87.39%), Query Frame = 1 
Query:    1 GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQV 690
            G+ P  QV L E +++ LC+ ARD F+ QP LL+L  P+KICGD+HGQYYDLLRLF++GG PP +NYLFLGDYVDRGK SLETICLLL YK+KYP NFF+LRGNHE ASIN++YGFYDECKRRY+ KLW+TFTDCFNCLP+AAIVD+KIFC HGGLSPEL  MEQI R+ RPTDVPDTGLLCDLLWSDPD+DI+GWGENDRGVSFTFGEDIV  FL  HDLDLICRAHQV
Sbjct:   27 GQRPGRQVGLLEAEVKMLCVRARDTFMQQPILLELEAPIKICGDVHGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCMHGGLSPELSSMEQIKRIFRPTDVPDTGLLCDLLWSDPDKDIVGWGENDRGVSFTFGEDIVAQFLRRHDLDLICRAHQV 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: M4BAS0_HYAAE (Serine/threonine-protein phosphatase n=34 Tax=Oomycota TaxID=4762 RepID=M4BAS0_HYAAE)

HSP 1 Score: 396 bits (1017), Expect = 6.280e-137
Identity = 182/230 (79.13%), Postives = 200/230 (86.96%), Query Frame = 1 
Query:    1 GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQV 690
            G  P  QVNL E +IR LCL AR+VFL QP L++L  P+KICGDIHGQYYDLLRLF++GG PP +NYLFLGDYVDRGK SLETICLLL YK+KYP NFF+LRGNHE ASIN++YGFYDECKRRY+ KLW+TFTDCFNCLP+AAIVD+KIFC HGGLSPEL  MEQI R  RPTDVPDTGLLCDLLWSDPD+DI+GWGENDRGVSFTFG DIV  FL  HDLDLICRAHQV
Sbjct:   23 GARPGKQVNLTETEIRGLCLQAREVFLAQPILVELEAPIKICGDIHGQYYDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCMHGGLSPELSQMEQIKRFVRPTDVPDTGLLCDLLWSDPDKDIMGWGENDRGVSFTFGPDIVSQFLKRHDLDLICRAHQV 252
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: A0A1R2B2G0_9CILI (Serine/threonine-protein phosphatase n=3 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B2G0_9CILI)

HSP 1 Score: 396 bits (1017), Expect = 6.280e-137
Identity = 175/227 (77.09%), Postives = 200/227 (88.11%), Query Frame = 1 
Query:   10 PSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQV 690
            P  QVNL E ++RSLCL +RD+F+ QP LL+L  P+K+CGD+HGQYYDLLRLF++GG PP +NYLFLGDYVDRGK SLET+CLLL YK+KYP NFFLLRGNHE ASIN++YGFYDECKRRY+ KLW+TFTDCFNCLPIAAI+DDKIFC HGGLSPEL +MEQI R+ RP DVPDTGLLCDLLWSDPD D+ GWG+NDRGVSFTFG DIV +FL  HDLDL+CRAHQV
Sbjct:   22 PGRQVNLTEQEVRSLCLKSRDIFMSQPILLELEAPLKVCGDVHGQYYDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETVCLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDDKIFCMHGGLSPELSNMEQIRRIMRPVDVPDTGLLCDLLWSDPDADVQGWGDNDRGVSFTFGNDIVSNFLRKHDLDLVCRAHQV 248
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Match: A0A3P8ZAT4_ESOLU (Serine/threonine-protein phosphatase n=3 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A3P8ZAT4_ESOLU)

HSP 1 Score: 394 bits (1011), Expect = 7.710e-137
Identity = 178/232 (76.72%), Postives = 200/232 (86.21%), Query Frame = 1 
Query:    1 GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYYDLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFLLRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIFCAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVRDFLASHDLDLICRAHQVTM 696
            G  P   V L E++IR LCL +R++FL QP LL+L  P+KICGDIHGQYYDLLRLF++GG PP SNYLFLGDYVDRGK SLETICLLL YK+KYP NFFLLRGNHE ASIN++YGFYDECKRRY+ KLW+TFTDCFNCLPIAAIVD+KIFC HGGLSP+L  MEQI RV RPTDVPD GLLCDLLWSDPD+D++GWGENDRGVSFTFG ++V  FL  HDLDLICRAHQV +
Sbjct:   21 GAKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRVMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGSEVVAKFLHKHDLDLICRAHQVCL 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17987.5502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIS9_ECTSI2.170e-16298.26Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A6H5JFB0_9PHAE3.360e-14899.49Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
D7G4T1_ECTSI2.320e-13879.57Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A6H5L5X9_9PHAE2.960e-13879.57Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A8C6VYD3_NOTFU1.770e-13776.72Serine/threonine-protein phosphatase n=1 Tax=Notho... [more]
A0A8C4A9B8_9TELE3.190e-13776.29Serine/threonine-protein phosphatase n=1 Tax=Denti... [more]
A0A7S3UUT0_HETAK6.030e-13777.39Serine/threonine-protein phosphatase n=2 Tax=Chatt... [more]
M4BAS0_HYAAE6.280e-13779.13Serine/threonine-protein phosphatase n=34 Tax=Oomy... [more]
A0A1R2B2G0_9CILI6.280e-13777.09Serine/threonine-protein phosphatase n=3 Tax=Stent... [more]
A0A3P8ZAT4_ESOLU7.710e-13776.72Serine/threonine-protein phosphatase n=3 Tax=Eutel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17987contigEcto-sp13_S_contig17987:51..3314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score491.9
Seed ortholog evalue1.7e-136
Seed eggNOG ortholog2880.D7FIS9
Model size702
KEGG koko:K06269
KEGG Pathwayko03015,ko04022,ko04024,ko04113,ko04114,ko04218,ko04261,ko04270,ko04390,ko04510,ko04611,ko04720,ko04728,ko04750,ko04810,ko04910,ko04921,ko04931,ko05031,ko05034,ko05168,ko05205,map03015,map04022,map04024,map04113,map04114,map04218,map04261,map04270,map04390,map04510,map04611,map04720,map04728,map04750,map04810,map04910,map04921,map04931,map05031,map05034,map05168,map05205
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0374@2759
Ec32 ortholog descriptionSerine/threonine protein phosphatase catalytic subunit
Ec32 orthologEc-20_003050.1
EC3.1.3.16
Cds size702
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03019,ko03021,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.9147928-CDS-Ecto-sp13_S_contig17987:50..2171681462929.9147928-CDS-Ecto-sp13_S_contig17987:50..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17987 51..217 -
1681462929.9273984-CDS-Ecto-sp13_S_contig17987:800..9771681462929.9273984-CDS-Ecto-sp13_S_contig17987:800..977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17987 801..977 -
1681462929.937159-CDS-Ecto-sp13_S_contig17987:1925..20711681462929.937159-CDS-Ecto-sp13_S_contig17987:1925..2071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17987 1926..2071 -
1681462929.9505541-CDS-Ecto-sp13_S_contig17987:2558..26431681462929.9505541-CDS-Ecto-sp13_S_contig17987:2558..2643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17987 2559..2643 -
1681462929.9584084-CDS-Ecto-sp13_S_contig17987:3187..33141681462929.9584084-CDS-Ecto-sp13_S_contig17987:3187..3314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17987 3188..3314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17987.5502.1prot_Ecto-sp13_S_contig17987.5502.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17987 51..3314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17987.5502.1

>prot_Ecto-sp13_S_contig17987.5502.1 ID=prot_Ecto-sp13_S_contig17987.5502.1|Name=mRNA_Ecto-sp13_S_contig17987.5502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
GKGPSTQVNLYEDDIRSLCLVARDVFLDQPCLLQLATPMKICGDIHGQYY
DLLRLFDHGGHPPHSNYLFLGDYVDRGKHSLETICLLLCYKVKYPANFFL
LRGNHESASINKMYGFYDECKRRYSTKLWRTFTDCFNCLPIAAIVDDKIF
CAHGGLSPELFDMEQINRVSRPTDVPDTGLLCDLLWSDPDRDIIGWGEND
RGVSFTFGEDIVRDFLASHDLDLICRAHQVTMR*
back to top

mRNA from alignment at Ecto-sp13_S_contig17987:51..3314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17987.5502.1 ID=mRNA_Ecto-sp13_S_contig17987.5502.1|Name=mRNA_Ecto-sp13_S_contig17987.5502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17987:51..3314- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAAAGGCCCATCCACGCAGGTTAACCTATACGAAGATGACATCCGATC
GCTCTGCCTGGTGGCGCGAGACGTGTTCCTGGACCAGCCGTGCCTCCTTC
AGCTGGCCACTCCCATGAAGATCTGCGGTAAGTTTTTGACATATGCATTT
CGTACATAGGATTGCAGTTGTTCGAGGGGGCGACGGGAACGTATTCGACG
TGTGTGCTTTGGCGCTGGCTTTGATTGAGTCGGGAGAATGGAGGGGGTAA
AGAACGAAGCGAATGGGCGCGGGGGGGGGGGCTTCGTTCGTTGTCATGTG
GCGTTGGGGTTCTCGGAAGGCGGAGGGTGTGGTCGGTTGGTTCTTCAGCA
GAAACAGCCCTTTATAGTCGGCCGGTGCATGTTTGTGGCAGGGAACCTTG
TTGCCAGCAGCACCCTCCACCTGGACAGACCTGCGGAGACAGACCGGTTG
GCCCATCCAGACTTCCGGTTACTCGTGATCTTACTTACTTAATGTAAGGA
GGCAAGTTTTTCCGCATGCCGCCTGAATGTGGACGTACCACATCCAAAAT
TGGGTGGCACCTCGCTTGTAACGTTCGGGTTGTTTATTGCGTGCTTGCTC
ATGGAGTGTGGGTAATTGTTTTCCTGTCTCTGGATGTTTTTTTTTTGTGG
ATTTCTTCTTCCCGGTCGCAGGTGACATCCACGGTCAGTACTACGACCTC
CTCCGGCTGTTCGATCACGGTGGCCACCCTCCGCACTCCAACTACCTCTT
TCTTGGGTGAGAGGGGTTGGTCTGTTCCGCGGGGTGGCCTTGTATGTGCC
CCGGCCTGTTCCGTGTAGATATGTAGGTCGATCCAAGCCCCAAAGGTTTG
CTGTGCCGGGGTTTTGGAGCACGATGGTCGTCGACAAGAAGAATCGAGCA
GCGGCAGCCGTTTCCTTCCACGTCCTGTGAGGTTGCCGCCGCGAATCGGA
ATGATCCTTAGCTGCTTCTAATTTTTCTTGTCGTTCCCATGCCTAATATC
CCCGAGGGATTGCTCCCCCGCCTTAAGGTCGACCGCGGCTGTAGCTGCCC
CCGTCTTCTTGCTCGTCGAATCAGTAAGGGAGGCCGGTTTCGACGTTGAT
GTGGCGTGTATGGTACTGCATGCGTCACGCTTCTTCTTCGCGCAGCTGAA
GGGGAAACACGGCTGACGGAGCTGAAGTTCCCTTTGCCCTTGCTCAATTT
TCGCACGTCGCTGCCGCGTGTTCTTGTTTCTTTTTTTTTCCAGGGACTAC
GTGGACCGGGGCAAGCACAGCCTGGAGACGATCTGCCTGCTGCTGTGCTA
CAAGGTCAAGTACCCGGCCAACTTCTTCCTCCTGAGGGGCAATCACGAGT
CGGCCTCCATCAACAAGATGTACGGCTTCTACGACGAATGTGAGAGAGAA
GGTGTACAGCAGTGTTAGTGTCGCCGGCGGCGGCGATGGTGTCGTCGGTG
CGGGCGGGGTGTGTCTGTTATTTGCCGCTCGGCGTCGTTGTTGTCATTGA
TGGTTCCAGGTGGTGTTGGCTGTGGTGGGGTACGCCCTTGGCGCTACGAA
CTCGTCTCCGACCTCGATCCGATGTTTTGCCTCCGCACCCGGCCGTCTCG
GGTAGGGCACGGCGATTGGACAATCAGCGCGGCCTCTCCCTTCTCGTTTG
CGGCGCCGCTCGCCGTGCGTGCGTAGAACCAGAGGGCTGTTGGGGGAGCG
AGCTTCAGAGGTTCGTTCGTAACGACGTCCTCAAACCGTTTGCCACTCGA
GAGCTTGGGCTGCCGTCCCGTGTGACGCGGTACGAGTTCGCGTACCCGGG
GGCTCTTGCACCCGCATAAATGGTTGGCACGACGGGGGGTGGTTGATGCG
GCCGGTCTCTCGGGCCGGACGAAATAATAGCAGCTCGTAGCCTCTCCTCG
GGGCATGAGTGCCGGTAGACGTTTGGTTTGGGTCGTCCAGCCGGCTGCGG
CAGGTATAAATAGGTGTGGTATGGCTGGGTGGCCTCTGTCCCCCCCCGTC
CAGCCCCGGCACGGTCAGCAAGGAATGGCCGCCGCCGCCGCTTGCTTCTT
TTTCGGCTGACGATTGTGCCGATGCATCAAAGATTAAGATTCCTTTCCCC
CAAGCCTCCTTTCCTCCACCAATCACTCGTCGCTCAGTTTGACGAGAACA
GCTGGCTGCGTACGGAAACTGAGTCCTCGCCAGTGCCACGGACGAGAAAC
ACGCCTCCTGTGGCCTTGTCTTTTCATGTTCTTGCGCGCGCGCACGTGCG
CGGGGATGGGGCGCCCCTCTACATCTTTGTCTCTCTCCCTCTCACTCCCA
CGTCCACAGTTTCTCCCTCACTTTCTCCGTGTCTCAGGCAAGCGCCGGTA
CTCCACCAAGCTCTGGAGGACTTTCACGGACTGCTTCAACTGTCTCCCCA
TAGCCGCCATCGTGGACGACAAGATTTTTTGCGCCCACGGCGGACTGTCA
CCGGAGCTGTTCGACATGGAGCAGATCAACAGGGTCTCGAGACCGACGGA
TGTGCCTGATACAGGTGAGCGGGGGGGAGGGGTACTCATAGTTGTACATG
CCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAACACCGAGTCACCG
CAGCAGCTTCGATTCATGTTTGAAACCTTGTATGGTTTGGCAAGAGCCCC
TTCGAGGTGTGGCCTCTGTATCGATATTTGGGTCGCCAGCCAGAGCTAGG
AAGGCCTAGAAGACACTGATCGAGGAGGGGGGCAGGTTCAGATTTTGCCT
CGGCTTAGCCGAGTTCTAGTTCGTTCGGTTGATTATTTTTCCGCCAGAGG
TCACTTGACTTGATGCCCCAAGCCTCATTTGCGTGACAAATAATTGAGAT
TTATCTACCTTTGTCGAGATTATGTTAGTATATTTTGAGTTATTTATCTT
CGTTACCCCGCGTAACGCAGGACGGAACACACGCGCAGCATCTCCGGAGA
ACCTATCACGGAAGTTGGCGCGTTTTGCCATTTTGATTTGTCCTCCATCA
ACAAGACTCTTTCTGCTGCGATGATGATAACGTGGTCTTTCTTAACACAG
GAACGGACACTATCGCGTGCTTGGTTTTTTGTCCGCCGGCTTGACAGGTT
TGCTGTGCGACCTGCTTTGGTCGGATCCCGACCGCGACATCATCGGGTGG
GGAGAGAACGACAGAGGCGTTTCGTTCACGTTCGGGGAAGACATCGTCAG
GGACTTTCTCGCCTCGCACGACCTCGATCTGATCTGCCGAGCCCACCAGG
TGACCATGCGGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17987:51..3314-

>mRNA_Ecto-sp13_S_contig17987.5502.1 ID=mRNA_Ecto-sp13_S_contig17987.5502.1|Name=mRNA_Ecto-sp13_S_contig17987.5502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17987:51..3314- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAAAGGCCCATCCACGCAGGTTAACCTATACGAAGATGACATCCGATC
GCTCTGCCTGGTGGCGCGAGACGTGTTCCTGGACCAGCCGTGCCTCCTTC
AGCTGGCCACTCCCATGAAGATCTGCGGTGACATCCACGGTCAGTACTAC
GACCTCCTCCGGCTGTTCGATCACGGTGGCCACCCTCCGCACTCCAACTA
CCTCTTTCTTGGGGACTACGTGGACCGGGGCAAGCACAGCCTGGAGACGA
TCTGCCTGCTGCTGTGCTACAAGGTCAAGTACCCGGCCAACTTCTTCCTC
CTGAGGGGCAATCACGAGTCGGCCTCCATCAACAAGATGTACGGCTTCTA
CGACGAATGCAAGCGCCGGTACTCCACCAAGCTCTGGAGGACTTTCACGG
ACTGCTTCAACTGTCTCCCCATAGCCGCCATCGTGGACGACAAGATTTTT
TGCGCCCACGGCGGACTGTCACCGGAGCTGTTCGACATGGAGCAGATCAA
CAGGGTCTCGAGACCGACGGATGTGCCTGATACAGGTTTGCTGTGCGACC
TGCTTTGGTCGGATCCCGACCGCGACATCATCGGGTGGGGAGAGAACGAC
AGAGGCGTTTCGTTCACGTTCGGGGAAGACATCGTCAGGGACTTTCTCGC
CTCGCACGACCTCGATCTGATCTGCCGAGCCCACCAGGTGACCATGCGGT
AG
back to top