mRNA_Ecto-sp13_S_contig17978.5496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17978.5496.1
Unique NamemRNA_Ecto-sp13_S_contig17978.5496.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17978.5496.1 vs. uniprot
Match: D8LEC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC1_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.240e-59
Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:   82 MAEDAASCRGCIFRWRFGFRRALYEQLFLKNEALVVLVRNMLGIKGDGDVASVMRVFLDVDLRGTHKLDIETFFEYFDIEFSEYNKRAFRLLAFGDEQ 375
            MAEDAASCRGCIFRWRFGFRRALYEQLFLKNE LVVLVRNMLGIKGDGDVA VMRVFLDVDLRGTHKLDIETFFEYF IEFSEYNKRAFRLLAFGDEQ
Sbjct:    1 MAEDAASCRGCIFRWRFGFRRALYEQLFLKNEPLVVLVRNMLGIKGDGDVARVMRVFLDVDLRGTHKLDIETFFEYFGIEFSEYNKRAFRLLAFGDEQ 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17978.5496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEC1_ECTSI2.240e-5996.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17978contigEcto-sp13_S_contig17978:2037..2992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size375
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.4687977-CDS-Ecto-sp13_S_contig17978:2036..22431681462929.4687977-CDS-Ecto-sp13_S_contig17978:2036..2243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17978 2037..2243 -
1681462929.4801688-CDS-Ecto-sp13_S_contig17978:2824..29921681462929.4801688-CDS-Ecto-sp13_S_contig17978:2824..2992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17978 2825..2992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17978.5496.1prot_Ecto-sp13_S_contig17978.5496.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17978 2037..2992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17978.5496.1

>prot_Ecto-sp13_S_contig17978.5496.1 ID=prot_Ecto-sp13_S_contig17978.5496.1|Name=mRNA_Ecto-sp13_S_contig17978.5496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MNLFGQVCGVIRLRTLALLCLSENVVWMAEDAASCRGCIFRWRFGFRRAL
YEQLFLKNEALVVLVRNMLGIKGDGDVASVMRVFLDVDLRGTHKLDIETF
FEYFDIEFSEYNKRAFRLLAFGDEQ
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mRNA from alignment at Ecto-sp13_S_contig17978:2037..2992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17978.5496.1 ID=mRNA_Ecto-sp13_S_contig17978.5496.1|Name=mRNA_Ecto-sp13_S_contig17978.5496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17978:2037..2992- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTATTTGGGCAGGTGTGTGGGGTCATTCGACTCAGAACGTTGGC
ACTCCTCTGTCTTTCAGAAAACGTCGTATGGATGGCAGAGGATGCGGCTT
CGTGCCGAGGCTGCATATTTCGATGGAGGTTTGGCTTCCGAAGGGCTCTG
TACGAGCAACTATTCTTGGTGAGCACATGAGTCGTCTCGAGTTTTTACCG
TGCCATTGACGATTACAGCAGTTGTGAGACACATGTCGAGAACCGCTTGA
AGCACCTGCTCATGTATGACTACCCACATGTGCCATGCAGGGTATGTATG
CACATTTATGTATCGTAGATGAAGTCTGCAACTATACAGCGAAAGTATGT
ACTCCGTCAGTGCGATTTGTAAGGGTACATTGAGGTCGCCAACTGTATTC
ATTCGATACTCTCAATGTCCCACCTGGAAAGCGGGAATGTACATAGACAG
GCTGGTGTGAGATTCCCGTCTTGGACTTCGGCTATGTTAAGTTGATGTAA
GTGCCAACAGCGTTTTCGGAGCGCCATTAGTACGTCACCGACATGCACCA
AGCACTCCAGCTGCCTCTTGTAAACTTATTGACGACATGTCCCTCACAAT
GATATCAATTCTTCCTCTCGTTGATTGCTAGCCTACCGATATCCTATTAA
GTACAACGAAATTCCACGCAACGCGAAACACACCGCACACAGTTGTTGTC
GATTGACTACAGTACCCCGCTCACGCGACTTTCCATGCAACGATTGCAGA
AGAACGAGGCTCTGGTGGTGCTCGTGCGAAATATGTTAGGCATCAAGGGC
GATGGTGACGTGGCGAGCGTCATGCGCGTCTTCCTAGACGTCGACCTTCG
AGGAACGCACAAGTTGGATATCGAGACCTTCTTCGAGTACTTCGACATCG
AGTTCTCCGAGTACAACAAGCGAGCCTTTCGGCTTTTAGCCTTCGGCGAT
GAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17978:2037..2992-

>mRNA_Ecto-sp13_S_contig17978.5496.1 ID=mRNA_Ecto-sp13_S_contig17978.5496.1|Name=mRNA_Ecto-sp13_S_contig17978.5496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17978:2037..2992- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTATTTGGGCAGGTGTGTGGGGTCATTCGACTCAGAACGTTGGC
ACTCCTCTGTCTTTCAGAAAACGTCGTATGGATGGCAGAGGATGCGGCTT
CGTGCCGAGGCTGCATATTTCGATGGAGGTTTGGCTTCCGAAGGGCTCTG
TACGAGCAACTATTCTTGAAGAACGAGGCTCTGGTGGTGCTCGTGCGAAA
TATGTTAGGCATCAAGGGCGATGGTGACGTGGCGAGCGTCATGCGCGTCT
TCCTAGACGTCGACCTTCGAGGAACGCACAAGTTGGATATCGAGACCTTC
TTCGAGTACTTCGACATCGAGTTCTCCGAGTACAACAAGCGAGCCTTTCG
GCTTTTAGCCTTCGGCGATGAACAG
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