mRNA_Ecto-sp13_S_contig17983.5499.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17983.5499.1
Unique NamemRNA_Ecto-sp13_S_contig17983.5499.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17983.5499.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.760e-62
Identity = 115/140 (82.14%), Postives = 120/140 (85.71%), Query Frame = -2 
Query:    3 LSDNDVSVSADGSDNRRPATSQGSRATGSGARTGDGAEVDVSPAFSWVSEPGAEDLRFNQRRDLGRSLSGAWMPAAGPGASSLRVVRRSDVRDAAGVSSAPCLGDLCSLEFSATSLGVPTVRLRPAGGVGSSRPGLVEEI 422
            LSD+DVSVSA GSDNRRPATS+ S ATGSGARTGDG +V+VSPA SWVSE GAEDLRFNQRRDLGR+LSG WMPAAGPGASSLR VRRSDVRDA G SSAPCLGDLCS E  A SLGVP  RLRPAGG GSSRP   EEI
Sbjct: 1057 LSDDDVSVSAGGSDNRRPATSEDSTATGSGARTGDGGDVNVSPAVSWVSELGAEDLRFNQRRDLGRTLSGGWMPAAGPGASSLRGVRRSDVRDAVGASSAPCLGDLCSPEIPAASLGVPAARLRPAGGAGSSRPRFAEEI 1196
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BLAST of mRNA_Ecto-sp13_S_contig17983.5499.1 vs. uniprot
Match: D7G050_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G050_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.040e-5
Identity = 26/38 (68.42%), Postives = 27/38 (71.05%), Query Frame = -3 
Query:    2 SVIFVRWNFRRLPLAFLPCVFDRREGWGHPGQA*WKRL 115
            S + V   F RLPLAFLP  FDRREG GHPGQA  KRL
Sbjct: 1022 SSLRVHQKFGRLPLAFLPRAFDRREGRGHPGQAWRKRL 1059
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17983.5499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMA0_9PHAE2.760e-6282.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G050_ECTSI3.040e-568.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17983contigEcto-sp13_S_contig17983:1853..2276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size426
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.7777834-CDS-Ecto-sp13_S_contig17983:1852..22751681462929.7777834-CDS-Ecto-sp13_S_contig17983:1852..2275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17983 1853..2275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17983.5499.1prot_Ecto-sp13_S_contig17983.5499.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17983 1853..2275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17983.5499.1

>prot_Ecto-sp13_S_contig17983.5499.1 ID=prot_Ecto-sp13_S_contig17983.5499.1|Name=mRNA_Ecto-sp13_S_contig17983.5499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
TISSTKPGRDDPTPPAGRRRTVGTPREVAENSSEQRSPRHGAEDTPAASR
TSLLRTTRRLLAPGPAAGIHAPESERPRSRRWLNRRSSAPGSETQEKAGE
TSTSAPSPVRAPLPVALEPCDVAGRRLSEPSAETETSLSES
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mRNA from alignment at Ecto-sp13_S_contig17983:1853..2276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17983.5499.1 ID=mRNA_Ecto-sp13_S_contig17983.5499.1|Name=mRNA_Ecto-sp13_S_contig17983.5499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17983:1853..2276+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAATCTCTTCCACTAAGCCTGGCCGGGATGACCCCACCCCTCCCGCCGG
TCGAAGACGCACGGTAGGAACGCCAAGGGAAGTCGCCGAAAATTCCAGCG
AACAAAGATCACCGAGACATGGAGCAGAAGACACCCCAGCAGCATCCCGG
ACGTCGCTCCTCCGCACGACTCGCAGGCTGCTCGCTCCGGGCCCTGCCGC
GGGCATCCATGCACCGGAGAGTGAACGGCCGAGGTCGCGCCGCTGGTTAA
ACCGGAGATCTTCCGCCCCCGGCTCGGAGACCCAAGAGAAGGCTGGCGAA
ACGTCCACTTCTGCACCATCACCAGTACGAGCACCGCTGCCGGTTGCCCT
TGAGCCCTGCGATGTCGCCGGCCGTCGGTTGTCGGAACCATCGGCGGAAA
CGGAAACATCGTTGTCCGAAAGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17983:1853..2276+

>mRNA_Ecto-sp13_S_contig17983.5499.1 ID=mRNA_Ecto-sp13_S_contig17983.5499.1|Name=mRNA_Ecto-sp13_S_contig17983.5499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17983:1853..2276+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAATCTCTTCCACTAAGCCTGGCCGGGATGACCCCACCCCTCCCGCCGG
TCGAAGACGCACGGTAGGAACGCCAAGGGAAGTCGCCGAAAATTCCAGCG
AACAAAGATCACCGAGACATGGAGCAGAAGACACCCCAGCAGCATCCCGG
ACGTCGCTCCTCCGCACGACTCGCAGGCTGCTCGCTCCGGGCCCTGCCGC
GGGCATCCATGCACCGGAGAGTGAACGGCCGAGGTCGCGCCGCTGGTTAA
ACCGGAGATCTTCCGCCCCCGGCTCGGAGACCCAAGAGAAGGCTGGCGAA
ACGTCCACTTCTGCACCATCACCAGTACGAGCACCGCTGCCGGTTGCCCT
TGAGCCCTGCGATGTCGCCGGCCGTCGGTTGTCGGAACCATCGGCGGAAA
CGGAAACATCGTTGTCCGAAAGC
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